Gene: Cpsf6 (cleavage and polyadenylation specific factor 6) Rattus norvegicus
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Symbol: Cpsf6
Name: cleavage and polyadenylation specific factor 6
Description: ENCODES a protein that exhibits exon-exon junction complex binding (ortholog); mRNA binding (ortholog); ribosomal large subunit binding (ortholog); INVOLVED IN messenger ribonucleoprotein complex assembly (ortholog); mRNA alternative polyadenylation (ortholog); mRNA processing (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; mRNA decay pathway; FOUND IN cytoplasm (ortholog); interchromatin granule (ortholog); mRNA cleavage and polyadenylation specificity factor complex (ortholog); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,4-dinitrotoluene; 2,6-dinitrotoluene
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cleavage and polyadenylation specific factor 6, 68kDa; cleavage and polyadenylation specificity factor subunit 6; LOC299811
Orthologs:
Homo sapiens (human) : CPSF6 (cleavage and polyadenylation specific factor 6)  HGNC  Alliance
Mus musculus (house mouse) : Cpsf6 (cleavage and polyadenylation specific factor 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cpsf6 (cleavage and polyadenylation specific factor 6)
Pan paniscus (bonobo/pygmy chimpanzee) : CPSF6 (cleavage and polyadenylation specific factor 6)
Canis lupus familiaris (dog) : CPSF6 (cleavage and polyadenylation specific factor 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cpsf6 (cleavage and polyadenylation specific factor 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0760,385,688 - 60,417,661 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0760,387,688 - 60,432,254 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4756,658,291 - 56,689,892 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1756,684,035 - 56,711,179 (-)NCBI
Celera749,730,420 - 49,761,230 (-)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Cpsf6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1304640
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2018-08-14
Status: ACTIVE