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Gene: Cpsf6 (cleavage and polyadenylation specific factor 6) Rattus norvegicus
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Symbol: Cpsf6
Name: cleavage and polyadenylation specific factor 6
Description: Predicted to contribute to RNA binding activity. Predicted to be involved in several processes, including mRNA alternative polyadenylation; pre-mRNA cleavage required for polyadenylation; and protein-containing complex assembly. Predicted to localize to cytoplasm; nuclear lumen; and ribonucleoprotein complex. Orthologous to human CPSF6 (cleavage and polyadenylation specific factor 6); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; mRNA decay pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cleavage and polyadenylation specific factor 6, 68kDa; cleavage and polyadenylation specificity factor subunit 6; LOC299811
Orthologs:
Homo sapiens (human) : CPSF6 (cleavage and polyadenylation specific factor 6)  HGNC  Alliance
Mus musculus (house mouse) : Cpsf6 (cleavage and polyadenylation specific factor 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cpsf6 (cleavage and polyadenylation specific factor 6)
Pan paniscus (bonobo/pygmy chimpanzee) : CPSF6 (cleavage and polyadenylation specific factor 6)
Canis lupus familiaris (dog) : CPSF6 (cleavage and polyadenylation specific factor 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cpsf6 (cleavage and polyadenylation specific factor 6)
Sus scrofa (pig) : CPSF6 (cleavage and polyadenylation specific factor 6)
Chlorocebus sabaeus (African green monkey) : CPSF6 (cleavage and polyadenylation specific factor 6)
Heterocephalus glaber (naked mole-rat) : Cpsf6 (cleavage and polyadenylation specific factor 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0760,385,688 - 60,417,661 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl760,385,688 - 60,416,925 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0760,387,688 - 60,432,254 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4756,658,291 - 56,689,892 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1756,684,035 - 56,711,179 (-)NCBI
Celera749,730,420 - 49,761,230 (-)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Cpsf6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1304640
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.