Stac3 (SH3 and cysteine rich domain 3) - Rat Genome Database

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Gene: Stac3 (SH3 and cysteine rich domain 3) Rattus norvegicus
Analyze
Symbol: Stac3
Name: SH3 and cysteine rich domain 3
RGD ID: 1308964
Description: Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including neuromuscular synaptic transmission; positive regulation of protein localization to plasma membrane; and positive regulation of voltage-gated calcium channel activity. Predicted to act upstream of or within skeletal muscle fiber development. Predicted to be located in cytoplasmic side of plasma membrane; cytosol; and nucleoplasm. Predicted to be part of voltage-gated calcium channel complex. Human ortholog(s) of this gene implicated in Native American myopathy. Orthologous to human STAC3 (SH3 and cysteine rich domain 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362895; SH3 and cysteine-rich domain-containing protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,227,151 - 65,235,884 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl765,228,352 - 65,235,878 (+)EnsemblGRCr8
mRatBN7.2763,343,078 - 63,350,590 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,343,186 - 63,350,589 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx765,232,464 - 65,239,867 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,434,891 - 67,442,294 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,236,106 - 67,243,510 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,807,427 - 70,815,271 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,807,867 - 70,815,270 (+)Ensemblrn6Rnor6.0
Rnor_5.0770,981,174 - 70,988,656 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4767,478,506 - 67,485,909 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera760,482,101 - 60,489,521 (+)NCBICelera
RGSC_v3.1767,500,312 - 67,506,640 (+)NCBI
Cytogenetic Map7q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16189514   PMID:23626854   PMID:23736855   PMID:25416956   PMID:27621462   PMID:28112192   PMID:29467163   PMID:33409656  


Genomics

Comparative Map Data
Stac3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,227,151 - 65,235,884 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl765,228,352 - 65,235,878 (+)EnsemblGRCr8
mRatBN7.2763,343,078 - 63,350,590 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,343,186 - 63,350,589 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx765,232,464 - 65,239,867 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,434,891 - 67,442,294 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,236,106 - 67,243,510 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,807,427 - 70,815,271 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,807,867 - 70,815,270 (+)Ensemblrn6Rnor6.0
Rnor_5.0770,981,174 - 70,988,656 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4767,478,506 - 67,485,909 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera760,482,101 - 60,489,521 (+)NCBICelera
RGSC_v3.1767,500,312 - 67,506,640 (+)NCBI
Cytogenetic Map7q22NCBI
STAC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,243,458 - 57,251,187 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,243,453 - 57,251,188 (-)Ensemblhg38GRCh38
GRCh371257,637,241 - 57,644,970 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,923,509 - 55,931,236 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341255,923,508 - 55,931,236NCBI
Celera1257,291,469 - 57,299,250 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,676,118 - 54,683,830 (-)NCBIHuRef
CHM1_11257,605,339 - 57,613,080 (-)NCBICHM1_1
T2T-CHM13v2.01257,211,695 - 57,219,414 (-)NCBIT2T-CHM13v2.0
Stac3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,337,505 - 127,344,692 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,337,555 - 127,344,692 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3810127,501,617 - 127,508,823 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,501,686 - 127,508,823 (+)Ensemblmm10GRCm38
MGSCv3710126,938,773 - 126,945,871 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610126,904,666 - 126,911,764 (+)NCBIMGSCv36mm8
Celera10129,893,229 - 129,900,583 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
Stac3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,971,450 - 4,980,262 (-)Ensembl
ChiLan1.0NW_0049554584,971,450 - 4,980,262 (-)NCBIChiLan1.0ChiLan1.0
STAC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,087,303 - 37,100,817 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,083,577 - 37,094,995 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,674,537 - 31,683,917 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,928,955 - 31,936,257 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,928,955 - 31,936,251 (+)EnsemblpanPan2panpan1.1
STAC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,370,340 - 1,377,769 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,434,018 - 1,441,443 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0101,380,726 - 1,388,155 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1101,357,308 - 1,364,738 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,599,294 - 1,606,729 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,724,219 - 1,731,673 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stac3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,424,374 - 57,433,731 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,436,425 - 1,443,595 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,436,505 - 1,444,712 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,549,010 - 22,719,054 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1522,549,008 - 22,556,330 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,376,741 - 24,390,343 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STAC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,149,572 - 53,163,036 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,154,755 - 53,163,090 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037192,809,786 - 192,817,153 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stac3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,695,870 - 10,704,334 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480210,694,539 - 10,704,320 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Stac3
8 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:203
Count of miRNA genes:141
Interacting mature miRNAs:157
Transcripts:ENSRNOT00000010639
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat

Markers in Region
RH133730  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2763,350,363 - 63,350,564 (+)MAPPERmRatBN7.2
Rnor_6.0770,815,045 - 70,815,245NCBIRnor6.0
Rnor_5.0770,988,430 - 70,988,630UniSTSRnor5.0
RGSC_v3.4767,485,684 - 67,485,884UniSTSRGSC3.4
Celera760,489,296 - 60,489,496UniSTS
Cytogenetic Map7q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 12 61 142 91 90 59 59 59 6 293 153 11 115 61 77 31 8 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001130558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000010639   ⟹   ENSRNOP00000010639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl765,228,352 - 65,235,871 (+)Ensembl
mRatBN7.2 Ensembl763,343,186 - 63,350,589 (+)Ensembl
Rnor_6.0 Ensembl770,807,867 - 70,815,270 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148777   ⟹   ENSRNOP00000110246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl765,228,452 - 65,235,878 (+)Ensembl
RefSeq Acc Id: NM_001130558   ⟹   NP_001124030
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,228,475 - 65,235,878 (+)NCBI
mRatBN7.2763,343,186 - 63,350,589 (+)NCBI
Rnor_6.0770,807,867 - 70,815,270 (+)NCBI
Rnor_5.0770,981,174 - 70,988,656 (+)NCBI
RGSC_v3.4767,478,506 - 67,485,909 (+)RGD
Celera760,482,101 - 60,489,521 (+)RGD
Sequence:
RefSeq Acc Id: XM_006241486   ⟹   XP_006241548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,228,369 - 65,235,884 (+)NCBI
mRatBN7.2763,343,085 - 63,350,590 (+)NCBI
Rnor_6.0770,807,428 - 70,815,271 (+)NCBI
Rnor_5.0770,981,174 - 70,988,656 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241488   ⟹   XP_006241550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,228,371 - 65,235,884 (+)NCBI
mRatBN7.2763,343,088 - 63,350,590 (+)NCBI
Rnor_6.0770,807,428 - 70,815,271 (+)NCBI
Rnor_5.0770,981,174 - 70,988,656 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765415   ⟹   XP_008763637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,228,367 - 65,235,884 (+)NCBI
mRatBN7.2763,343,448 - 63,350,590 (+)NCBI
Rnor_6.0770,808,069 - 70,815,271 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594944   ⟹   XP_017450433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,228,363 - 65,235,884 (+)NCBI
mRatBN7.2763,343,078 - 63,350,590 (+)NCBI
Rnor_6.0770,807,427 - 70,815,271 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063263829   ⟹   XP_063119899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,227,157 - 65,235,884 (+)NCBI
RefSeq Acc Id: XM_063263830   ⟹   XP_063119900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,228,359 - 65,235,884 (+)NCBI
RefSeq Acc Id: XM_063263831   ⟹   XP_063119901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,227,151 - 65,235,884 (+)NCBI
RefSeq Acc Id: NP_001124030   ⟸   NM_001130558
- UniProtKB: D3ZQN6 (UniProtKB/TrEMBL),   A6HQV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241548   ⟸   XM_006241486
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006241550   ⟸   XM_006241488
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008763637   ⟸   XM_008765415
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450433   ⟸   XM_017594944
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000010639   ⟸   ENSRNOT00000010639
RefSeq Acc Id: XP_063119901   ⟸   XM_063263831
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063119899   ⟸   XM_063263829
- Peptide Label: isoform X1
- UniProtKB: A6HQV7 (UniProtKB/TrEMBL),   D3ZQN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119900   ⟸   XM_063263830
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000110246   ⟸   ENSRNOT00000148777
Protein Domains
Phorbol-ester/DAG-type   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQN6-F1-model_v2 AlphaFold D3ZQN6 1-361 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695261
Promoter ID:EPDNEW_R5786
Type:initiation region
Name:Stac3_1
Description:SH3 and cysteine rich domain 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0770,807,886 - 70,807,946EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308964 AgrOrtholog
BioCyc Gene G2FUF-33738 BioCyc
Ensembl Genes ENSRNOG00000008050 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010639 ENTREZGENE
  ENSRNOT00000010639.5 UniProtKB/TrEMBL
  ENSRNOT00000148777 ENTREZGENE
Gene3D-CATH 3.30.60.20 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro C1-like_sf UniProtKB/TrEMBL
  Prot_Kinase_C-like_PE/DAG-bd UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  STAC1/2/3 UniProtKB/TrEMBL
  Stac3_SH3_1 UniProtKB/TrEMBL
KEGG Report rno:362895 UniProtKB/TrEMBL
NCBI Gene 362895 ENTREZGENE
PANTHER PTHR15135 UniProtKB/TrEMBL
  SH3 AND CYSTEINE-RICH DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
  STAC2_u1 UniProtKB/TrEMBL
PhenoGen Stac3 PhenoGen
PRINTS P67PHOX UniProtKB/TrEMBL
  SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008050 RatGTEx
SMART SH3 UniProtKB/TrEMBL
  SM00109 UniProtKB/TrEMBL
Superfamily-SCOP SH3 UniProtKB/TrEMBL
  SSF57889 UniProtKB/TrEMBL
UniProt A6HQV7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQN6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Stac3  SH3 and cysteine rich domain 3   Stac3_predicted  SH3 and cysteine rich domain 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Stac3_predicted  SH3 and cysteine rich domain 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED