Sdr9c7 (short chain dehydrogenase/reductase family 9C, member 7) - Rat Genome Database

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Gene: Sdr9c7 (short chain dehydrogenase/reductase family 9C, member 7) Rattus norvegicus
Analyze
Symbol: Sdr9c7
Name: short chain dehydrogenase/reductase family 9C, member 7
RGD ID: 628716
Description: Predicted to enable all-trans-retinol dehydrogenase (NAD+) activity. Predicted to be involved in retinol metabolic process and steroid metabolic process. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 13. Orthologous to human SDR9C7 (short chain dehydrogenase/reductase family 9C member 7); INTERACTS WITH bisphenol A; thioacetamide; (1->4)-beta-D-glucan (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: orphan short chain dehydrogenase/reductase; orphan short-chain dehydrogenase / reductase; Rdh20; Rdhs; retinol dehydrogenase 20; retinol dehydrogenase similar protein; Sdr-o; Sdro; short-chain dehydrogenase/reductase family 9C member 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,588,726 - 65,607,534 (+)NCBIGRCr8
mRatBN7.2763,703,788 - 63,720,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,707,071 - 63,721,480 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0771,152,366 - 71,169,510 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl771,157,664 - 71,170,511 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,324,590 - 71,341,643 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,850,985 - 67,863,306 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,875,496 - 67,883,938 (+)NCBI
Celera760,836,062 - 60,853,128 (+)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Identification of a mouse short-chain dehydrogenase/reductase gene, retinol dehydrogenase-similar. Function of non-catalytic amino acid residues in enzyme activity. Song MS, etal., J Biol Chem 2003 Oct 10;278(41):40079-87. Epub 2003 Jul 10.
Additional References at PubMed
PMID:19703561  


Genomics

Comparative Map Data
Sdr9c7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,588,726 - 65,607,534 (+)NCBIGRCr8
mRatBN7.2763,703,788 - 63,720,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,707,071 - 63,721,480 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0771,152,366 - 71,169,510 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl771,157,664 - 71,170,511 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,324,590 - 71,341,643 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,850,985 - 67,863,306 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,875,496 - 67,883,938 (+)NCBI
Celera760,836,062 - 60,853,128 (+)NCBICelera
Cytogenetic Map7q22NCBI
SDR9C7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,923,133 - 56,934,408 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,923,133 - 56,934,408 (-)EnsemblGRCh38hg38GRCh38
GRCh371257,316,917 - 57,328,192 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,603,884 - 55,614,312 (-)NCBINCBI36Build 36hg18NCBI36
Build 341255,603,883 - 55,614,312NCBI
Celera1256,970,828 - 56,982,079 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,355,696 - 54,366,948 (-)NCBIHuRef
CHM1_11257,284,687 - 57,295,939 (-)NCBICHM1_1
T2T-CHM13v2.01256,891,006 - 56,902,282 (-)NCBIT2T-CHM13v2.0
Sdr9c7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,734,404 - 127,747,630 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,734,387 - 127,747,630 (+)EnsemblGRCm39 Ensembl
GRCm3810127,898,535 - 127,911,761 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,898,518 - 127,911,761 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,335,591 - 127,348,817 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,301,484 - 127,314,710 (+)NCBIMGSCv36mm8
Celera10130,293,174 - 130,306,875 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.39NCBI
Sdr9c7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,537,943 - 4,551,704 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554584,538,113 - 4,551,586 (-)NCBIChiLan1.0ChiLan1.0
SDR9C7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,397,296 - 37,408,615 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,394,066 - 37,405,385 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,983,412 - 31,994,584 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,236,402 - 32,247,688 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,236,402 - 32,247,688 (+)Ensemblpanpan1.1panPan2
SDR9C7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,112,832 - 1,121,238 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,112,896 - 1,120,720 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,177,259 - 1,185,147 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,123,804 - 1,131,692 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,123,868 - 1,132,058 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,100,717 - 1,108,622 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,342,554 - 1,350,459 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,467,318 - 1,475,223 (-)NCBIUU_Cfam_GSD_1.0
Sdr9c7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,687,192 - 57,699,891 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,171,736 - 1,182,929 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,170,855 - 1,190,797 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDR9C7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,228,042 - 22,244,528 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,228,041 - 22,251,622 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,109,291 - 24,130,717 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SDR9C7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,819,041 - 52,831,778 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,819,957 - 52,830,249 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,137,169 - 193,158,153 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sdr9c7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,008,800 - 11,019,788 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480211,008,727 - 11,020,651 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sdr9c7
53 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:83
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000005919
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat

Markers in Region
RH134392  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2763,676,163 - 63,676,343 (+)MAPPERmRatBN7.2
Rnor_6.0771,125,506 - 71,125,685NCBIRnor6.0
Rnor_5.0771,297,506 - 71,297,685UniSTSRnor5.0
RGSC_v3.4767,818,518 - 67,818,697UniSTSRGSC3.4
Celera760,810,314 - 60,810,493UniSTS
Cytogenetic Map7q22UniSTS
BE106097  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2763,714,099 - 63,714,311 (+)MAPPERmRatBN7.2
Rnor_6.0771,163,151 - 71,163,362NCBIRnor6.0
Rnor_5.0771,335,151 - 71,335,362UniSTSRnor5.0
RGSC_v3.4767,856,449 - 67,856,660UniSTSRGSC3.4
Celera760,846,847 - 60,847,058UniSTS
Cytogenetic Map7q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 10 33 17 19 17 8 9 11 11 11 11 8
Low 33 24 24 24 2 63 24 30
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006226054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY044435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000005919   ⟹   ENSRNOP00000005919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl763,707,071 - 63,721,480 (+)Ensembl
Rnor_6.0 Ensembl771,157,664 - 71,170,511 (+)Ensembl
RefSeq Acc Id: XM_006241515   ⟹   XP_006241577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,588,726 - 65,607,534 (+)NCBI
mRatBN7.2763,703,788 - 63,720,325 (+)NCBI
Rnor_6.0771,152,366 - 71,169,510 (+)NCBI
Rnor_5.0771,324,590 - 71,341,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241516   ⟹   XP_006241578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,588,727 - 65,607,534 (+)NCBI
mRatBN7.2763,703,789 - 63,720,325 (+)NCBI
Rnor_6.0771,152,367 - 71,169,510 (+)NCBI
Rnor_5.0771,324,590 - 71,341,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765432   ⟹   XP_008763654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,588,727 - 65,607,534 (+)NCBI
mRatBN7.2763,703,789 - 63,720,325 (+)NCBI
Rnor_6.0771,152,367 - 71,169,510 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595219   ⟹   XP_017450708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,588,727 - 65,607,534 (+)NCBI
mRatBN7.2763,703,789 - 63,720,325 (+)NCBI
Rnor_6.0771,152,367 - 71,169,510 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039080513   ⟹   XP_038936441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,588,758 - 65,607,534 (+)NCBI
mRatBN7.2763,703,795 - 63,720,325 (+)NCBI
RefSeq Acc Id: XM_039080514   ⟹   XP_038936442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,594,012 - 65,607,534 (+)NCBI
mRatBN7.2763,708,778 - 63,720,325 (+)NCBI
RefSeq Acc Id: XM_063264604   ⟹   XP_063120674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8765,588,727 - 65,607,534 (+)NCBI
RefSeq Acc Id: XP_006241578   ⟸   XM_006241516
- Peptide Label: isoform X1
- UniProtKB: F1MAS7 (UniProtKB/TrEMBL),   A6HQX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241577   ⟸   XM_006241515
- Peptide Label: isoform X1
- UniProtKB: F1MAS7 (UniProtKB/TrEMBL),   A6HQX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763654   ⟸   XM_008765432
- Peptide Label: isoform X1
- UniProtKB: F1MAS7 (UniProtKB/TrEMBL),   A6HQX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450708   ⟸   XM_017595219
- Peptide Label: isoform X1
- UniProtKB: F1MAS7 (UniProtKB/TrEMBL),   A6HQX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005919   ⟸   ENSRNOT00000005919
RefSeq Acc Id: XP_038936441   ⟸   XM_039080513
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038936442   ⟸   XM_039080514
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063120674   ⟸   XM_063264604
- Peptide Label: isoform X1
- UniProtKB: A6HQX8 (UniProtKB/TrEMBL),   F1MAS7 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAS7-F1-model_v2 AlphaFold F1MAS7 1-313 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695281
Promoter ID:EPDNEW_R5797
Type:single initiation site
Name:Sdr9c7_1
Description:short chain dehydrogenase/reductase family 9C, member 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0771,157,759 - 71,157,819EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628716 AgrOrtholog
BioCyc Gene G2FUF-33714 BioCyc
Ensembl Genes ENSRNOG00000004459 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005919.6 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro Glc/ribitol_DH UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Sc_DH/Rdtase_CS UniProtKB/TrEMBL
KEGG Report rno:259235 UniProtKB/TrEMBL
NCBI Gene 259235 ENTREZGENE
PANTHER PTHR43313:SF5 UniProtKB/TrEMBL
  SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C UniProtKB/TrEMBL
Pfam adh_short UniProtKB/TrEMBL
PhenoGen Sdr9c7 PhenoGen
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
PROSITE ADH_SHORT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004459 RatGTEx
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A6HQX8 ENTREZGENE, UniProtKB/TrEMBL
  F1MAS7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-07 Sdr9c7  short chain dehydrogenase/reductase family 9C, member 7  Sdr-o  orphan short-chain dehydrogenase / reductase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Sdr-o  orphan short-chain dehydrogenase / reductase  Rdh20  retinol dehydrogenase 20  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-11 Rdh20  retinol dehydrogenase 20  Sdro  orphan short chain dehydrogenase/reductase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Sdro  orphan short chain dehydrogenase/reductase  Rdhs  retinol dehydrogenase similar protein  Symbol and Name updated 1299863 APPROVED