Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Liver Neoplasms | | ISO | ABTB3 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19233941 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Liver Neoplasms | | ISO | ABTB3 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19233941 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
3. | GOA pipeline | RGD automated data pipeline |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Abtb3 (Rattus norvegicus - Norway rat) |
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ABTB3 (Homo sapiens - human) |
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Abtb3 (Mus musculus - house mouse) |
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Abtb3 (Chinchilla lanigera - long-tailed chinchilla) |
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ABTB3 (Pan paniscus - bonobo/pygmy chimpanzee) |
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ABTB3 (Canis lupus familiaris - dog) |
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Abtb3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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ABTB3 (Sus scrofa - pig) |
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ABTB3 (Chlorocebus sabaeus - green monkey) |
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Abtb3 (Heterocephalus glaber - naked mole-rat) |
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Variants in Abtb3
2112 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D7Rat35 |
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D7Rat155 |
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AU049755 |
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RH140753 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 2 | 28 | 16 | 4 | |||||||||
Low | 3 | 43 | 35 | 21 | 19 | 21 | 8 | 9 | 46 | 19 | 32 | 11 | 8 |
Below cutoff | 20 | 20 | 20 | 2 | 5 |
RefSeq Transcripts | XM_008765291 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_017603335 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039080069 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039080070 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039080071 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063264583 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063264584 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063264585 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063264587 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063264588 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC112739 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC118318 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473960 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000007 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000008596 ⟹ ENSRNOP00000008596 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000044331 ⟹ ENSRNOP00000045550 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000103143 ⟹ ENSRNOP00000093255 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039080069 ⟹ XP_038935997 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039080070 ⟹ XP_038935998 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039080071 ⟹ XP_038935999 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063264583 ⟹ XP_063120653 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063264584 ⟹ XP_063120654 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063264585 ⟹ XP_063120655 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063264587 ⟹ XP_063120657 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063264588 ⟹ XP_063120658 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | XP_038935997 | (Get FASTA) | NCBI Sequence Viewer |
XP_038935998 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038935999 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063120653 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063120654 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063120655 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063120657 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063120658 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDM17110 | (Get FASTA) | NCBI Sequence Viewer |
EDM17111 | (Get FASTA) | NCBI Sequence Viewer | |
EDM17112 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000008596.6 | ||
ENSRNOP00000045550 | |||
ENSRNOP00000045550.6 | |||
ENSRNOP00000093255 | |||
ENSRNOP00000093255.1 |
RefSeq Acc Id: | ENSRNOP00000008596 ⟸ ENSRNOT00000008596 |
RefSeq Acc Id: | ENSRNOP00000045550 ⟸ ENSRNOT00000044331 |
RefSeq Acc Id: | XP_038935998 ⟸ XM_039080070 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I6AJE8 (UniProtKB/TrEMBL), D3Z9Y5 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038935997 ⟸ XM_039080069 |
- Peptide Label: | isoform X1 |
- UniProtKB: | D4AC89 (UniProtKB/TrEMBL), D3Z9Y5 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038935999 ⟸ XM_039080071 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | ENSRNOP00000093255 ⟸ ENSRNOT00000103143 |
RefSeq Acc Id: | XP_063120654 ⟸ XM_063264584 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063120653 ⟸ XM_063264583 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_063120657 ⟸ XM_063264587 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_063120655 ⟸ XM_063264585 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_063120658 ⟸ XM_063264588 |
- Peptide Label: | isoform X8 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D4AC89-F1-model_v2 | AlphaFold | D4AC89 | 1-1109 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1308647 | AgrOrtholog |
BioCyc Gene | G2FUF-34633 | BioCyc |
Ensembl Genes | ENSRNOG00000005758 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000008596.8 | UniProtKB/TrEMBL |
ENSRNOT00000044331.7 | UniProtKB/TrEMBL | |
ENSRNOT00000103143.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.20.10 | UniProtKB/TrEMBL |
1.25.40.20 | UniProtKB/TrEMBL | |
InterPro | Ankyrin_rpt | UniProtKB/TrEMBL |
Ankyrin_rpt-contain_sf | UniProtKB/TrEMBL | |
BTB/POZ_dom | UniProtKB/TrEMBL | |
BTBD11_BACK | UniProtKB/TrEMBL | |
Histone-fold | UniProtKB/TrEMBL | |
SKP1/BTB/POZ_sf | UniProtKB/TrEMBL | |
NCBI Gene | 314675 | ENTREZGENE |
PANTHER | ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING | UniProtKB/TrEMBL |
ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN BTBD11 | UniProtKB/TrEMBL | |
Pfam | Ank | UniProtKB/TrEMBL |
Ank_2 | UniProtKB/TrEMBL | |
BTB | UniProtKB/TrEMBL | |
PhenoGen | Abtb3 | PhenoGen |
PROSITE | ANK_REP_REGION | UniProtKB/TrEMBL |
ANK_REPEAT | UniProtKB/TrEMBL | |
BTB | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000005758 | RatGTEx |
SMART | ANK | UniProtKB/TrEMBL |
BTB | UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF47113 | UniProtKB/TrEMBL |
SSF48403 | UniProtKB/TrEMBL | |
SSF54695 | UniProtKB/TrEMBL | |
UniProt | A0A8I6AJE8 | ENTREZGENE, UniProtKB/TrEMBL |
D3Z9Y5 | ENTREZGENE, UniProtKB/TrEMBL | |
D4AC89 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2022-05-27 | Abtb3 | ankyrin repeat and BTB domain containing 3 | Btbd11 | BTB domain containing 11 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2016-02-17 | Btbd11 | BTB domain containing 11 | Btbd11 | BTB (POZ) domain containing 11 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | Btbd11 | BTB (POZ) domain containing 11 | Btbd11_predicted | BTB (POZ) domain containing 11 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Btbd11_predicted | BTB (POZ) domain containing 11 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |