Gene: LOC102548260 (uncharacterized LOC102548260) Rattus norvegicus |
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Analyze |
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Symbol: |
LOC102548260 |
Name: |
uncharacterized LOC102548260 |
RGD ID: |
7515236 |
Description: |
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Type: |
ncrna
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RefSeq Status: |
MODEL |
Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 7 | 28,498,101 - 28,591,490 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 7 | 26,610,925 - 26,704,322 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | Rnor_6.0 | 7 | 32,918,950 - 33,012,777 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 7 | 32,998,596 - 33,090,168 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 7 | 23,728,805 - 23,821,507 (-) | NCBI | | Celera | | | Cytogenetic Map | 7 | q13 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
QTLs in Region (mRatBN7.2)
1354644 | Spl4 | Serum phospholipid level QTL 4 | 4.9 | | blood phospholipid amount (VT:0006084) | blood phospholipid level (CMO:0001169) | 7 | 19654317 | 49753746 | Rat | 7411569 | Bw137 | Body weight QTL 137 | | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 7 | 21921195 | 66921195 | Rat | 9590102 | Sffal5 | Serum free fatty acids level QTL 5 | 8.62 | 0.001 | blood free fatty acid amount (VT:0001553) | plasma free fatty acids level (CMO:0000546) | 7 | 5329019 | 50329019 | Rat | 1578652 | Bmd15 | Bone mineral density QTL 15 | 5.2 | | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 7 | 9866467 | 60460686 | Rat | 1641885 | Alcrsp9 | Alcohol response QTL 9 | | | alcohol metabolism trait (VT:0015089) | blood ethanol level (CMO:0000535) | 7 | 24099606 | 69099606 | Rat | 631503 | Bp102 | Blood pressure QTL 102 | 1.9 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 7 | 1 | 44822433 | Rat | 1549840 | Bss5 | Bone structure and strength QTL 5 | 9.8 | | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 7 | 24751841 | 69751841 | Rat | 10755438 | Coatc9 | Coat color QTL 9 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 3529280 | 48529280 | Rat | 2298547 | Neuinf5 | Neuroinflammation QTL 5 | 3.7 | | nervous system integrity trait (VT:0010566) | spinal cord Cd74 protein level (CMO:0002131) | 7 | 9462246 | 58265113 | Rat | 10059592 | Kidm45 | Kidney mass QTL 45 | 3.95 | 0.025 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 7 | 7573985 | 52573985 | Rat | 2317047 | Wbc4 | White blood cell count QTL 4 | | 0.01 | leukocyte quantity (VT:0000217) | white blood cell count (CMO:0000027) | 7 | 1 | 35342956 | Rat | 10755440 | Coatc10 | Coat color QTL 10 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 7496499 | 52496499 | Rat | 2298550 | Neuinf6 | Neuroinflammation QTL 6 | 3.3 | | nervous system integrity trait (VT:0010566) | spinal cord RT1-B protein level (CMO:0002132) | 7 | 1 | 27829089 | Rat | 1354637 | Scl30 | Serum cholesterol level QTL 30 | 3.7 | | blood cholesterol amount (VT:0000180) | blood total cholesterol level (CMO:0000051) | 7 | 19654317 | 49753746 | Rat | 724560 | Plsm3 | Polydactyly-luxate syndrome (PLS) morphotypes QTL 3 | | 0.0003 | tibia length (VT:0004357) | tibia length (CMO:0000450) | 7 | 1 | 34000259 | Rat | 1354639 | Spl5 | Serum phospholipid level QTL 5 | 3.9 | | blood LDL phospholipid amount (VT:0010505) | blood low density lipoprotein phospholipid level (CMO:0001568) | 7 | 19654317 | 52888450 | Rat | 7411566 | Bw136 | Body weight QTL 136 | 10.4 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 7 | 1 | 31962314 | Rat | 10755451 | Coatc11 | Coat color QTL 11 | | 0 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 7 | 17944357 | 62944357 | Rat | 2317059 | Aia15 | Adjuvant induced arthritis QTL 15 | 2.46 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 7 | 17004598 | 62004598 | Rat | 61410 | Bw19 | Body weight QTL 19 | 6.2 | 0.001 | body mass (VT:0001259) | body weight (CMO:0000012) | 7 | 1 | 44782185 | Rat | 1643004 | Pain2 | Pain QTL 2 | 1 | | mechanical nociception trait (VT:0002734) | self mutilation severity score (CMO:0002145) | 7 | 9462246 | 98011544 | Rat | 2290372 | Gluco33 | Glucose level QTL 33 | 2.71 | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 7 | 20555705 | 29891047 | Rat | 634336 | Anxrr17 | Anxiety related response QTL 17 | 3.66 | | locomotor behavior trait (VT:0001392) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 7 | 924703 | 115097879 | Rat | 9590142 | Scort5 | Serum corticosterone level QTL 5 | 24.4 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 7 | 1 | 31962314 | Rat | 1582260 | Bw72 | Body weight QTL 72 | 3.2 | 0.0043 | body mass (VT:0001259) | body weight (CMO:0000012) | 7 | 15795565 | 38073970 | Rat | 1582261 | Bw69 | Body weight QTL 69 | 3.2 | 0.0048 | body mass (VT:0001259) | body weight (CMO:0000012) | 7 | 15795565 | 38073970 | Rat | 1582262 | Bw75 | Body weight QTL 75 | 3 | 0.0038 | body mass (VT:0001259) | body weight (CMO:0000012) | 7 | 15795565 | 38073970 | Rat | 1300132 | Bp182 | Blood pressure QTL 182 | 3.49 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 7 | 19654317 | 84928080 | Rat | 61369 | Mcs2 | Mammary carcinoma susceptibility QTL 2 | 3.38 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 7 | 19032807 | 35526300 | Rat | 738033 | Anxrr6 | Anxiety related response QTL 6 | 4.1 | | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 7 | 15573889 | 60573889 | Rat | |
Expression
RNA-SEQ Expression
Sequence
RefSeq Acc Id: |
XR_001838797 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,430 (-) | NCBI | mRatBN7.2 | 7 | 26,610,925 - 26,704,059 (-) | NCBI | Rnor_6.0 | 7 | 32,919,739 - 33,011,420 (-) | NCBI |
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Sequence: |
AGCTCATCTGTCTCAGCCCCATTTATTTCTCCTGGGTGATGAGAAGACCTGTGCTTCTCCGTTA AAAGGCACTAGGAAAGAAGGAGTTAAAGTGAAGGCAGGCTCGCTGGTTTGCTGAGATCTGTCAG AGGCTGACTGGCTGGCTACATATCTGTCTCTGGAACAATAGGTACCTGTATTCTGCATGGGCTG CTGGGCAGGCAGTACTAACACTCTGGAGAAGGTCTGCCTCTGTCTGAGCCTTCCTGGTGAGATT CCCCAGTAACAGTCCTACTTTTCAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGTTTGAGGCTGTCTACTCTGTTGATAGAGGACAAAGCTTTGATCA TTTTTGTTCAGGCTTCACTTGGTGAGAGGTTTTAGGTTCTTAGTCTCAAGTCAGTAGTTGTGCT GCCTTCCCCCCCCCTCCCCTTTCTTTCATATTCTCTTTCTGCCGCCCTCCCTCTCTCATTTCTC CTCATAGGTTCAATGCAGGCAGATGAGTGCCACAGCTGTAACTGAGGCGTAGAATAATCAACAC ATCGGAGCCAATCCCCCTGACACCAAGAGGGGAATCCGGCAGAGGTGACCGACCGCGAGGACAA GACCGTTCTTCTGACAAGTTTTAGATACTCATGCTAATGGTGTCACGGAAGAAGCGATGTATCG ACAGCTCAGGATGGCTGCAGGGGACATATTCAGACGTGGCCCAGATTGTCTGCCCATGGGGACT GAGATACCTCTGAGATTTATATCAGATCTCCACAGTCTTTGTCGCTGTATTTTGTTAGAAAGAA AGGCGAGGCTGTTTCTACAGGTGCCACAGAAAAATCGATGCCGAGTCACGGATTATTGGATCCC ACAGAACCATGGAGACTTGGCGGTGAAATTCTTCTAAAGTTTCTTCTGGCTATCAGAGAGTTGA AAGGGGAAAAAAAAATAAAGAGCCAAAGCTGTTTCAACTTCTTGGTTGTTTTACTCCATGGCTT AGCATTCCATCTGCGCAGGCAGAGGTGTTCCTGGTTTGGGAAGTATAAATCCCGCGGGAAGTCA ACTGGAGAACATTTTACGCGTCCGTCACTCATCCTATTATGAGCCTGCTGCTCTTCCTTCTCTG GACAAGCCTAAACTTTAAGATTTGCTGAACAAACCTTGTGTCAAATTTGGACCACCTAGACAGT ATTCCACCCTGATTGTATCCCATGTCACTATTCTGTGCAAGGCCACCGACTAGAAGAGCACAGA ATTATTAAAAAGAAAACAAAAAAAAAAACCAAAAAAAACACAGCTGAAAGTGAACGTCTTTGGA TTTCCCATTTAATGAGTTGGCAGCTAAAGGACAGGAGCAGCAATAAGGCTGCCTGGCTACATTT TCATAGTGCCACCAACTGCGAGTTAAGCTGACAAACATTTTGAGAGCTCGGCCCATTTCATTCA CAGCAGGATGGCAGGAGTTAACTAACACTGTAAAAAAAACCTAACTAAAAATCGTGCCTTTACT GCACATTTGCACAGAATCTCAGGACTGAAAGTGTCGAAGTTCTGCTCGACAAGCGGGTGACTGA TTGTCCCTGCCAGCTGGCTAATATCATAATTAGCAAAGTTGCTACCACATCTGCAAAGTTTAAT CGAAAAATTTACCAGTGGTATGATGGCATTGTCACCATGATCCCAAGGGAATCGGAGTCGACTT CTGCTTCAGGAGGAACGGCAAGGCTGTATAGCTGAGATGAGAAATTGTAAACTTGCTCAGCCAA AGGTTATGCTTCGCATCACCCACCAGGGAGGATCATCTCTCATGAAAACTTTCAAATTTGATTT TGAAAATTTATTCAGAAAAATTTAAGCCACGCTCTTTTTCAACACAGAAAATAATATGCTCCAG AGAATCCTCTAATTCACAGAAAATGGACTCGGATAACATTTGGGTTCTCATACTACCACAGTTC TCTTGAGAAGGACAGCCAGGAGGCTAATAATGAAGGGGCCAGGGAAGGAGGCCAATGCTACAAG GGTTATCTCTCAACCTCAGATGTTGGATAAGTCAGGGAACAGCGTCGTTTCTGGATGGCTTCAG ACAGGCCGGACTGACTGTTTGGAAGAGAAAAACCTGCTTATTCTTTCAAAGGTACATGAATGTT GTCCACACCTTCCCGTCTAAAGGTTAGAATCTTGCCTTAGACAAAGGATGCTCTTGGAGTCCCA CCACACCTAAAACCACGCTTTGAAGGATCTGCCAAGCTCACTTTTAATCATGAGAAAGAAATTA CCCACATGGAGACAGCAGAAAATGAGAAAGGAGAGATCGTGCTGCGAATAATTCCAGCGAGTGC CAAGGGGCTAGTTGAGGAATGGCTTCATGAGGTGAATATCTTAGCTTGTACTTAGAATTTGGTT AGCGTATAATCAGTTTCTCTTTTAGGAGCGAATACAATCCTAAGTGTATTTCCCATCTGAGCAC CGCTCAGGGCATTTATCAGGATGTTGACATATTTAATATCGGCCTCGTCCTCGCCGTTATTTAT GATGACTAATTTTACACTTATAAATATGCAGAAATCGATGTAGGTGGAAAGGCTCTCTGAGCCC CATGTCTGTCGCTAGCCGTCTGTCTTCATGTGCAGCGCTCTGCTAGTGTGGCCTGTCCAGTAAT GTGTGTCTCTGTGTATGTGCGTGCTCTTGTTGTCTCCTCTCCGCTGTGAATGTGCATTGGGAGA ATTAGCCTTATGACAGGATATCAAAAGATGGGCCCAAGACTTTCATTTTTGGAATGGAAAGAAA AAATAATGCGTAACACTTTGTATCACATCAGTTTCAATTCTTCCTGAGAGGGAGGGGGCCAATC AGGTATGAGTCATCACAGGGCAAAGCAACCAGGATTCAAATTGAACATCACCTTCAGTGTCAAA TTAGTTGAAAGTCCCCCTTTTCCTTTACGGTGACTGGCTGAAACCCCTGCCATTATGTCTGTTT GTTTTAAAAGGGTGGGGGGAGCTGCCTGAGTTCATCCACAGTGCCATGTAGCTTTTCTTTGTTT CATTTTTCTAAGGATCAGATCCAAGAAAAATAATAGGTTAGTAATTCAAGACCATCACTACTTA CACGGTTCTCTCCCGGGCATGTCATTTCTTTGGGTGCCAAGTTTCATCAAGATCACTAAGTAAA CAAATGAGCGATAACTTTTTTGCTCCTTTTTTCTTTTAATTTGACTAGGGAGTAAGAACTGGGA AAGTCAAGTGTCTTTATGAGTCACAGAGGAAGAATGCAGGAACCCCCACCCCCACCCCCCAACT TCTGGTCTCAGACTTTGATTTCCCACACAACCAAGTCACGGGATCGCCATGCCAACCTTAAGCA ATTTTGGCTCCCAGCAATCCTGTGCTGGGGAATCTTTCAAACTACCCTTCAATCCGGGTCCAAA GGGCCACAGCACAGACTAGTAGAAAGAGTGCATTATCTGAGAAAGCACCAGGCTGCTTTCCCAT TGGTATATGTGTTTGGTGCCACGGTTAAGCACCGCTGGGGTCTAATACGTGGATGACCCCCTTT ATAGAGTGTGGGGGCTTCTGAGGAAAAGGCAAGCATTGACTAAGAAAAAGAGTCATTCTTCCAT GTGTTTTCATAAAAGGACAAGGCAGGCCTCTTTGAGAGCTTCTGAAAGAGAAGAGGCATGGGAG GAGATGAGCCAGCTGGGGGTGGGTTGTTTTGGGGAGGGGAGCCAGCTGGGGAATGGAGAGAGAG AGAGAGAGGCTGGGGAGATAGCCAGCTGGGAGAAGAGGTAGGATAAAGCCAAGGCACAAAGGTA CAGGCAGATGAGCAGCTGTGTTTATTTGAATACATATCATTTAACCCTCACCTAAAAACAAATT GGAGAGGTTTGGGAGTGCATTAATCTGGACCCAATTAGCATGTCTTTCCCCTTCAAAAGGTGCA ACCTGAGATTAATGAATATCAACCAGAGTTTCAGAAGCAGCACTTAAATCATTTGCATGTTTGT GCATGATAATTGGATTTATGTATGCACTTCCTTTCATTTAACTATTTCCAGTCTCCTTATGAGT GAGTCATACAACCCAAAACTTCATTCGAGTGATTTCTAGGTAGAAATAGCTTACCTAGCATTCT ACCCCTAAGGGGGGAAAAACTCAAGTGGTTGTACATTTTGAATTTGAATACCACATTTCTTTCT TTTATTATTATTTTTTTTAACATAGAGGGCAGTTGATAATAGTGTGGAATGCTGCTGCTTCTGG AGTTGGTAAATAGGCACCACAGATTTATCTTTAAAAGGCTAGGAAAATAAGGAAATTTCCAACA TCAAGCTTTCATGGCTTCCGTGTGGCCACTAGTAAGAGATTTTATAATGCTAGGAACGAGGCCA CTTGAATGCCGCATGGGGAATGTTCTTGGTGTCTGGACCTGTGGCAATTAGATCACAGAGACAT CAGCATCCAGGATGGTTTATGGCATAGTTAGAAATGTGTTTCTATAGAAAGAGATGGGAATGCG GTCAACATCTGTGAACTGCTGTGGACAGGCAAGGAGCATTGTGAACCCTTGATGCTGTGGGTTT GGTCCTTCTCATTTCCTCCCTCCCTCCCTTCCTTCCTTCCTCCCTCCCTCTCTCCC
hide sequence
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RefSeq Acc Id: |
XR_010053210 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,398 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053211 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,408 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053212 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,590,873 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053213 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,403 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053214 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,490 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053215 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,412 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053216 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,402 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053217 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,391 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053218 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,490 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053219 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,419 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053220 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,407 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053221 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,490 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053222 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,490 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053223 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,411 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053224 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,437 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053225 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,490 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053226 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,490 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053227 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,590,873 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053228 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,433 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053229 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,451 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053230 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,490 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053231 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,411 (-) | NCBI |
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RefSeq Acc Id: |
XR_010053232 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 7 | 28,498,101 - 28,591,490 (-) | NCBI |
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2013-12-17 |
LOC102548260 |
uncharacterized LOC102548260 |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
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