LOC102548260 (uncharacterized LOC102548260) - Rat Genome Database

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Gene: LOC102548260 (uncharacterized LOC102548260) Rattus norvegicus
Analyze
Symbol: LOC102548260
Name: uncharacterized LOC102548260
RGD ID: 7515236
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8728,498,101 - 28,591,490 (-)NCBIGRCr8
mRatBN7.2726,610,925 - 26,704,322 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0732,918,950 - 33,012,777 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0732,998,596 - 33,090,168 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera723,728,805 - 23,821,507 (-)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102548260
481 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001838797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_593375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_593376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_593377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_593379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_001838797
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,430 (-)NCBI
mRatBN7.2726,610,925 - 26,704,059 (-)NCBI
Rnor_6.0732,919,739 - 33,011,420 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010053210
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,398 (-)NCBI
RefSeq Acc Id: XR_010053211
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,408 (-)NCBI
RefSeq Acc Id: XR_010053212
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,590,873 (-)NCBI
RefSeq Acc Id: XR_010053213
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,403 (-)NCBI
RefSeq Acc Id: XR_010053214
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,490 (-)NCBI
RefSeq Acc Id: XR_010053215
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,412 (-)NCBI
RefSeq Acc Id: XR_010053216
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,402 (-)NCBI
RefSeq Acc Id: XR_010053217
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,391 (-)NCBI
RefSeq Acc Id: XR_010053218
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,490 (-)NCBI
RefSeq Acc Id: XR_010053219
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,419 (-)NCBI
RefSeq Acc Id: XR_010053220
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,407 (-)NCBI
RefSeq Acc Id: XR_010053221
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,490 (-)NCBI
RefSeq Acc Id: XR_010053222
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,490 (-)NCBI
RefSeq Acc Id: XR_010053223
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,411 (-)NCBI
RefSeq Acc Id: XR_010053224
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,437 (-)NCBI
RefSeq Acc Id: XR_010053225
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,490 (-)NCBI
RefSeq Acc Id: XR_010053226
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,490 (-)NCBI
RefSeq Acc Id: XR_010053227
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,590,873 (-)NCBI
RefSeq Acc Id: XR_010053228
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,433 (-)NCBI
RefSeq Acc Id: XR_010053229
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,451 (-)NCBI
RefSeq Acc Id: XR_010053230
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,490 (-)NCBI
RefSeq Acc Id: XR_010053231
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,411 (-)NCBI
RefSeq Acc Id: XR_010053232
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8728,498,101 - 28,591,490 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-34436 BioCyc
NCBI Gene LOC102548260 ENTREZGENE
PhenoGen LOC102548260 PhenoGen
RNAcentral URS0000CCE7D9 RNACentral
  URS0000CCF2C8 RNACentral
  URS0000CCFB93 RNACentral
  URS0000CCFB9F RNACentral
  URS0000CCFD42 RNACentral
  URS0000CCFEBA RNACentral
  URS0000CCFEC4 RNACentral
  URS0000CD00D8 RNACentral
  URS0000CD09FE RNACentral
  URS0000CD0AA5 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102548260  uncharacterized LOC102548260      Symbol and Name status set to provisional 70820 PROVISIONAL