Cry1 (cryptochrome circadian regulator 1)

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Gene: Cry1 (cryptochrome circadian regulator 1) Rattus norvegicus

Analyze

Symbol:

Cry1

Name:

cryptochrome circadian regulator 1

RGD ID:

735083

Description:

Predicted to enable several functions, including E-box binding activity; FAD binding activity; and enzyme binding activity. Predicted to be involved in several processes, including negative regulation of cell communication; regulation of gluconeogenesis; and regulation of protein ubiquitination. Predicted to act upstream of or within regulation of gluconeogenesis. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in delayed sleep phase syndrome. Orthologous to human CRY1 (cryptochrome circadian regulator 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cryptochrome 1 (photolyase-like); cryptochrome circadian clock 1; cryptochrome-1; MGC124541

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CRY1 (cryptochrome circadian regulator 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Cry1 (cryptochrome 1 (photolyase-like))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cry1 (cryptochrome circadian regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CRY1 (cryptochrome circadian regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CRY1 (cryptochrome circadian regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cry1 (cryptochrome circadian regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CRY1 (cryptochrome circadian regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CRY1 (cryptochrome circadian regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cry1 (cryptochrome circadian regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CRY2 (cryptochrome circadian regulator 2)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	CRY1 (cryptochrome circadian regulator 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cry1 (cryptochrome 1 (photolyase-like))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PHR1	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Danio rerio (zebrafish):	cry1a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	phr6-4	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Danio rerio (zebrafish):	cry1b	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	18,529,823 - 18,594,092 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	18,529,823 - 18,594,091 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	20,497,139 - 20,554,961 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	22,659,833 - 22,717,659 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	22,436,800 - 22,494,621 (+)	NCBI	Rnor_WKY
Rnor_6.0	7	24,534,593 - 24,634,098 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	24,534,615 - 24,634,097 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	24,684,038 - 24,784,329 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	7	26,277,264 - 26,278,124 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	20,643,879 - 20,709,216 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	20,664,607 - 20,729,486 (+)	NCBI
Celera	7	15,758,113 - 15,822,171 (+)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

advanced sleep phase syndrome (ISO)

attention deficit hyperactivity disorder (ISO)

chronic myeloid leukemia (ISO)

COVID-19 (ISO)

delayed sleep phase syndrome (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-epicatechin-3-O-gallate (ISO)

(-)-epigallocatechin 3-gallate (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxynon-2-enal (ISO)

4-nitro-m-cresol (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

aristolochic acid A (EXP)

azoxystrobin (EXP)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

buspirone (EXP)

buta-1,3-diene (ISO)

cadmium dichloride (EXP,ISO)

cefaloridine (EXP)

chloroprene (ISO)

chlorpyrifos (EXP)

cisplatin (ISO)

clobetasol (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

cocaine (ISO)

copper(II) sulfate (ISO)

cortisol (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

dichloromethane (ISO)

diclofenac (ISO)

dimethylarsinic acid (ISO)

dioxygen (ISO)

Enterolactone (ISO)

ethanol (ISO)

fluoxetine (ISO)

folic acid (ISO)

folpet (ISO)

furan (EXP)

gallic acid (ISO)

gallocatechin (ISO)

gentamycin (EXP)

glyphosate (EXP)

haloperidol (ISO)

hydrogen peroxide (ISO)

imidacloprid (EXP)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

melatonin (EXP)

methamphetamine (EXP)

methylarsonic acid (ISO)

mitomycin C (ISO)

Monobutylphthalate (EXP)

monosodium L-glutamate (ISO)

N-acetyl-L-cysteine (ISO)

N-nitrosodimethylamine (EXP,ISO)

nefazodone (EXP)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

phenformin (EXP)

phorbol 13-acetate 12-myristate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

prednisolone (ISO)

resveratrol (ISO)

rotenone (EXP)

silicon dioxide (EXP)

sodium arsenate (ISO)

sodium arsenite (EXP,ISO)

streptozocin (EXP)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

titanium dioxide (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP)

Triptolide (ISO)

troglitazone (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

circadian regulation of gene expression (IBA,ISO,ISS)

circadian rhythm (ISO,ISS)

entrainment of circadian clock by photoperiod (IBA,ISO,ISS)

gluconeogenesis (ISO,ISS)

glucose homeostasis (ISO,ISS)

lipid storage (ISO)

negative regulation of circadian rhythm (ISO,ISS)

negative regulation of DNA-templated transcription (IBA,ISO,ISS)

negative regulation of G protein-coupled receptor signaling pathway (ISO,ISS)

negative regulation of glucocorticoid receptor signaling pathway (ISO,ISS)

negative regulation of glucocorticoid secretion (ISO)

negative regulation of gluconeogenesis (ISO,ISS)

negative regulation of protein ubiquitination (ISO,ISS)

negative regulation of transcription by RNA polymerase II (ISO,ISS)

positive regulation of gluconeogenesis (ISO)

positive regulation of protein ubiquitination (ISO,ISS)

regulation of circadian rhythm (ISO,ISS)

regulation of DNA damage checkpoint (ISO,ISS)

regulation of gluconeogenesis (ISO)

response to activity (ISO,ISS)

response to glucagon (ISO,ISS)

response to insulin (ISO)

response to light stimulus (ISO,ISS)

selective autophagy (ISO)

signal transduction in response to DNA damage (ISO,ISS)

Cellular Component

mitochondrion (ISO)

nucleus (IBA,ISO)

nucleus (ISO)

nucleus (ISO,ISS)

Molecular Function

deoxyribodipyrimidine photo-lyase activity (ISO)

DNA (6-4) photolyase activity (ISO)

DNA binding (IBA)

DNA-binding transcription factor binding (ISO)

double-stranded DNA binding (ISO)

E-box binding (ISO)

FAD binding (IBA)

histone deacetylase binding (ISO)

kinase binding (ISO)

nuclear receptor binding (ISO)

phosphatase binding (ISO)

photoreceptor activity (IEA)

protein binding (ISO)

protein kinase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop.	Kume K, etal., Cell 1999 Jul 23;98(2):193-205.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8909283	PMID:9383998	PMID:9801304	PMID:10217146	PMID:11555636	PMID:11889036	PMID:12024206	PMID:12150932	PMID:12397359	PMID:12477932	PMID:12738229	PMID:12832412
PMID:12843397	PMID:14672706	PMID:15147242	PMID:15226430	PMID:15529004	PMID:17264215	PMID:17310242	PMID:18316400	PMID:18614015	PMID:19129230	PMID:19299583	PMID:19387896
PMID:19605937	PMID:19833968	PMID:20424134	PMID:20852621	PMID:21236481	PMID:21613214	PMID:21768648	PMID:22170608	PMID:22208286	PMID:22894897	PMID:23056261	PMID:23133559
PMID:23418588	PMID:23531614	PMID:23575670	PMID:23616524	PMID:24089055	PMID:24158435	PMID:24378737	PMID:24385426	PMID:24489120	PMID:24619734	PMID:26431207	PMID:28683290
PMID:28751364	PMID:28790135	PMID:29561690	PMID:29894471	PMID:29937374	PMID:36376275

Genomics

Comparative Map Data

Cry1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	18,529,823 - 18,594,092 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	18,529,823 - 18,594,091 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	20,497,139 - 20,554,961 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	22,659,833 - 22,717,659 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	22,436,800 - 22,494,621 (+)	NCBI	Rnor_WKY
Rnor_6.0	7	24,534,593 - 24,634,098 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	24,534,615 - 24,634,097 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	24,684,038 - 24,784,329 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	7	26,277,264 - 26,278,124 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	20,643,879 - 20,709,216 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	20,664,607 - 20,729,486 (+)	NCBI
Celera	7	15,758,113 - 15,822,171 (+)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

CRY1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	106,991,364 - 107,093,549 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	12	106,991,364 - 107,093,549 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	107,385,142 - 107,487,327 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	105,909,272 - 106,011,455 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	105,887,608 - 105,989,792	NCBI
Celera	12	107,050,701 - 107,153,165 (-)	NCBI		Celera
Cytogenetic Map	12	q23.3	NCBI
HuRef	12	104,445,641 - 104,548,152 (-)	NCBI		HuRef
CHM1_1	12	107,350,774 - 107,453,198 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	106,954,997 - 107,057,182 (-)	NCBI		T2T-CHM13v2.0

Cry1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	84,967,564 - 85,020,918 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	84,967,564 - 85,020,928 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	85,131,700 - 85,185,054 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	85,131,700 - 85,185,064 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	84,594,445 - 84,647,799 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	84,561,499 - 84,614,853 (-)	NCBI		MGSCv36	mm8
Celera	10	87,108,048 - 87,162,027 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	41.63	NCBI

Cry1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	40,874,322 - 40,941,664 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	40,878,227 - 40,941,664 (-)	NCBI	ChiLan1.0	ChiLan1.0

CRY1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	107,952,836 - 108,052,484 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	107,954,262 - 108,052,484 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	104,558,874 - 104,658,833 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

CRY1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	31,681,098 - 31,792,995 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	31,681,288 - 31,780,306 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	31,665,919 - 31,778,539 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	32,522,572 - 32,634,406 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	32,522,596 - 32,623,626 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	32,259,347 - 32,370,641 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	32,549,505 - 32,661,061 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	32,735,159 - 32,847,092 (+)	NCBI		UU_Cfam_GSD_1.0

Cry1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	14,918,737 - 14,984,383 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	7,929,138 - 7,995,579 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936492	7,929,138 - 7,994,797 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CRY1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	13,275,545 - 13,364,593 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	13,275,265 - 13,429,566 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	13,128,680 - 13,217,202 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CRY1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	102,200,822 - 102,306,165 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	102,204,224 - 102,306,182 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	142,748,733 - 142,851,088 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cry1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624750	2,465,999 - 2,529,251 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cry1
248 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	85
Count of miRNA genes:	63
Interacting mature miRNAs:	77
Transcripts:	ENSRNOT00000009124
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	27829089	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	31962314	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	31962314	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34000259	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	35342956	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	664270	26029351	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	9462246	58265113	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	9866467	60460686	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	15573889	60573889	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	15795565	38073970	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	17004598	62004598	Rat
10755451	Coatc11	Coat color QTL 11		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	17944357	62944357	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	18169505	26029351	Rat

Markers in Region

AI412155

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	18,593,956 - 18,594,053 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	24,633,963 - 24,634,059	NCBI	Rnor6.0
Rnor_5.0	7	24,784,194 - 24,784,290	UniSTS	Rnor5.0
RGSC_v3.4	7	20,709,081 - 20,709,177	UniSTS	RGSC3.4
Celera	7	15,822,036 - 15,822,132	UniSTS
Cytogenetic Map	7	q13	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		12	13	10	5	10			57	18	34	1
Low	3	31	44	31	14	31	8	11	17	17	7	10	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_198750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF545855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC107677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000009124 ⟹ ENSRNOP00000009124

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	18,529,823 - 18,594,091 (+)	Ensembl
Rnor_6.0 Ensembl	7	24,534,615 - 24,634,097 (+)	Ensembl

RefSeq Acc Id:

NM_198750 ⟹ NP_942045

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	18,529,823 - 18,594,092 (+)	NCBI
Rnor_6.0	7	24,534,615 - 24,634,098 (+)	NCBI
Rnor_5.0	7	26,277,264 - 26,278,124 (-)	NCBI
RGSC_v3.4	7	20,643,879 - 20,709,216 (+)	RGD
Celera	7	15,758,113 - 15,822,171 (+)	RGD

Sequence:

show sequence

CCCGCGGCCTGGAGCTCTAGCCCGCGCTATCCGAGCTCGCTGCCCACTCTGGGGCGCACAGGCC
GCGTCGCGCGGAGGCCGCGGAAGCTCGTGTCGGTCCGTGGAGGCCGCCTGGGGCGCGCCACCGT
CTCCTCGCGGGCCGCCTCGGTTGGGCGAGCTTTCCGTGACGAGCCTCCCGGGGCTGCTGCGGCC
AGCTCGGGCCGTCGTGGCGGCTCGAGCCCCGCGCGCTCGCTTGTACTCCGGGGGTCCCAGGCCC
TGGAAGGTATGCGTGTCCTCCGGACGCTGGGCGCGGGCTCCTGAAGGACGTCGCGCGTGGATCC
CGGAGCCTCGGCAGCCTCCATTCATCTGCCAGCTGCGCGCTCGCCGCCTCCGCGCCCCGCCTCG
GCGTCGCCTCCTCCCGTCCCCTCTCTGCCGCCCTTTCCCCACTCCTCGCGTGAGGAGGTTCTCC
TGGAAGCGCAGGTGTCGGTTATGAGCCCGACTTCCCTCGCTTGAAGCTCTCGGTAGAAGAAGTC
GGGGTGACCCGCCGCGCCCCGAGCATGGGGGTGAACGCCGTGCATTGGTTCCGAAAGGGACTCC
GGCTGCACGACAACCCCGCCCTGAAGGAGTGCATCCAGGGCGCCGACACCATCCGCTGCGTGTA
CATCCTCGACCCCTGGTTCGCCGGCTCTTCCAACGTGGGCATCAACAGGTGGCGATTTTTGCTT
CAGTGTCTTGAGGACCTTGATGCCAATCTACGAAAGTTAAATTCTCGCCTGTTTGTGATCCGGG
GACAGCCAGCTGACGTGTTTCCGAGGCTTTTCAAGGAATGGAATATTACTAAACTTTCAATTGA
GTACGATTCTGAGCCTTTTGGGAAGGAACGAGATGCGGCCATCAAGAAGCTGGCCACTGAGGCT
GGTGTGGAAGTCATCGTGCGCATTTCACACACACTGTATGACCTAGACAAGATCATAGAACTCA
ATGGTGGGCAGCCACCCCTAACATACAAAAGGTTTCAGACTCTCGTCAGCAAAATGGAGCCCCT
GGAGATGCCAGCAGACACCATCACATCAGACGTGATAGGGAAGTGCACAACCCCTCTGTCCGAC
GACCATGATGAGAAGTACGGAGTTCCTTCCCTGGAGGAGCTCGGTTTTGATACCGATGGCTTGT
CCTCTGCGGTGTGGCCAGGAGGAGAAACTGAGGCACTTACACGTTTGGAAAGGCATTTGGAAAG
AAAGGCCTGGGTGGCAAACTTTGAAAGACCTCGAATGAATGCAAACTCCCTGCTCGCAAGCCCA
ACTGGACTGAGTCCTTATCTCCGCTTCGGTTGTTTGTCATGTCGGCTATTTTATTTCAAACTAA
CAGATCTCTACAAAAAGGTAAAGAAAAATAGTTCCCCTCCCCTTTCTCTTTATGGGCAACTCCT
GTGGCGTGAATTTTTTTATACAGCAGCCACAAACAACCCACGCTTTGACAAAATGGAAGGGAAC
CCCATCTGTGTTCAAATCCCTTGGGACAAGAATCCCGAGGCTCTGGCCAAATGGGCAGAAGGCC
GGACAGGCTTTCCGTGGATTGACGCCATCATGACACAGCTTCGTCAGGAGGGCTGGATCCACCA
TCTAGCCCGACATGCAGTTGCCTGTTTCCTGACCCGCGGCGACCTATGGATCAGTTGGGAAGAA
GGGATGAAGGTCTTTGAAGAATTACTGCTTGACGCCGACTGGAGCATCAATGCTGGGAGTTGGA
TGTGGCTGTCCTGCAGTTCCTTTTTCCAACAGTTTTTCCACTGCTACTGCCCTGTTGGTTTTGG
TAGGAGGACAGACCCCAATGGAGACTATATTAGGCGTTATTTGCCTGTCCTAAGAGGCTTCCCT
GCAAAATATATCTACGATCCTTGGAATGCACCAGAAGGTATCCAGAAGGTAGCCAAATGTTTGA
TAGGCGTTAATTATCCCAAACCAATGGTGAACCATGCCGAGGCAAGTCGACTGAATATTGAAAG
AATGAAGCAGATCTATCAGCAGCTCTCCCGCTACAGAGGGCTAGGCCTCCTTGCCTCAGTCCCT
TCTAATCCTAATGGGAACGGAGGGCTCATGGGCTATGCTCCTGGAGAGAATGTCCCCAGCGGTG
GCAGTGGTGGCGGAAACTGCTCTCAAGGAAGTGGTATTTTACACTATGCTCACGGAGACAGTCA
GCAAACTAACCCACTAAAGCAAGGAAGAAGCTCCATGGGCACTGGCCTCAGCAGCGGGAAGCGC
CCAAGTCAGGAAGAGGACGCACAGAGTGTTGGCCCCAAAGTCCAGCGACAGAGCAGTAACTGAT
ACGAAAGCATGCGGGAGGAGTCCTCGCAGCTGAAGTTGGTGGGAGAGTCAGTACTTCTCATTTA
AATTATTTAAAAATGTCATTCATTCATGGAAAACAGTTATATTTCGAACATATTATTTCTAATA
TTTCTGTGGTTTTTAACTTTTTAATGAATGTCACATAGGACAAGTGGTAATTTGTATATAAAGA
ACTTGGTAAAAAATTTGCTTAATGTAAATATAGCCACAGTTAGAATAGACTCATCAGTATATTT
TTGATAATTTTTCATGTATGGTAAAAGTTAAAGTTAACAGATATTCTGATATAAATCTCAAGAG
TTTTGAGAGTCATTGTGGGAAAATGGGAAGTTTTTAGACTTTCTTAAAAAGACTTTGTTAAAAT
TTTAGGACACATTTTTCCAGACATCATTGTTTGACCTAATTTTGCAGTCTTTGATAATACTGCT
TTAGAAGCTCCGTGGAATCAGTGCGAACGCTCCTGTCTGCGTGGACAGTCTGTGTTACAGCCCG
TGCAGCTGCTCTGACTCGCACTGTGCACTGTGCCCAGCCCCTTTGTCTCCCTCCTTGTTCATTT
CCAGCTACCGTGACTTTGTTATTAAAGTATATGCAAATATGGAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008765225 ⟹ XP_008763447

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	18,530,328 - 18,594,092 (+)	NCBI
Rnor_6.0	7	24,534,593 - 24,634,098 (+)	NCBI

Sequence:

show sequence

CCGGTGACCGGCCGGCGAGTGTCCCGCGGCCTGGAGCTCTAGCCCGCGCTATCCGAGCTCGCTG
CCCACTCTGGGGCGCACAGGCCGCGTCGCGCGGAGGCCGCGGAAGCTCGTGTCGGTCCGTGGAG
GCCGCCTGGGGCGCGCCACCGTCTCCTCGCGGGCCGCCTCGGTTGGGCGAGCTTTCCGTGACGA
GCCTCCCGGGGCTGCTGCGGCCAGCTCGGGCCGTCGTGGCGGCTCGAGCCCCGCGCGCTCGCTT
GTACTCCGGGGGTCCCAGGCCCTGGAAGGTATGCGTGTCCTCCGGACGCTGGGCGCGGGCTCCT
GAAGGACGTCGCGCGTGGATCCCGGAGCCTCGGCAGCCTCCATTCATCTGCCAGCTGCGCGCTC
GCCGCCTCCGCGCCCCGCCTCGGCGTCGCCTCCTCCCGTCCCCTCTCTGCCGCCCTTTCCCCAC
TCCTCGCGTGAGGAGGTTCTCCTGGAAGCGCAGGTGTCGGTTATGAGCCCGACTTCCCTCGCTT
GAAGCTCTCGGTAGAAGAAGTCGGGGTGACCCGCCGCGCCCCGAGCATGGGGGTGAACGCCGTG
CATTGGTTCCGAAAGGGACTCCGGCTGCACGACAACCCCGCCCTGAAGGAGTGCATCCAGGGCG
CCGACACCATCCGCTGCGTGTACATCCTCGACCCCTGGTTCGCCGGCTCTTCCAACGTGGGCAT
CAACAGGTGGCGATTTTTGCTTCAGTGTCTTGAGGACCTTGATGCCAATCTACGAAAGTTAAAT
TCTCGCCTGTTTGTGATCCGGGGACAGCCAGCTGACGTGTTTCCGAGGCTTTTCAAGGAATGGA
ATATTACTAAACTTTCAATTGAGTACGATTCTGAGCCTTTTGGGAAGGAACGAGATGCGGCCAT
CAAGAAGCTGGCCACTGAGGCTGGTGTGGAAGTCATCGTGCGCATTTCACACACACTGTATGAC
CTAGACAAGATCATAGAACTCAATGGTGGGCAGCCACCCCTAACATACAAAAGGTTTCAGACTC
TCGTCAGCAAAATGGAGCCCCTGGAGATGCCAGCAGACACCATCACATCAGACGTGATAGGGAA
GTGCACAACCCCTCTGTCCGACGACCATGATGAGAAGTACGGAGTTCCTTCCCTGGAGGAGCTC
GGTTTTGATACCGATGGCTTGTCCTCTGCGGTGTGGCCAGGAGGAGAAACTGAGGCACTTACAC
GTTTGGAAAGGCATTTGGAAAGAAAGGCCTGGGTGGCAAACTTTGAAAGACCTCGAATGAATGC
AAACTCCCTGCTCGCAAGCCCAACTGGACTGAGTCCTTATCTCCGCTTCGGTTGTTTGTCATGT
CGGCTATTTTATTTCAAACTAACAGATCTCTACAAAAAGGTAAAGAAAAATAGTTCCCCTCCCC
TTTCTCTTTATGGGCAACTCCTGTGGCGTGAATTTTTTTATACAGCAGCCACAAACAACCCACG
CTTTGACAAAATGGAAGGGAACCCCATCTGTGTTCAAATCCCTTGGGACAAGAATCCCGAGGCT
CTGGCCAAATGGGCAGAAGGCCGGACAGGCTTTCCGTGGATTGACGCCATCATGACACAGCTTC
GTCAGGAGGGCTGGATCCACCATCTAGCCCGACATGCAGTTGCCTGTTTCCTGACCCGCGGCGA
CCTATGGATCAGTTGGGAAGAAGGGATGAAGGTCTTTGAAGAATTACTGCTTGACGCCGACTGG
AGCATCAATGCTGGGAGTTGGATGTGGCTGTCCTGCAGTTCCTTTTTCCAACAGTTTTTCCACT
GCTACTGCCCTGTTGGTTTTGGTAGGAGGACAGACCCCAATGGAGACTATATTAGGCGTTATTT
GCCTGTCCTAAGAGGCTTCCCTGCAAAATATATCTACGATCCTTGGAATGCACCAGAAGGTATC
CAGAAGGTAGCCAAATGTTTGATAGGCGTTAATTATCCCAAACCAATGGTGAACCATGCCGAGG
CAAGTCGACTGAATATTGAAAGAATGAAGCAGATCTATCAGCAGCTCTCCCGCTACAGAGGGCT
AGGTCTCCTTGCCTCAGTCCCTTCTAATCCTAATGGGAACGGAGGGCTCATGGGCTATGCTCCT
GGAGAGAATGTCCCCAGCGGTGGCAGTGGTGGCGGAAACTGCTCTCAAGGAAGTGGTATTTTAC
ACTATGCTCACGGAGACAGTCAGCAAACTAACCCACTAAAGCAAGGAAGAAGCTCCATGGGCAC
TGGCCTCAGCAGCGGGAAGCGCCCAAGTCAGGAAGAGGACGCACAGAGTGTTGGCCCCAAAGTC
CAGCGACAGAGCAGTAACTGATACGGACACATTTTTCCAGACATCATTGTTTGACCTAATTTTG
CAGTCTTTGATAATACTGCTTTAGAAGCTCCGTGGAATCAGTGCGAACGCTCCTGTCTGCGTGG
ACAGTCTGTGTTACAGCCCGTGCAGCTGCTCTGACTCGCACTGTGCACTGTGCCCAGCCCCTTT
GTCTCCCTCCTTGTTCATTTCCAGCTACCGTGACTTTGTTATTAAAGTATATGCAAATATGGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_942045	(Get FASTA)	NCBI Sequence Viewer
	XP_008763447	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI07678	(Get FASTA)	NCBI Sequence Viewer
	AAQ11980	(Get FASTA)	NCBI Sequence Viewer
	EDM17107	(Get FASTA)	NCBI Sequence Viewer
	Q32Q86	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_942045 ⟸ NM_198750

- UniProtKB:

Q717B5 (UniProtKB/Swiss-Prot), Q32Q86 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDA
NLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRI
SHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVIGKCTTPLSDDHDEKYGV
PSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLR
FGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW
DKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL
LLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPW
NAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGLGLLASVPSNPNGNGG
LMGYAPGENVPSGGSGGGNCSQGSGILHYAHGDSQQTNPLKQGRSSMGTGLSSGKRPSQEEDAQ
SVGPKVQRQSSN

hide sequence

RefSeq Acc Id:	XP_008763447 ⟸ XM_008765225
- Peptide Label:	isoform X1
- UniProtKB:	Q717B5 (UniProtKB/Swiss-Prot), Q32Q86 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDA NLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRI SHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVIGKCTTPLSDDHDEKYGV PSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLR FGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW DKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL LLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPW NAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGLGLLASVPSNPNGNGG LMGYAPGENVPSGGSGGGNCSQGSGILHYAHGDSQQTNPLKQGRSSMGTGLSSGKRPSQEEDAQ SVGPKVQRQSSN hide sequence

RefSeq Acc Id:

ENSRNOP00000009124 ⟸ ENSRNOT00000009124

Protein Domains

Photolyase/cryptochrome alpha/beta

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q32Q86-F1-model_v2	AlphaFold	Q32Q86	1-588	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695096

Promoter ID:

EPDNEW_R5621

Type:

initiation region

Name:

Cry1_1

Description:

cryptochrome circadian regulator 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	24,534,569 - 24,534,629	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735083	AgrOrtholog
BioCyc Gene	G2FUF-34631	BioCyc
Ensembl Genes	ENSRNOG00000006622	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000009124	ENTREZGENE
	ENSRNOP00000009124.4	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000009124	ENTREZGENE
	ENSRNOT00000009124.6	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.40.80	UniProtKB/Swiss-Prot
	3.40.50.620	UniProtKB/Swiss-Prot
	DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7939194	IMAGE-MGC_LOAD
InterPro	Crypto/Photolyase_FAD-like_sf	UniProtKB/Swiss-Prot
	Crypto/Photolyase_N_sf	UniProtKB/Swiss-Prot
	Cryptochr/Photolyase_FAD-bd	UniProtKB/Swiss-Prot
	Cryptochrome/DNA_photolyase_1	UniProtKB/Swiss-Prot
	DNA_photolyase_N	UniProtKB/Swiss-Prot
	Rossmann-like_a/b/a_fold	UniProtKB/Swiss-Prot
KEGG Report	rno:299691	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124541	IMAGE-MGC_LOAD
NCBI Gene	299691	ENTREZGENE
PANTHER	CRYPTOCHROME-1	UniProtKB/Swiss-Prot
	PTHR11455	UniProtKB/Swiss-Prot
Pfam	DNA_photolyase	UniProtKB/Swiss-Prot
	FAD_binding_7	UniProtKB/Swiss-Prot
PhenoGen	Cry1	PhenoGen
PROSITE	PHR_CRY_ALPHA_BETA	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48173	UniProtKB/Swiss-Prot
	SSF52425	UniProtKB/Swiss-Prot
UniProt	CRY1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q717B5	ENTREZGENE
UniProt Secondary	Q717B5	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-10-09	Cry1	cryptochrome circadian regulator 1	Cry1	cryptochrome circadian clock 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-01-23	Cry1	cryptochrome circadian clock 1	Cry1	cryptochrome 1 (photolyase-like)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Cry1	cryptochrome 1 (photolyase-like)			Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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