D7Rat223 Marker Search Result - Rat Genome Database

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Marker: D7Rat223

Symbol: D7Rat223
Previously known as: oxsts11434; R0315-C09; 
RGD ID: 42335
Expected Size: 233 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8725,711,732 - 25,711,965 (+)Marker Load Pipeline
mRatBN7.2723,824,381 - 23,824,614 (+)MAPPERmRatBN7.2
Rnor_6.0729,980,957 - 29,981,189NCBIRnor6.0
Rnor_5.0730,082,488 - 30,082,720UniSTSRnor5.0
RGSC_v3.4726,168,017 - 26,168,250RGDRGSC3.4
RGSC_v3.4726,168,018 - 26,168,250UniSTSRGSC3.4
RGSC_v3.1726,188,288 - 26,188,521RGD
Celera720,971,244 - 20,971,476UniSTS
FHH x ACI Map76.72UniSTS
FHH x ACI Map76.72RGD
Cytogenetic Map7q13UniSTS
Is Marker For: Genes:   Gas2l3  




#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer CTCCTTGGCCACCTGTACTT
Reverse Primer ACATGTTGGCAGCACCTAGC
 
Template 
CTCCCCCTACCCATAATTCCAACTCTAAAGGATCTGACACACTCCCCTGGCCTCCTTGGCCACC
TGTACTTATATGCCCAACACACCCAGACACACACACACACACACACACACACACACACACACAC
ACACACTTAAAAATAATAAAATAAATATTTAAAGCATCTCAGTTATGATTTGAAGTTTGCAACA
GCCATTTACCACATGTCATTCACTTCCTCCATTTCAGACAGACATCTGCTTAACCTCTGCTGTA
CTGTACCGGGACCAGGGCTAGGTGCTGCCAACATGTATACTTGTAGGGCAGGGGTCATTAACCC
ATTTTAGAGGGTACCGAGACTCGAATTCGTAATACATGGTCATAGCTGTTTCCTGTGTGAAATT
GTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGC
CTAATGAGTGAGCTAACTCACATTAATTGCGTTGGCTCACTGCCCGCTTTCCAGTCGGGAAACC
TGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGGTATTGGGCGC
AGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGTGATTGCCCTTNCAACNCCCNGNCCN
CNTNNGGGGGGNCCCCCCCTNGGGNANGGAAAGGNAANGGTTTTNGGGCCCAANGGNNCCAAAA
ANGGNCCGGGGGGNTTNCCNCNANNNGNNNTTNGGGGGGGTTNTTTTNGGNCCCCCCCCAANGG
CNNAGGGGGNNGGGGANNAAAAAANTTNNNNTNGGNTTTTNTNNGNNNNNGGNGGNT


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1594151Gas2l3growth arrest-specific 2 like 372380357823836816Rat
GenBank Nucleotide JH615934.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat

1 to 10 of 30 rows


Database
Acc Id
Source(s)
NCBI Gene 680280 UniSTS