Trnaw-cca1 (transfer RNA tryptophan (anticodon CCA) 1) - Rat Genome Database

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Gene: Trnaw-cca1 (transfer RNA tryptophan (anticodon CCA) 1) Rattus norvegicus
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Symbol: Trnaw-cca1
Name: transfer RNA tryptophan (anticodon CCA) 1
RGD ID: 11464810
Description: This record represents a tRNA model predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).
Type: trna
RefSeq Status: MODEL
Previously known as: transfer RNA tryptophan (anticodon CCA); Trnaw-cca
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8727,565,564 - 27,565,635 (-)NCBIGRCr8
mRatBN7.2725,678,341 - 25,678,412 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0731,883,000 - 31,883,071 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera722,804,723 - 22,804,794 (-)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Trnaw-cca1
1 total Variants

1 to 10 of 32 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat

1 to 10 of 32 rows





GenBank Nucleotide AC095650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-34460 BioCyc
NCBI Gene Trnaw-cca ENTREZGENE
PhenoGen Trnaw-cca1 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 Trnaw-cca1  transfer RNA tryptophan (anticodon CCA) 1      Symbol and Name status set to provisional 70820 PROVISIONAL