Nfyb (nuclear transcription factor Y subunit beta) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Nfyb (nuclear transcription factor Y subunit beta) Rattus norvegicus
Analyze
Symbol: Nfyb
Name: nuclear transcription factor Y subunit beta
RGD ID: 3172
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; DNA-binding transcription factor binding activity; and sequence-specific DNA binding activity. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cellular response to leukemia inhibitory factor and positive regulation of DNA-templated transcription. Part of CCAAT-binding activity factor complex. Orthologous to human NFYB (nuclear transcription factor Y subunit beta); PARTICIPATES IN altered p53 signaling pathway; antigen processing and presentation pathway; tuberculosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CAAT box DNA-binding protein subunit B; CAAT-box DNA-binding protein subunit B; CBF-A; CBF-B; CBFB; CCAAT binding transcription factor of CBF-B/NFY-B; CCAAT-binding transcription factor subunit A; CCAAT-binding transcription factor subunit B; MGC108654; NF-YB; Nfya; nuclear transcription factor - Y beta; nuclear transcription factor Y subunit B; nuclear transcription factor-Y beta
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,852,543 - 22,868,116 (+)NCBIGRCr8
mRatBN7.2720,964,988 - 20,980,569 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,964,993 - 20,980,565 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx722,939,228 - 22,954,797 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0725,101,932 - 25,117,500 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,879,005 - 24,894,574 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0727,081,667 - 27,097,481 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl727,081,667 - 27,097,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0727,200,204 - 27,216,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4723,190,295 - 23,205,611 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1723,210,565 - 23,225,880 (+)NCBI
Celera718,145,883 - 18,161,286 (+)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-naphthylamine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
ethanol  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
geraniol  (ISO)
indometacin  (ISO)
inulin  (ISO)
L-methionine  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxyacetic acid  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
Monobutylphthalate  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
nicotine  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
Soman  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
tert-butyl hydroperoxide  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trabectedin  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
valproic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mutant p53: one name, many proteins. Freed-Pastor WA and Prives C, Genes Dev. 2012 Jun 15;26(12):1268-86. doi: 10.1101/gad.190678.112.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. p53 mutations in cancer. Muller PA and Vousden KH, Nat Cell Biol. 2013 Jan;15(1):2-8. doi: 10.1038/ncb2641.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Recombinant rat CBF-C, the third subunit of CBF/NFY, allows formation of a protein-DNA complex with CBF-A and CBF-B and with yeast HAP2 and HAP3. Sinha S, etal., Proc Natl Acad Sci U S A 1995 Feb 28;92(5):1624-8.
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
11. Purification and molecular cloning of the "A" chain of a rat heteromeric CCAAT-binding protein. Sequence identity with the yeast HAP3 transcription factor. Vuorio T, etal., J Biol Chem 1990 Dec 25;265(36):22480-6.
Additional References at PubMed
PMID:1698608   PMID:11256944   PMID:12477932   PMID:15220343   PMID:15243141   PMID:15516209   PMID:15601870   PMID:15721292   PMID:15964792   PMID:18247329   PMID:19223331   PMID:19734906  
PMID:20439489  


Genomics

Comparative Map Data
Nfyb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,852,543 - 22,868,116 (+)NCBIGRCr8
mRatBN7.2720,964,988 - 20,980,569 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,964,993 - 20,980,565 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx722,939,228 - 22,954,797 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0725,101,932 - 25,117,500 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,879,005 - 24,894,574 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0727,081,667 - 27,097,481 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl727,081,667 - 27,097,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0727,200,204 - 27,216,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4723,190,295 - 23,205,611 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1723,210,565 - 23,225,880 (+)NCBI
Celera718,145,883 - 18,161,286 (+)NCBICelera
Cytogenetic Map7q13NCBI
NFYB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812104,117,086 - 104,138,210 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12104,117,086 - 104,138,241 (-)EnsemblGRCh38hg38GRCh38
GRCh3712104,510,864 - 104,531,988 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,034,988 - 103,056,170 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412103,013,324 - 103,034,507NCBI
Celera12104,174,600 - 104,195,782 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12101,570,544 - 101,591,726 (-)NCBIHuRef
CHM1_112104,476,772 - 104,497,954 (-)NCBICHM1_1
T2T-CHM13v2.012104,078,781 - 104,099,908 (-)NCBIT2T-CHM13v2.0
Nfyb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,584,534 - 82,599,985 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1082,584,535 - 82,599,978 (-)EnsemblGRCm39 Ensembl
GRCm381082,748,700 - 82,764,151 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,748,701 - 82,764,144 (-)EnsemblGRCm38mm10GRCm38
MGSCv371082,211,445 - 82,226,886 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361082,178,499 - 82,193,940 (-)NCBIMGSCv36mm8
Celera1084,733,247 - 84,748,605 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1040.25NCBI
Nfyb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,771,837 - 38,789,536 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,773,690 - 38,789,534 (-)NCBIChiLan1.0ChiLan1.0
NFYB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210112,179,923 - 112,200,452 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112112,176,320 - 112,196,849 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012101,693,559 - 101,714,057 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112105,089,028 - 105,108,825 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12105,089,028 - 105,108,825 (-)Ensemblpanpan1.1panPan2
NFYB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11542,608,067 - 42,628,816 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1542,609,606 - 42,629,158 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1542,977,178 - 42,998,767 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01543,265,789 - 43,287,387 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1543,264,430 - 43,286,300 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11542,531,537 - 42,553,082 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01542,630,397 - 42,651,973 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01542,901,800 - 42,923,377 (-)NCBIUU_Cfam_GSD_1.0
Nfyb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494517,348,997 - 17,368,049 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649210,359,387 - 10,377,537 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFYB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl580,334,748 - 80,353,768 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1580,333,762 - 80,353,466 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2583,903,195 - 83,922,952 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap5q2.3NCBI
NFYB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,320,263 - 99,341,289 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1199,319,390 - 99,329,726 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037145,655,097 - 145,678,182 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nfyb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247504,600,345 - 4,614,817 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247504,600,423 - 4,616,241 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nfyb
63 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:230
Count of miRNA genes:149
Interacting mature miRNAs:185
Transcripts:ENSRNOT00000066143
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 57 41 19 41 8 11 74 23 35 11 8
Low 17 12 6
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000066143   ⟹   ENSRNOP00000061405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl720,964,993 - 20,980,565 (+)Ensembl
Rnor_6.0 Ensembl727,081,667 - 27,097,479 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082398   ⟹   ENSRNOP00000071810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl720,972,271 - 20,979,287 (+)Ensembl
Rnor_6.0 Ensembl727,089,278 - 27,095,777 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102116   ⟹   ENSRNOP00000095617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl720,972,366 - 20,979,287 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117282   ⟹   ENSRNOP00000091093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl720,972,160 - 20,980,565 (+)Ensembl
RefSeq Acc Id: NM_031553   ⟹   NP_113741
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,852,546 - 22,868,116 (+)NCBI
mRatBN7.2720,964,999 - 20,980,569 (+)NCBI
Rnor_6.0727,081,667 - 27,097,481 (+)NCBI
Rnor_5.0727,200,204 - 27,216,018 (+)NCBI
RGSC_v3.4723,190,295 - 23,205,611 (+)RGD
Celera718,145,883 - 18,161,286 (+)RGD
Sequence:
RefSeq Acc Id: XM_039078461   ⟹   XP_038934389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,852,728 - 22,868,116 (+)NCBI
mRatBN7.2720,965,529 - 20,980,569 (+)NCBI
RefSeq Acc Id: XM_039078462   ⟹   XP_038934390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,852,543 - 22,868,116 (+)NCBI
mRatBN7.2720,964,988 - 20,980,569 (+)NCBI
RefSeq Acc Id: NP_113741   ⟸   NM_031553
- UniProtKB: Q5FVT0 (UniProtKB/Swiss-Prot),   P63140 (UniProtKB/Swiss-Prot),   A6IFH9 (UniProtKB/TrEMBL),   A0A0G2K1E6 (UniProtKB/TrEMBL),   A0A8I6B326 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071810   ⟸   ENSRNOT00000082398
RefSeq Acc Id: ENSRNOP00000061405   ⟸   ENSRNOT00000066143
RefSeq Acc Id: XP_038934390   ⟸   XM_039078462
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038934389   ⟸   XM_039078461
- Peptide Label: isoform X1
- UniProtKB: P63140 (UniProtKB/Swiss-Prot),   Q5FVT0 (UniProtKB/Swiss-Prot),   A6IFH9 (UniProtKB/TrEMBL),   A0A0G2K1E6 (UniProtKB/TrEMBL),   A0A8I6B326 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000095617   ⟸   ENSRNOT00000102116
RefSeq Acc Id: ENSRNOP00000091093   ⟸   ENSRNOT00000117282
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P63140-F1-model_v2 AlphaFold P63140 1-207 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695111
Promoter ID:EPDNEW_R5636
Type:initiation region
Name:Nfyb_1
Description:nuclear transcription factor Y subunit beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0727,081,737 - 27,081,797EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3172 AgrOrtholog
BioCyc Gene G2FUF-34550 BioCyc
Ensembl Genes ENSRNOG00000010309 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055021449 UniProtKB/Swiss-Prot
  ENSRNOG00060028269 UniProtKB/Swiss-Prot
  ENSRNOG00065021941 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000066143 ENTREZGENE
  ENSRNOT00000066143.3 UniProtKB/Swiss-Prot
  ENSRNOT00000082398.2 UniProtKB/TrEMBL
  ENSRNOT00000102116.1 UniProtKB/TrEMBL
  ENSRNOT00000117282.1 UniProtKB/TrEMBL
  ENSRNOT00055036684 UniProtKB/Swiss-Prot
  ENSRNOT00060049219 UniProtKB/Swiss-Prot
  ENSRNOT00065037414 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7380395 IMAGE-MGC_LOAD
InterPro CBFA_NFYB_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transc_fact_NFYB/HAP3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transcrpt_fac_NFYB/HAP3_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25336 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108654 IMAGE-MGC_LOAD
NCBI Gene 25336 ENTREZGENE
PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11064 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CBFD_NFYB_HMF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nfyb PhenoGen
PRINTS CCAATSUBUNTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NFYB_HAP3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010309 RatGTEx
  ENSRNOG00055021449 RatGTEx
  ENSRNOG00060028269 RatGTEx
  ENSRNOG00065021941 RatGTEx
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC209912
  TC223146
UniProt A0A0G2K1E6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AC92_RAT UniProtKB/TrEMBL
  A0A8I6B326 ENTREZGENE, UniProtKB/TrEMBL
  A6IFH9 ENTREZGENE, UniProtKB/TrEMBL
  A6IFI1_RAT UniProtKB/TrEMBL
  NFYB_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5FVT0 ENTREZGENE
UniProt Secondary P22569 UniProtKB/Swiss-Prot
  Q5FVT0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-20 Nfyb  nuclear transcription factor Y subunit beta  Nfyb  nuclear transcription factor-Y beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2001-07-23 Nfyb  CCAAT binding transcription factor of CBF-B/NFY-B      Name withdrawn 67952 WITHDRAWN
2001-07-23 Nfyb  nuclear transcription factor - Y beta      Name updated to reflect Human and Mouse nomenclature 67952 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 207 amino acids 728940