C7h12orf42 (similar to human chromosome 12 open reading frame 42) - Rat Genome Database

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Gene: C7h12orf42 (similar to human chromosome 12 open reading frame 42) Rattus norvegicus
Analyze
Symbol: C7h12orf42 (Ensembl: RGD1560034)
Name: similar to human chromosome 12 open reading frame 42 (Ensembl:similar to FLJ25323 protein)
RGD ID: 1560034
Description: Orthologous to human C12orf42 (chromosome 12 open reading frame 42); INTERACTS WITH 1-naphthyl isothiocyanate; bisphenol A; glyphosate.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC679534; LOC500819; LOC679534; RGD1560034; similar to FLJ25323 protein; uncharacterized protein C12orf42 homolog
RGD Orthologs
Human
Mouse
Bonobo
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8723,351,247 - 23,540,772 (+)NCBIGRCr8
mRatBN7.2721,455,182 - 21,653,232 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl721,463,790 - 21,653,244 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0727,598,357 - 27,788,846 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl727,620,458 - 27,786,999 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0727,711,457 - 27,903,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4723,728,241 - 23,856,221 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera718,643,135 - 18,832,464 (+)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
C7h12orf42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8723,351,247 - 23,540,772 (+)NCBIGRCr8
mRatBN7.2721,455,182 - 21,653,232 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl721,463,790 - 21,653,244 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0727,598,357 - 27,788,846 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl727,620,458 - 27,786,999 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0727,711,457 - 27,903,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4723,728,241 - 23,856,221 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera718,643,135 - 18,832,464 (+)NCBICelera
Cytogenetic Map7q13NCBI
C12orf42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812103,047,624 - 103,563,790 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12103,237,591 - 103,495,978 (-)EnsemblGRCh38hg38GRCh38
GRCh3712103,473,418 - 103,895,283 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612102,219,863 - 102,413,879 (-)NCBINCBI36Build 36hg18NCBI36
Celera12103,359,877 - 103,553,591 (-)NCBICelera
Cytogenetic Map12q23.2-q23.3NCBI
HuRef12100,690,377 - 100,949,321 (-)NCBIHuRef
CHM1_112103,598,060 - 103,856,468 (-)NCBICHM1_1
T2T-CHM13v2.012103,008,475 - 103,525,054 (-)NCBIT2T-CHM13v2.0
1700113H08Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391086,893,910 - 87,066,461 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1086,893,909 - 87,066,451 (+)EnsemblGRCm39 Ensembl
GRCm381087,058,046 - 87,230,599 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1087,058,045 - 87,230,589 (+)EnsemblGRCm38mm10GRCm38
MGSCv371086,520,791 - 86,693,344 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361086,655,699 - 86,660,398 (+)NCBIMGSCv36mm8
Celera1089,034,680 - 89,205,896 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.5NCBI
C10H12orf42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210111,109,401 - 111,567,331 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112111,105,798 - 111,563,728 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012100,878,402 - 101,074,878 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112104,212,452 - 104,470,157 (-)NCBIpanpan1.1PanPan1.1panPan2
CUNH12orf42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494517,895,300 - 18,050,335 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649210,923,778 - 11,060,697 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH12orf42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11198,499,902 - 98,678,882 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037146,297,215 - 146,491,742 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in C7h12orf42
951 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:37
Interacting mature miRNAs:42
Transcripts:ENSRNOT00000059532
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat

Markers in Region
D7Got245  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2721,547,093 - 21,547,262 (+)MAPPERmRatBN7.2
Rnor_6.0727,680,917 - 27,681,085NCBIRnor6.0
Rnor_5.0727,795,079 - 27,795,247UniSTSRnor5.0
RGSC_v3.4723,749,214 - 23,749,382UniSTSRGSC3.4
Celera718,724,358 - 18,724,526UniSTS
Cytogenetic Map7q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 1 1 66 10 1
Below cutoff 1 7 30 24 8 24 4 4 6 12 21 10 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006225990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000059532   ⟹   ENSRNOP00000056288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl721,463,790 - 21,653,244 (+)Ensembl
Rnor_6.0 Ensembl727,620,458 - 27,786,999 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108898   ⟹   ENSRNOP00000097237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl721,623,650 - 21,653,244 (+)Ensembl
RefSeq Acc Id: XM_006241212   ⟹   XP_006241274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,380,215 - 23,540,772 (+)NCBI
mRatBN7.2721,492,575 - 21,653,232 (+)NCBI
Rnor_6.0727,627,360 - 27,788,846 (+)NCBI
Rnor_5.0727,711,457 - 27,903,220 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241213   ⟹   XP_006241275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,376,704 - 23,540,772 (+)NCBI
mRatBN7.2721,489,154 - 21,653,232 (+)NCBI
Rnor_6.0727,624,822 - 27,788,846 (+)NCBI
Rnor_5.0727,711,457 - 27,903,220 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241216   ⟹   XP_006241278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,380,215 - 23,540,772 (+)NCBI
mRatBN7.2721,492,575 - 21,653,232 (+)NCBI
Rnor_6.0727,627,360 - 27,788,846 (+)NCBI
Rnor_5.0727,711,457 - 27,903,220 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595192   ⟹   XP_017450681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,351,247 - 23,540,772 (+)NCBI
mRatBN7.2721,463,738 - 21,653,232 (+)NCBI
Rnor_6.0727,598,357 - 27,788,846 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595193   ⟹   XP_017450682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,351,247 - 23,540,772 (+)NCBI
mRatBN7.2721,463,737 - 21,653,232 (+)NCBI
Rnor_6.0727,598,357 - 27,788,846 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595194   ⟹   XP_017450683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,351,281 - 23,540,772 (+)NCBI
mRatBN7.2721,463,772 - 21,653,232 (+)NCBI
Rnor_6.0727,598,357 - 27,788,846 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595195   ⟹   XP_017450684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,351,247 - 23,540,772 (+)NCBI
mRatBN7.2721,463,737 - 21,653,232 (+)NCBI
Rnor_6.0727,598,357 - 27,788,846 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595196   ⟹   XP_017450685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,379,279 - 23,540,772 (+)NCBI
mRatBN7.2721,491,877 - 21,653,232 (+)NCBI
Rnor_6.0727,626,939 - 27,788,846 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039080504   ⟹   XP_038936432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,351,247 - 23,540,772 (+)NCBI
mRatBN7.2721,463,737 - 21,653,232 (+)NCBI
RefSeq Acc Id: XM_039080505   ⟹   XP_038936433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,376,703 - 23,540,772 (+)NCBI
mRatBN7.2721,489,153 - 21,653,232 (+)NCBI
RefSeq Acc Id: XM_039080507   ⟹   XP_038936435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,379,277 - 23,540,772 (+)NCBI
mRatBN7.2721,491,876 - 21,653,232 (+)NCBI
RefSeq Acc Id: XM_063264591   ⟹   XP_063120661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,380,211 - 23,540,772 (+)NCBI
RefSeq Acc Id: XM_063264592   ⟹   XP_063120662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,380,212 - 23,540,772 (+)NCBI
RefSeq Acc Id: XR_005487476
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,351,248 - 23,535,777 (+)NCBI
mRatBN7.2721,463,738 - 21,648,154 (+)NCBI
RefSeq Acc Id: XR_005487477
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,351,248 - 23,428,556 (+)NCBI
mRatBN7.2721,463,739 - 21,542,455 (+)NCBI
RefSeq Acc Id: XR_005487478
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,351,248 - 23,400,748 (+)NCBI
mRatBN7.2721,463,739 - 21,512,989 (+)NCBI
RefSeq Acc Id: XR_010053654
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8723,351,248 - 23,428,556 (+)NCBI
RefSeq Acc Id: XP_006241275   ⟸   XM_006241213
- Peptide Label: isoform X1
- UniProtKB: F1M0M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241274   ⟸   XM_006241212
- Peptide Label: isoform X1
- UniProtKB: F1M0M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241278   ⟸   XM_006241216
- Peptide Label: isoform X1
- UniProtKB: F1M0M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450682   ⟸   XM_017595193
- Peptide Label: isoform X1
- UniProtKB: F1M0M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450681   ⟸   XM_017595192
- Peptide Label: isoform X1
- UniProtKB: F1M0M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450684   ⟸   XM_017595195
- Peptide Label: isoform X1
- UniProtKB: F1M0M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450683   ⟸   XM_017595194
- Peptide Label: isoform X1
- UniProtKB: F1M0M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450685   ⟸   XM_017595196
- Peptide Label: isoform X1
- UniProtKB: F1M0M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000056288   ⟸   ENSRNOT00000059532
RefSeq Acc Id: XP_038936432   ⟸   XM_039080504
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ARC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936433   ⟸   XM_039080505
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ARC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936435   ⟸   XM_039080507
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ARC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000097237   ⟸   ENSRNOT00000108898
RefSeq Acc Id: XP_063120661   ⟸   XM_063264591
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063120662   ⟸   XM_063264592
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M0M5-F1-model_v2 AlphaFold F1M0M5 1-354 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560034 AgrOrtholog
BioCyc Gene G2FUF-34537 BioCyc
Ensembl Genes ENSRNOG00000038943 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059532.4 UniProtKB/TrEMBL
  ENSRNOT00000108898.1 UniProtKB/TrEMBL
InterPro DUF4607 UniProtKB/TrEMBL
KEGG Report rno:679534 UniProtKB/TrEMBL
NCBI Gene C7h12orf42 ENTREZGENE
PANTHER PTHR40708 UniProtKB/TrEMBL
  RIKEN CDNA 1700113H08 GENE UniProtKB/TrEMBL
Pfam DUF4607 UniProtKB/TrEMBL
PhenoGen C7h12orf42 PhenoGen
RatGTEx ENSRNOG00000038943 RatGTEx
UniProt A0A8I6ARC7 ENTREZGENE, UniProtKB/TrEMBL
  F1M0M5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C7h12orf42  similar to human chromosome 12 open reading frame 42  RGD1560034  similar to FLJ25323 protein  Symbol and Name Changed 1299863 APPROVED
2011-10-28 RGD1560034  similar to FLJ25323 protein  LOC679534  hypothetical protein LOC679534  Data merged from RGD:1587149 737654 APPROVED
2008-04-30 RGD1560034  similar to FLJ25323 protein   RGD1560034_predicted  similar to FLJ25323 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC679534  hypothetical protein LOC679534      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1560034_predicted  similar to FLJ25323 protein (predicted)  LOC500819  similar to FLJ25323 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500819  similar to FLJ25323 protein      Symbol and Name status set to provisional 70820 PROVISIONAL