Pop1 (POP1 homolog, ribonuclease P/MRP subunit) - Rat Genome Database

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Gene: Pop1 (POP1 homolog, ribonuclease P/MRP subunit) Rattus norvegicus
Analyze
Symbol: Pop1
Name: POP1 homolog, ribonuclease P/MRP subunit
RGD ID: 1308609
Description: Predicted to enable ribonuclease P RNA binding activity. Predicted to contribute to ribonuclease P activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic; tRNA 5'-leader removal; and tRNA catabolic process. Predicted to be located in nucleolus. Predicted to be part of nucleolar ribonuclease P complex and ribonuclease MRP complex. Human ortholog(s) of this gene implicated in anauxetic dysplasia 2. Orthologous to human POP1 (POP1 homolog, ribonuclease P/MRP subunit); PARTICIPATES IN tRNA maturation pathway; ribosome biogenesis pathway; RNA transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC315045; processing of precursor 1; processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) ; processing of precursor 1, ribonuclease P/MRP subunit; processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae); ribonucleases P/MRP protein subunit POP1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2765,705,348 - 65,733,143 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl765,705,368 - 65,733,141 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx767,594,571 - 67,622,250 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0769,796,304 - 69,823,946 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0769,661,718 - 69,689,297 (+)NCBIRnor_WKY
Rnor_6.0773,270,403 - 73,298,209 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl773,270,455 - 73,298,239 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0773,436,473 - 73,473,185 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4769,944,414 - 69,979,794 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1769,965,163 - 70,000,525 (+)NCBI
Celera762,806,384 - 62,834,025 (+)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Unexpected diversity of RNase P, an ancient tRNA processing enzyme: challenges and prospects. Lai LB, etal., FEBS Lett. 2010 Jan 21;584(2):287-96. doi: 10.1016/j.febslet.2009.11.048. Epub .
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8918471   PMID:16723659   PMID:22658674   PMID:22664934   PMID:30454648  


Genomics

Comparative Map Data
Pop1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2765,705,348 - 65,733,143 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl765,705,368 - 65,733,141 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx767,594,571 - 67,622,250 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0769,796,304 - 69,823,946 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0769,661,718 - 69,689,297 (+)NCBIRnor_WKY
Rnor_6.0773,270,403 - 73,298,209 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl773,270,455 - 73,298,239 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0773,436,473 - 73,473,185 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4769,944,414 - 69,979,794 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1769,965,163 - 70,000,525 (+)NCBI
Celera762,806,384 - 62,834,025 (+)NCBICelera
Cytogenetic Map7q22NCBI
POP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38898,117,293 - 98,159,835 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl898,117,293 - 98,159,835 (+)EnsemblGRCh38hg38GRCh38
GRCh37899,129,521 - 99,172,063 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36899,199,244 - 99,239,816 (+)NCBINCBI36Build 36hg18NCBI36
Build 34899,199,243 - 99,239,814NCBI
Celera895,315,383 - 95,357,929 (+)NCBICelera
Cytogenetic Map8q22.2NCBI
HuRef894,333,090 - 94,375,569 (+)NCBIHuRef
CHM1_1899,170,273 - 99,212,813 (+)NCBICHM1_1
T2T-CHM13v2.0899,242,783 - 99,285,304 (+)NCBIT2T-CHM13v2.0
Pop1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391534,495,457 - 34,530,799 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1534,495,450 - 34,530,794 (+)EnsemblGRCm39 Ensembl
GRCm381534,495,311 - 34,530,653 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1534,495,304 - 34,530,648 (+)EnsemblGRCm38mm10GRCm38
MGSCv371534,425,066 - 34,460,408 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361534,439,912 - 34,475,237 (+)NCBIMGSCv36mm8
Celera1535,123,159 - 35,157,920 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
Pop1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541713,823,057 - 13,856,448 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541713,823,027 - 13,856,448 (+)NCBIChiLan1.0ChiLan1.0
POP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1896,938,574 - 96,980,896 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl896,944,588 - 96,979,328 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0894,754,028 - 94,796,374 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
POP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.113361,095 - 398,214 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl13361,157 - 396,628 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha13354,500 - 400,369 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.013509,663 - 555,581 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl13509,734 - 546,040 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.113353,061 - 398,925 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.013461,025 - 506,891 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.013467,078 - 512,927 (+)NCBIUU_Cfam_GSD_1.0
Pop1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530337,250,693 - 37,284,328 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647044,676,776 - 44,710,716 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647044,676,798 - 44,710,397 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl438,607,708 - 38,656,151 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1438,608,536 - 38,656,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2441,668,276 - 41,807,928 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1893,031,600 - 93,074,700 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl893,043,277 - 93,074,818 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603947,664,062 - 47,707,173 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pop1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247635,269,847 - 5,300,723 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247635,264,003 - 5,299,000 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pop1
126 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:14
Count of miRNA genes:14
Interacting mature miRNAs:14
Transcripts:ENSRNOT00000007190
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat

Markers in Region
D7Rat165  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2765,728,634 - 65,728,867 (+)MAPPERmRatBN7.2
Rnor_6.0773,293,702 - 73,293,934NCBIRnor6.0
Rnor_5.0773,468,678 - 73,468,910UniSTSRnor5.0
RGSC_v3.4769,975,398 - 69,975,631RGDRGSC3.4
RGSC_v3.4769,975,399 - 69,975,631UniSTSRGSC3.4
RGSC_v3.1769,995,901 - 69,996,450RGD
Celera762,829,630 - 62,829,862UniSTS
FHH x ACI Map734.52RGD
FHH x ACI Map734.52UniSTS
Cytogenetic Map7q22UniSTS
BE105841  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2765,732,794 - 65,732,978 (+)MAPPERmRatBN7.2
Rnor_6.0773,297,861 - 73,298,044NCBIRnor6.0
Rnor_5.0773,472,837 - 73,473,020UniSTSRnor5.0
RGSC_v3.4769,979,558 - 69,979,741UniSTSRGSC3.4
Celera762,833,789 - 62,833,972UniSTS
Cytogenetic Map7q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 6 6 6 16 15 22
Low 3 41 51 35 19 35 8 11 58 20 19 11 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000007190   ⟹   ENSRNOP00000007190
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl765,705,387 - 65,733,031 (+)Ensembl
Rnor_6.0 Ensembl773,270,455 - 73,298,097 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077730   ⟹   ENSRNOP00000073143
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl765,705,368 - 65,733,141 (+)Ensembl
Rnor_6.0 Ensembl773,273,985 - 73,298,239 (+)Ensembl
RefSeq Acc Id: NM_001130550   ⟹   NP_001124022
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2765,705,387 - 65,733,031 (+)NCBI
Rnor_6.0773,270,455 - 73,298,097 (+)NCBI
Rnor_5.0773,436,473 - 73,473,185 (+)NCBI
RGSC_v3.4769,944,414 - 69,979,794 (+)RGD
Celera762,806,384 - 62,834,025 (+)RGD
Sequence:
RefSeq Acc Id: XM_006241543   ⟹   XP_006241605
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2765,705,348 - 65,733,143 (+)NCBI
Rnor_6.0773,270,403 - 73,298,209 (+)NCBI
Rnor_5.0773,436,473 - 73,473,185 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039079226   ⟹   XP_038935154
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2765,718,020 - 65,733,143 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001124022 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241605 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935154 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16417 (Get FASTA)   NCBI Sequence Viewer  
  EDM16418 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001124022   ⟸   NM_001130550
- UniProtKB: D4AE75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241605   ⟸   XM_006241543
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4R5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073143   ⟸   ENSRNOT00000077730
RefSeq Acc Id: ENSRNOP00000007190   ⟸   ENSRNOT00000007190
RefSeq Acc Id: XP_038935154   ⟸   XM_039079226
- Peptide Label: isoform X2
Protein Domains
POP1   POPLD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AE75-F1-model_v2 AlphaFold D4AE75 1-1044 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695283
Promoter ID:EPDNEW_R5808
Type:multiple initiation site
Name:Pop1_1
Description:POP1 homolog, ribonuclease P/MRP subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5809  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0773,270,449 - 73,270,509EPDNEW
RGD ID:13695295
Promoter ID:EPDNEW_R5809
Type:single initiation site
Name:Pop1_2
Description:POP1 homolog, ribonuclease P/MRP subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5808  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0773,274,034 - 73,274,094EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308609 AgrOrtholog
BioCyc Gene G2FUF-33679 BioCyc
Ensembl Genes ENSRNOG00000005243 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000007190 ENTREZGENE
  ENSRNOP00000007190.5 UniProtKB/TrEMBL
  ENSRNOP00000073143 ENTREZGENE
  ENSRNOP00000073143.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007190 ENTREZGENE
  ENSRNOT00000007190.7 UniProtKB/TrEMBL
  ENSRNOT00000077730 ENTREZGENE
  ENSRNOT00000077730.2 UniProtKB/TrEMBL
InterPro Pop1 UniProtKB/TrEMBL
  POPLD UniProtKB/TrEMBL
  RNase_P/MRP_POP1 UniProtKB/TrEMBL
KEGG Report rno:315045 UniProtKB/TrEMBL
NCBI Gene 315045 ENTREZGENE
PANTHER PTHR22731 UniProtKB/TrEMBL
Pfam POP1 UniProtKB/TrEMBL
  POPLD UniProtKB/TrEMBL
PhenoGen Pop1 PhenoGen
UniProt A0A0G2K4R5 ENTREZGENE, UniProtKB/TrEMBL
  D4AE75 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-20 Pop1  POP1 homolog, ribonuclease P/MRP subunit  Pop1  processing of precursor 1, ribonuclease P/MRP subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-17 Pop1  processing of precursor 1, ribonuclease P/MRP subunit  Pop1  processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Pop1  processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)  Pop1  processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Pop1  processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)   Pop1_predicted  processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pop1_predicted  processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED