Vps13b (vacuolar protein sorting 13 homolog B) - Rat Genome Database

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Gene: Vps13b (vacuolar protein sorting 13 homolog B) Rattus norvegicus
Analyze
Symbol: Vps13b
Name: vacuolar protein sorting 13 homolog B
RGD ID: 1311183
Description: Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including acrosome assembly; maintenance of lens transparency; and slow endocytic recycling. Predicted to act upstream of or within several processes, including dentate gyrus development; head morphogenesis; and social behavior. Predicted to be located in Golgi apparatus and bounding membrane of organelle. Human ortholog(s) of this gene implicated in Cohen syndrome. Orthologous to human VPS13B (vacuolar protein sorting 13 homolog B); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Coh1; Cohen syndrome homolog 1; Cohh1; intermembrane lipid transfer protein VPS13B; LOC102555534; LOC315036; vacuolar protein sorting 13 homolog B (yeast); vacuolar protein sorting-associated protein 13B; vacuolar protein sorting-associated protein 13B-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8768,436,996 - 69,013,574 (+)NCBIGRCr8
mRatBN7.2766,557,862 - 67,128,429 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl766,558,471 - 67,128,429 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx768,447,001 - 69,016,940 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0770,649,629 - 71,219,546 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0770,517,478 - 71,087,415 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0774,118,834 - 74,722,341 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl775,852,610 - 75,858,812 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0774,281,753 - 74,879,196 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4770,839,616 - 71,464,951 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1770,860,765 - 71,486,400 (+)NCBI
Celera763,647,181 - 64,211,271 (+)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
7,12-dimethyltetraphene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
caffeine  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cobalt dichloride  (EXP)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
Heliotrine  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
indometacin  (ISO)
irinotecan  (EXP)
maneb  (ISO)
methapyrilene  (EXP,ISO)
methotrexate  (ISO)
O-methyleugenol  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
senecionine  (ISO)
Senkirkine  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP,ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12730828   PMID:15632090  


Genomics

Comparative Map Data
Vps13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8768,436,996 - 69,013,574 (+)NCBIGRCr8
mRatBN7.2766,557,862 - 67,128,429 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl766,558,471 - 67,128,429 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx768,447,001 - 69,016,940 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0770,649,629 - 71,219,546 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0770,517,478 - 71,087,415 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0774,118,834 - 74,722,341 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl775,852,610 - 75,858,812 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0774,281,753 - 74,879,196 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4770,839,616 - 71,464,951 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1770,860,765 - 71,486,400 (+)NCBI
Celera763,647,181 - 64,211,271 (+)NCBICelera
Cytogenetic Map7q22NCBI
VPS13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38899,013,274 - 99,877,580 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl899,013,266 - 99,877,580 (+)EnsemblGRCh38hg38GRCh38
GRCh378100,025,502 - 100,889,808 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368100,094,670 - 100,958,984 (+)NCBINCBI36Build 36hg18NCBI36
Build 348100,094,669 - 100,659,188NCBI
Celera896,211,225 - 97,075,608 (+)NCBICelera
Cytogenetic Map8q22.2NCBI
HuRef895,228,270 - 96,092,444 (+)NCBIHuRef
CHM1_18100,066,127 - 100,930,595 (+)NCBICHM1_1
T2T-CHM13v2.08100,138,009 - 101,002,539 (+)NCBIT2T-CHM13v2.0
Vps13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391535,371,264 - 35,931,375 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1535,371,306 - 35,931,375 (+)EnsemblGRCm39 Ensembl
GRCm381535,371,118 - 35,931,229 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1535,371,160 - 35,931,229 (+)EnsemblGRCm38mm10GRCm38
MGSCv371535,301,301 - 35,860,984 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361535,315,749 - 35,875,818 (+)NCBIMGSCv36mm8
Celera1535,993,318 - 36,557,254 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.46NCBI
Vps13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541714,570,904 - 15,227,877 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541714,570,399 - 15,228,106 (+)NCBIChiLan1.0ChiLan1.0
VPS13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27116,363,832 - 117,232,626 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1891,905,413 - 92,771,553 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0895,659,443 - 96,525,316 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1897,837,674 - 98,700,162 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl897,860,720 - 98,698,271 (+)Ensemblpanpan1.1panPan2
VPS13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1131,101,226 - 1,834,933 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl131,101,610 - 1,871,225 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha131,096,682 - 1,830,492 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0131,253,509 - 1,988,060 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl131,253,722 - 1,988,056 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1131,096,002 - 1,830,212 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0131,203,819 - 1,943,474 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0131,210,806 - 1,944,933 (+)NCBIUU_Cfam_GSD_1.0
Vps13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530335,855,538 - 36,526,292 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647043,281,469 - 43,951,805 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647043,281,905 - 43,952,523 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl437,090,936 - 37,820,419 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1437,085,929 - 37,821,159 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2440,006,383 - 40,389,291 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VPS13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1893,899,666 - 94,737,123 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl893,901,284 - 94,735,262 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603945,953,328 - 46,821,705 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247636,102,674 - 6,864,817 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247636,101,943 - 6,866,457 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vps13b
2758 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:329
Count of miRNA genes:218
Interacting mature miRNAs:252
Transcripts:ENSRNOT00000033021
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat

Markers in Region
DXRat132  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21855,054,094 - 55,054,132 (-)MAPPERmRatBN7.2
mRatBN7.2X116,926,119 - 116,926,150 (+)MAPPERmRatBN7.2
Rnor_6.0774,457,911 - 74,458,114NCBIRnor6.0
Rnor_5.0774,623,381 - 74,623,584UniSTSRnor5.0
RGSC_v3.4X28,213,292 - 28,213,492RGDRGSC3.4
RGSC_v3.4X28,213,293 - 28,213,496UniSTSRGSC3.4
RGSC_v3.1X28,266,761 - 28,266,961RGD
CeleraX16,965,657 - 16,965,860UniSTS
SHRSP x BN MapX3.51RGD
SHRSP x BN MapX3.51UniSTS
Cytogenetic Map7q22UniSTS
D7Got258  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2766,951,413 - 66,951,646 (+)MAPPERmRatBN7.2
Rnor_6.0774,536,115 - 74,536,347NCBIRnor6.0
Rnor_5.0774,695,125 - 74,695,357UniSTSRnor5.0
RGSC_v3.4771,280,211 - 71,280,443UniSTSRGSC3.4
Celera764,035,468 - 64,035,700UniSTS
Cytogenetic Map7q22UniSTS
RH130106  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2767,127,249 - 67,127,438 (+)MAPPERmRatBN7.2
Rnor_6.0774,721,162 - 74,721,350NCBIRnor6.0
Rnor_5.0774,878,017 - 74,878,205UniSTSRnor5.0
RGSC_v3.4771,463,775 - 71,463,963UniSTSRGSC3.4
Celera764,210,092 - 64,210,280UniSTS
RH 3.4 Map7639.8UniSTS
Cytogenetic Map7q22UniSTS
28.MHAa64g4.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2766,995,869 - 66,996,007 (+)MAPPERmRatBN7.2
Rnor_6.0774,582,552 - 74,582,689NCBIRnor6.0
Rnor_5.0774,742,186 - 74,742,323UniSTSRnor5.0
RGSC_v3.4771,331,251 - 71,331,388UniSTSRGSC3.4
Celera764,078,535 - 64,078,672UniSTS
Cytogenetic Map7q22UniSTS
D15Mit56  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2767,007,877 - 67,007,973 (+)MAPPERmRatBN7.2
Rnor_6.0774,595,159 - 74,595,254NCBIRnor6.0
Rnor_5.0774,753,832 - 74,753,927UniSTSRnor5.0
RGSC_v3.4771,344,190 - 71,344,285UniSTSRGSC3.4
Celera764,090,973 - 64,091,068UniSTS
Cytogenetic Map7q22UniSTS
BI302144  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2766,569,796 - 66,569,977 (+)MAPPERmRatBN7.2
Rnor_6.0774,130,157 - 74,130,337NCBIRnor6.0
Rnor_5.0774,295,361 - 74,295,541UniSTSRnor5.0
RGSC_v3.4770,851,096 - 70,851,276UniSTSRGSC3.4
Celera763,658,504 - 63,658,684UniSTS
RH 3.4 Map7640.18UniSTS
Cytogenetic Map7q22UniSTS
AU048643  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0774,457,925 - 74,458,050NCBIRnor6.0
Rnor_5.0774,623,395 - 74,623,520UniSTSRnor5.0
RGSC_v3.4X28,213,357 - 28,213,482UniSTSRGSC3.4
CeleraX16,965,671 - 16,965,796UniSTS
Cytogenetic Map7q22UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000079740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl775,852,610 - 75,856,798 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl775,852,610 - 75,858,812 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094539   ⟹   ENSRNOP00000093776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl766,558,471 - 67,127,314 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105415   ⟹   ENSRNOP00000077378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl766,558,471 - 67,128,429 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114232   ⟹   ENSRNOP00000094909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl766,558,471 - 67,128,429 (+)Ensembl
RefSeq Acc Id: NM_001134886   ⟹   NP_001128358
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,443,655 - 69,013,574 (+)NCBI
mRatBN7.2766,558,471 - 67,128,429 (+)NCBI
Rnor_6.0774,118,834 - 74,722,341 (+)NCBI
Rnor_5.0774,281,753 - 74,879,196 (+)NCBI
RGSC_v3.4770,839,616 - 71,464,951 (+)RGD
Celera763,647,181 - 64,211,271 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039079215   ⟹   XP_038935143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 69,013,574 (+)NCBI
mRatBN7.2766,557,862 - 67,128,427 (+)NCBI
RefSeq Acc Id: XM_039079216   ⟹   XP_038935144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,468,961 - 69,013,574 (+)NCBI
mRatBN7.2766,583,796 - 67,128,427 (+)NCBI
RefSeq Acc Id: XM_039079218   ⟹   XP_038935146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 69,013,574 (+)NCBI
mRatBN7.2766,557,862 - 67,128,427 (+)NCBI
RefSeq Acc Id: XM_039079219   ⟹   XP_038935147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 69,013,574 (+)NCBI
mRatBN7.2766,557,862 - 67,128,427 (+)NCBI
RefSeq Acc Id: XM_039079220   ⟹   XP_038935148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,484,144 - 69,013,574 (+)NCBI
mRatBN7.2766,598,884 - 67,128,427 (+)NCBI
RefSeq Acc Id: XM_039079221   ⟹   XP_038935149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 68,996,009 (+)NCBI
mRatBN7.2766,557,862 - 67,111,055 (+)NCBI
RefSeq Acc Id: XM_039079222   ⟹   XP_038935150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,758,937 - 69,013,574 (+)NCBI
mRatBN7.2766,873,780 - 67,128,427 (+)NCBI
RefSeq Acc Id: XM_039079223   ⟹   XP_038935151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,763,685 - 69,013,574 (+)NCBI
mRatBN7.2766,878,527 - 67,128,427 (+)NCBI
RefSeq Acc Id: XM_039079224   ⟹   XP_038935152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 68,837,185 (+)NCBI
mRatBN7.2766,557,863 - 66,952,996 (+)NCBI
RefSeq Acc Id: XM_063263566   ⟹   XP_063119636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,480,952 - 69,013,574 (+)NCBI
RefSeq Acc Id: XM_063263567   ⟹   XP_063119637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,491,595 - 69,013,574 (+)NCBI
RefSeq Acc Id: XM_063263568   ⟹   XP_063119638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,544,753 - 69,013,574 (+)NCBI
RefSeq Acc Id: XM_063263570   ⟹   XP_063119640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 68,821,744 (+)NCBI
RefSeq Acc Id: XM_063263571   ⟹   XP_063119641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 68,797,987 (+)NCBI
RefSeq Acc Id: XM_063263572   ⟹   XP_063119642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 68,798,181 (+)NCBI
RefSeq Acc Id: XM_063263573   ⟹   XP_063119643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 68,797,985 (+)NCBI
RefSeq Acc Id: XM_063263574   ⟹   XP_063119644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 68,605,064 (+)NCBI
RefSeq Acc Id: XM_063263575   ⟹   XP_063119645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 68,594,566 (+)NCBI
RefSeq Acc Id: XR_010052974
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8768,436,996 - 68,674,173 (+)NCBI
RefSeq Acc Id: NP_001128358   ⟸   NM_001134886
- UniProtKB: A0A8I5Y7Q0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038935143   ⟸   XM_039079215
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038935146   ⟸   XM_039079218
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AM06 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935147   ⟸   XM_039079219
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038935149   ⟸   XM_039079221
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AKJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935152   ⟸   XM_039079224
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038935144   ⟸   XM_039079216
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935148   ⟸   XM_039079220
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038935150   ⟸   XM_039079222
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038935151   ⟸   XM_039079223
- Peptide Label: isoform X11
Ensembl Acc Id: ENSRNOP00000077378   ⟸   ENSRNOT00000105415
Ensembl Acc Id: ENSRNOP00000093776   ⟸   ENSRNOT00000094539
Ensembl Acc Id: ENSRNOP00000094909   ⟸   ENSRNOT00000114232
RefSeq Acc Id: XP_063119640   ⟸   XM_063263570
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063119642   ⟸   XM_063263572
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063119641   ⟸   XM_063263571
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063119643   ⟸   XM_063263573
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063119644   ⟸   XM_063263574
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063119645   ⟸   XM_063263575
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063119636   ⟸   XM_063263566
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063119637   ⟸   XM_063263567
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063119638   ⟸   XM_063263568
- Peptide Label: isoform X9
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311183 AgrOrtholog
BioCyc Gene G2FUF-33662 BioCyc
Ensembl Genes ENSRNOG00000055234 Ensembl
  ENSRNOG00000066252 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000094539.1 UniProtKB/TrEMBL
  ENSRNOT00000105415.1 UniProtKB/TrEMBL
  ENSRNOT00000114232.1 UniProtKB/TrEMBL
InterPro VPS13-like_N UniProtKB/TrEMBL
  VPS13_C UniProtKB/TrEMBL
  VPS13B UniProtKB/TrEMBL
KEGG Report rno:315036 UniProtKB/TrEMBL
NCBI Gene 315036 ENTREZGENE
PANTHER PTHR12517 UniProtKB/TrEMBL
  VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B UniProtKB/TrEMBL
Pfam Chorein_N UniProtKB/TrEMBL
  VPS13_C UniProtKB/TrEMBL
PhenoGen Vps13b PhenoGen
RatGTEx ENSRNOG00000055234 RatGTEx
  ENSRNOG00000066252 RatGTEx
UniProt A0A8I5Y7Q0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKJ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AM06 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Vps13b  vacuolar protein sorting 13 homolog B  LOC102555534  vacuolar protein sorting-associated protein 13B-like  Data merged from RGD:7590658 737654 PROVISIONAL
2016-05-11 Vps13b  vacuolar protein sorting 13 homolog B  Vps13b  vacuolar protein sorting 13 homolog B (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102555534  vacuolar protein sorting-associated protein 13B-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-04-20 Vps13b  vacuolar protein sorting 13 homolog B (yeast)  Cohh1  Cohen syndrome homolog 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cohh1  Cohen syndrome homolog 1   Cohh1_predicted  Cohen syndrome homolog 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cohh1_predicted  Cohen syndrome homolog 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED