Deptor (DEP domain containing MTOR-interacting protein) - Rat Genome Database

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Gene: Deptor (DEP domain containing MTOR-interacting protein) Rattus norvegicus
Analyze
Symbol: Deptor
Name: DEP domain containing MTOR-interacting protein
RGD ID: 1561030
Description: Predicted to enable GTPase regulator activity; phosphatidic acid binding activity; and protein serine/threonine kinase inhibitor activity. Predicted to be involved in several processes, including negative regulation of TOR signaling; negative regulation of cell size; and negative regulation of protein kinase activity. Predicted to be active in lysosomal membrane and plasma membrane. Orthologous to human DEPTOR (DEP domain containing MTOR interacting protein); PARTICIPATES IN mTOR signaling pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DEP domain containing 6; Depdc6; hypothetical protein LOC100359815; LOC100359815; LOC102547145; LOC314979; RGD1561030; similar to DEP domain containing 6; uncharacterized LOC102547145
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8788,404,745 - 88,574,065 (+)NCBIGRCr8
mRatBN7.2786,514,859 - 86,668,817 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl786,514,988 - 86,667,773 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0794,795,161 - 95,000,750 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl794,795,214 - 94,995,809 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0795,520,754 - 95,625,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4791,675,825 - 91,742,576 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera783,308,700 - 83,462,454 (+)NCBICelera
Cytogenetic Map7q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DeptorRathereditary multiple exostoses  ISORGD:13442618554872ClinVar Annotator: match by term: Multiple congenital exostosisClinVarPMID:10679937|PMID:11391482|PMID:19810120|PMID:28492532|PMID:29126381
DeptorRattrichorhinophalangeal syndrome type I  ISORGD:13442618554872ClinVar Annotator: match by term: Trichorhinophalangeal dysplasia type IClinVarPMID:25741868

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
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Source
Original Reference(s)
DeptorRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of DEPTOR mRNA]CTDPMID:31150632
DeptorRat(1->4)-beta-D-glucan multiple interactionsISORGD:16206886480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of DEPTOR mRNACTDPMID:36331819
DeptorRat1,2-dichloroethane decreases expressionISORGD:16206886480464ethylene dichloride results in decreased expression of DEPTOR mRNACTDPMID:28189721|PMID:28960355
DeptorRat17alpha-ethynylestradiol affects expressionISORGD:13442616480464Ethinyl Estradiol affects the expression of DEPTOR mRNACTDPMID:20170705
DeptorRat17alpha-ethynylestradiol decreases expressionISORGD:16206886480464Ethinyl Estradiol results in decreased expression of DEPTOR mRNACTDPMID:17942748
DeptorRat17alpha-ethynylestradiol multiple interactionsISORGD:16206886480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in decreased expression of DEPTOR mRNACTDPMID:17942748
DeptorRat17alpha-ethynylestradiol affects expressionISORGD:16206886480464Ethinyl Estradiol affects the expression of DEPTOR mRNACTDPMID:17555576
DeptorRat17alpha-ethynylestradiol increases expressionISORGD:13442616480464Ethinyl Estradiol results in increased expression of DEPTOR mRNACTDPMID:18936297
DeptorRat17beta-estradiol increases expressionISORGD:13442616480464Estradiol results in increased expression of DEPTOR mRNACTDPMID:19167446|PMID:19619570|PMID:23019147|PMID:25321415|PMID:31614463|PMID:33419253|PMID:36828454
DeptorRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of DEPTOR mRNACTDPMID:35192832
DeptorRat17beta-estradiol affects expressionEXP 6480464Estradiol affects the expression of DEPTOR mRNACTDPMID:32145629
DeptorRat17beta-estradiol multiple interactionsISORGD:13442616480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of DEPTOR mRNACTDPMID:19619570
DeptorRat17beta-hydroxy-5alpha-androstan-3-one multiple interactionsISORGD:13442616480464bicalutamide inhibits the reaction [Dihydrotestosterone results in decreased expression of DEPTOR mRNA]CTDPMID:26558456
DeptorRat17beta-hydroxy-5alpha-androstan-3-one decreases expressionISORGD:13442616480464Dihydrotestosterone results in decreased expression of DEPTOR mRNA; Dihydrotestosterone results in decreased expression of DEPTOR more ...CTDPMID:26558456
DeptorRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:13442616480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of DEPTOR mRNA; [Tetrachlorodibenzodioxin co-treated with 2-methyl-2H-pyrazole-3-carboxylic more ...CTDPMID:19619570|PMID:29704546
DeptorRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of DEPTOR mRNACTDPMID:33387578
DeptorRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of DEPTOR mRNACTDPMID:32109520
DeptorRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:16206886480464Tetrachlorodibenzodioxin affects the expression of DEPTOR mRNACTDPMID:26377647
DeptorRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:16206886480464[Tetrachlorodibenzodioxin binds to AHR protein] which results in increased expression of DEPTOR mRNA; [Tetrachlorodibenzodioxin co-treated more ...CTDPMID:16214954|PMID:17942748|PMID:25975270
DeptorRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:16206886480464Tetrachlorodibenzodioxin results in decreased expression of DEPTOR mRNACTDPMID:19933214|PMID:33956508

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Biological Process
1 to 19 of 19 rows

  
Object Symbol
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Reference
Notes
Source
Original Reference(s)
DeptorRatG protein-coupled receptor signaling pathway involved_inIBAMGI:3040696|PANTHER:PTN001107228|UniProtKB:Q70Z351600115GO_REF:0000033GO_CentralGO_REF:0000033
DeptorRatintracellular signal transduction involved_inIEAInterPro:IPR0005911600115GO_REF:0000002InterProGO_REF:0000002
DeptorRatnegative regulation of cell size involved_inISORGD:13442611624291 PMID:19446321RGDPMID:19446321
DeptorRatnegative regulation of cell size involved_inIEAUniProtKB:Q8TB45|ensembl:ENSP000002862341600115GO_REF:0000107EnsemblGO_REF:0000107
DeptorRatnegative regulation of protein kinase activity involved_inISORGD:13442611624291 PMID:19446321RGDPMID:19446321
DeptorRatnegative regulation of TOR signaling involved_inISORGD:13442611624291 PMID:19446321RGDPMID:19446321
DeptorRatnegative regulation of TOR signaling involved_inIEAUniProtKB:Q8TB45|ensembl:ENSP000002862341600115GO_REF:0000107EnsemblGO_REF:0000107
DeptorRatnegative regulation of TOR signaling involved_inIEAInterPro:IPR037335|InterPro:IPR0373361600115GO_REF:0000002InterProGO_REF:0000002
DeptorRatnegative regulation of TOR signaling involved_inIEAInterPro:IPR0373361600115GO_REF:0000002InterProGO_REF:0000002
DeptorRatnegative regulation of TORC1 signaling involved_inISORGD:13442611624291UniProtKB:Q96G74 PMID:22017875, PMID:22017876, PMID:22017877, PMID:25936805, PMID:33110214, PMID:33865870, PMID:34519268, PMID:34519269, PMID:34634301RGDPMID:22017875|PMID:22017876|PMID:22017877|PMID:25936805|PMID:33110214|PMID:33865870|PMID:34519268|PMID:34519269|PMID:34634301
DeptorRatnegative regulation of TORC1 signaling involved_inIEAUniProtKB:Q8TB45|ensembl:ENSP000002862341600115GO_REF:0000107EnsemblGO_REF:0000107
DeptorRatnegative regulation of TORC1 signaling involved_inIBAPANTHER:PTN004570354|UniProtKB:Q8TB451600115GO_REF:0000033GO_CentralGO_REF:0000033
DeptorRatnegative regulation of TORC2 signaling involved_inISORGD:13442611624291UniProtKB:Q96G74 PMID:25936805, PMID:33110214, PMID:33865870, PMID:34519268, PMID:34634301RGDPMID:25936805|PMID:33110214|PMID:33865870|PMID:34519268|PMID:34634301
DeptorRatnegative regulation of TORC2 signaling involved_inIEAUniProtKB:Q8TB45|ensembl:ENSP000002862341600115GO_REF:0000107EnsemblGO_REF:0000107
DeptorRatnegative regulation of TORC2 signaling involved_inIBAPANTHER:PTN004570354|UniProtKB:Q8TB451600115GO_REF:0000033GO_CentralGO_REF:0000033
DeptorRatpositive regulation of autophagy involved_inISORGD:13442611624291 PMID:22017875, PMID:22017876, PMID:22017877RGDPMID:22017875|PMID:22017876|PMID:22017877
DeptorRatpositive regulation of autophagy involved_inIEAUniProtKB:Q8TB45|ensembl:ENSP000002862341600115GO_REF:0000107EnsemblGO_REF:0000107
DeptorRatregulation of extrinsic apoptotic signaling pathway involved_inISORGD:13442611624291 PMID:19446321RGDPMID:19446321
DeptorRatregulation of extrinsic apoptotic signaling pathway involved_inIEAUniProtKB:Q8TB45|ensembl:ENSP000002862341600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component

  
Object Symbol
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Reference
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Original Reference(s)
DeptorRatlysosomal membrane is_active_inISORGD:13442611624291 PMID:25936805RGDPMID:25936805
DeptorRatlysosomal membrane is_active_inIEAUniProtKB:Q8TB45|ensembl:ENSP000002862341600115GO_REF:0000107EnsemblGO_REF:0000107
DeptorRatplasma membrane is_active_inIBAMGI:1923385|PANTHER:PTN0011072281600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
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Object Symbol
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Source
Original Reference(s)
DeptorRatGTPase activator activity enablesIBAPANTHER:PTN001107227|UniProtKB:Q70Z351600115GO_REF:0000033GO_CentralGO_REF:0000033
DeptorRatguanyl-nucleotide exchange factor activity enablesIBAPANTHER:PTN001107227|UniProtKB:Q70Z351600115GO_REF:0000033GO_CentralGO_REF:0000033
DeptorRatphosphatidic acid binding enablesISORGD:13442611624291 PMID:25936805, PMID:33865870RGDPMID:25936805|PMID:33865870
DeptorRatphosphatidic acid binding enablesIEAUniProtKB:Q8TB45|ensembl:ENSP000002862341600115GO_REF:0000107EnsemblGO_REF:0000107
DeptorRatprotein binding enablesISORGD:13442611624291UniProtKB:P42345|UniProtKB:P42346|UniProtKB:Q13077|UniProtKB:Q8TBZ0|UniProtKB:Q9UPX6|UniProtKB:Q9Y2K2|UniProtKB:X5D778 PMID:19446321, PMID:25416956, PMID:30080879, PMID:30232230, PMID:32296183RGDPMID:19446321|PMID:25416956|PMID:30080879|PMID:30232230|PMID:32296183
DeptorRatprotein kinase inhibitor activity enablesISORGD:13442611624291 PMID:22017875, PMID:22017876, PMID:22017877, PMID:25936805, PMID:34519268, PMID:34519269RGDPMID:22017875|PMID:22017876|PMID:22017877|PMID:25936805|PMID:34519268|PMID:34519269
DeptorRatprotein kinase inhibitor activity enablesIEAUniProtKB:Q8TB45|ensembl:ENSP000002862341600115GO_REF:0000107EnsemblGO_REF:0000107
DeptorRatprotein serine/threonine kinase inhibitor activity enablesISORGD:13442611624291 PMID:22017875, PMID:22017876RGDPMID:22017875|PMID:22017876
DeptorRatprotein serine/threonine kinase inhibitor activity enablesIEAUniProtKB:Q8TB45|ensembl:ENSP000002862341600115GO_REF:0000107EnsemblGO_REF:0000107
DeptorRatprotein serine/threonine kinase inhibitor activity enablesIBAPANTHER:PTN001107227|UniProtKB:Q8TB451600115GO_REF:0000033GO_CentralGO_REF:0000033
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RGD Manual Annotations


  
Object Symbol
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Source
Original Reference(s)
DeptorRatmTOR signaling pathway   ISORGD:134426111535033 RGD 

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DeptorRatmTOR signaling pathway   ISORGD:13442616484113 PIDPID:200096

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. mTOR signaling in growth control and disease. Laplante M and Sabatini DM, Cell. 2012 Apr 13;149(2):274-93. doi: 10.1016/j.cell.2012.03.017.
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:19446321   PMID:25159114   PMID:29397070   PMID:31176743  



Deptor
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8788,404,745 - 88,574,065 (+)NCBIGRCr8
mRatBN7.2786,514,859 - 86,668,817 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl786,514,988 - 86,667,773 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0794,795,161 - 95,000,750 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl794,795,214 - 94,995,809 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0795,520,754 - 95,625,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4791,675,825 - 91,742,576 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera783,308,700 - 83,462,454 (+)NCBICelera
Cytogenetic Map7q32NCBI
DEPTOR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388119,873,722 - 120,050,918 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8119,873,717 - 120,050,918 (+)EnsemblGRCh38hg38GRCh38
GRCh378120,885,962 - 121,063,157 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368120,955,146 - 121,131,939 (+)NCBINCBI36Build 36hg18NCBI36
Build 348120,955,145 - 121,131,937NCBI
Celera8117,075,022 - 117,252,280 (+)NCBICelera
Cytogenetic Map8q24.12NCBI
HuRef8116,206,531 - 116,383,857 (+)NCBIHuRef
CHM1_18120,926,730 - 121,103,852 (+)NCBICHM1_1
T2T-CHM13v2.08121,002,533 - 121,179,716 (+)NCBIT2T-CHM13v2.0
Deptor
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391554,975,824 - 55,122,667 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1554,975,713 - 55,122,667 (+)EnsemblGRCm39 Ensembl
GRCm381555,112,317 - 55,259,273 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1555,112,317 - 55,259,271 (+)EnsemblGRCm38mm10GRCm38
MGSCv371554,944,038 - 55,085,757 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361554,942,566 - 55,084,285 (+)NCBIMGSCv36mm8
Celera1556,652,905 - 56,794,634 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1521.96NCBI
Deptor
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541725,538,578 - 25,566,772 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541725,538,609 - 25,563,374 (+)NCBIChiLan1.0ChiLan1.0
DEPTOR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27137,299,270 - 137,484,402 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18112,811,180 - 112,996,385 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08116,563,935 - 116,743,843 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18119,311,942 - 119,492,127 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8119,311,942 - 119,492,127 (+)Ensemblpanpan1.1panPan2
DEPTOR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11318,859,526 - 18,993,464 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1318,859,634 - 18,988,583 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1318,872,396 - 19,007,464 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01319,188,815 - 19,323,823 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1319,188,882 - 19,320,795 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11318,915,849 - 19,051,161 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01319,015,161 - 19,150,366 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01319,246,027 - 19,381,218 (+)NCBIUU_Cfam_GSD_1.0
Deptor
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530319,272,854 - 19,411,349 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647026,704,021 - 26,837,470 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647026,698,707 - 26,837,470 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEPTOR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl418,976,743 - 19,180,117 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1418,969,509 - 19,180,131 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2420,001,488 - 20,186,277 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DEPTOR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18114,442,212 - 114,626,411 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8114,442,379 - 114,625,171 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603925,660,666 - 25,847,582 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Deptor
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476317,935,108 - 17,956,909 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476317,935,171 - 17,956,858 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Deptor
1196 total Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
7 94929214 94929215 T G snv FHL/EurMcwi (MCW) View more Information
7 94929225 94929226 G A snv ACI/EurMcwi (RGD) View more Information

Predicted Target Of
Summary Value
Count of predictions:141
Count of miRNA genes:103
Interacting mature miRNAs:113
Transcripts:ENSRNOT00000005722, ENSRNOT00000064270
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat

1 to 10 of 44 rows
D15Mit183  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2786,591,855 - 86,592,031 (+)MAPPERmRatBN7.2
Rnor_6.0794,923,611 - 94,923,786NCBIRnor6.0
Rnor_5.0795,548,730 - 95,548,905UniSTSRnor5.0
RGSC_v3.4791,670,316 - 91,670,491UniSTSRGSC3.4
Cytogenetic Map7q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000005722   ⟹   ENSRNOP00000005722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl786,514,988 - 86,663,778 (+)Ensembl
Rnor_6.0 Ensembl794,795,214 - 94,995,809 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095532   ⟹   ENSRNOP00000093077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl786,514,992 - 86,667,773 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105476   ⟹   ENSRNOP00000097828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl786,561,637 - 86,663,778 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119008   ⟹   ENSRNOP00000080538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl786,514,988 - 86,666,888 (+)Ensembl
RefSeq Acc Id: NM_001427213   ⟹   NP_001414142
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8788,404,745 - 88,558,561 (+)NCBI
RefSeq Acc Id: XM_017595234   ⟹   XP_017450723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8788,404,767 - 88,558,561 (+)NCBI
mRatBN7.2786,514,859 - 86,668,817 (+)NCBI
Rnor_6.0794,795,161 - 95,000,750 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063263556   ⟹   XP_063119626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8788,404,767 - 88,574,065 (+)NCBI
RefSeq Acc Id: XM_063263557   ⟹   XP_063119627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8788,404,767 - 88,574,065 (+)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_001414142 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450723 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119626 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119627 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16252 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005722
  ENSRNOP00000005722.6
  ENSRNOP00000080538.1
  ENSRNOP00000093077
  ENSRNOP00000093077.1
  ENSRNOP00000097828.1
1 to 11 of 11 rows
RefSeq Acc Id: XP_017450723   ⟸   XM_017595234
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000005722   ⟸   ENSRNOT00000005722
Ensembl Acc Id: ENSRNOP00000097828   ⟸   ENSRNOT00000105476
Ensembl Acc Id: ENSRNOP00000093077   ⟸   ENSRNOT00000095532
Ensembl Acc Id: ENSRNOP00000080538   ⟸   ENSRNOT00000119008
DEP   PDZ

Name Modeler Protein Id AA Range Protein Structure
AF-F1M8Y4-F1-model_v2 AlphaFold F1M8Y4 1-409 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695355
Promoter ID:EPDNEW_R5860
Type:multiple initiation site
Name:Deptor_1
Description:DEP domain containing MTOR-interacting protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0794,795,310 - 94,795,370EPDNEW


1 to 35 of 35 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-33380 BioCyc
Ensembl Genes ENSRNOG00000004328 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005722 ENTREZGENE
  ENSRNOT00000005722.9 UniProtKB/TrEMBL
  ENSRNOT00000095532 ENTREZGENE
  ENSRNOT00000095532.1 UniProtKB/TrEMBL
  ENSRNOT00000105476.1 UniProtKB/TrEMBL
  ENSRNOT00000119008.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
InterPro DEP_dom UniProtKB/TrEMBL
  DEPTOR_DEP_1 UniProtKB/TrEMBL
  DEPTOR_DEP_2 UniProtKB/TrEMBL
  mTOR-Rac_regulators UniProtKB/TrEMBL
  PDZ/DHR/GLGF UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene 314979 ENTREZGENE
PANTHER DEP DOMAIN PROTEIN UniProtKB/TrEMBL
  PTHR22829:SF18 UniProtKB/TrEMBL
Pfam DEP UniProtKB/TrEMBL
PhenoGen Deptor PhenoGen
PROSITE DEP UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004328 RatGTEx
SMART DEP UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
Superfamily-SCOP PDZ UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
UniProt A0A8I5ZQX9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B6C9_RAT UniProtKB/TrEMBL
  A6HRG9 ENTREZGENE, UniProtKB/TrEMBL
  F1M8Y4 ENTREZGENE, UniProtKB/TrEMBL
1 to 35 of 35 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Deptor  DEP domain containing MTOR-interacting protein  LOC102547145  uncharacterized LOC102547145  Data merged from RGD:7615485 737654 PROVISIONAL
2015-07-29 Deptor  DEP domain containing MTOR-interacting protein  LOC100359815  hypothetical protein LOC100359815  Data merged from RGD:2323326 737654 PROVISIONAL
2013-12-18 LOC102547145  uncharacterized LOC102547145      Symbol and Name status set to provisional 70820 PROVISIONAL
2011-08-02 Deptor  DEP domain containing MTOR-interacting protein  Depdc6  DEP domain containing 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100359815  hypothetical protein LOC100359815      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-16 Depdc6  DEP domain containing 6   RGD1561030  similar to DEP domain containing 6   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561030  similar to DEP domain containing 6   RGD1561030_predicted  similar to DEP domain containing 6 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561030_predicted  similar to DEP domain containing 6 (predicted)  LOC314979  similar to DEP domain containing 6  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC314979  similar to DEP domain containing 6      Symbol and Name status set to provisional 70820 PROVISIONAL