Slc25a32 (solute carrier family 25 member 32)

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Gene: Slc25a32 (solute carrier family 25 member 32) Rattus norvegicus

Analyze

Symbol:

Slc25a32

Name:

solute carrier family 25 member 32

RGD ID:

1565789

Description:

Predicted to enable FAD transmembrane transporter activity and folic acid transmembrane transporter activity. Predicted to be involved in folate import into mitochondrion and mitochondrial FAD transmembrane transport. Predicted to be located in membrane. Predicted to be active in mitochondrion. Orthologous to human SLC25A32 (solute carrier family 25 member 32); PARTICIPATES IN folate cycle metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC315023; mitochondrial folate transporter/carrier; RGD1565789; similar to Mitochondrial folate transporter/carrier; solute carrier family 25 (mitochondrial folate carrier) , member 32; solute carrier family 25, member 32

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC25A32 (solute carrier family 25 member 32)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc25a32 (solute carrier family 25, member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc25a32 (solute carrier family 25 member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC25A32 (solute carrier family 25 member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC25A32 (solute carrier family 25 member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc25a32 (solute carrier family 25 member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC25A32 (solute carrier family 25 member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC25A32 (solute carrier family 25 member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc25a32 (solute carrier family 25 member 32)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Slc25a32 (solute carrier family 25, member 32)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SLC25A32 (solute carrier family 25 member 32)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc25a32a (solute carrier family 25 member 32a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	slc25a32b (solute carrier family 25 member 32b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	FLX1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG8026	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	slc-25A32	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YEA6	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YIA6	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc25a32	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	70,142,958 - 70,160,726 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	70,142,964 - 70,160,770 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	72,017,303 - 72,033,881 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	74,219,879 - 74,236,394 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	74,087,902 - 74,104,480 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	77,983,885 - 78,005,058 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	77,987,212 - 78,004,975 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	78,244,446 - 78,265,340 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	74,650,541 - 74,668,358 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	67,199,377 - 67,217,144 (-)	NCBI		Celera
Cytogenetic Map	7	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cohen syndrome (ISO)

Exercise Intolerance (ISO)

genetic disease (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(2,4,5-trichlorophenoxy)acetic acid (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

aldrin (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

bromobenzene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlordecone (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

fipronil (EXP)

folic acid (ISO)

furan (EXP)

inulin (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

sevoflurane (EXP)

sunitinib (ISO)

tetrachloromethane (ISO)

valproic acid (ISO)

valsartan (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

folate import into mitochondrion (IBA,ISO)

mitochondrial FAD transmembrane transport (ISO)

Cellular Component

membrane (IEA)

mitochondrion (IBA,ISO)

Molecular Function

FAD transmembrane transporter activity (IBA)

folic acid transmembrane transporter activity (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

folate cycle metabolic pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation
6.	Trafficking of intracellular folates.	Stover PJ and Field MS, Adv Nutr. 2011 Jul;2(4):325-31. doi: 10.3945/¿an.111.000596. Epub 2011 Jun 28.

Additional References at PubMed

PMID:12477932	PMID:15140890	PMID:16165386	PMID:18614015	PMID:21956163	PMID:29666258

Genomics

Comparative Map Data

Slc25a32
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	70,142,958 - 70,160,726 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	70,142,964 - 70,160,770 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	72,017,303 - 72,033,881 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	74,219,879 - 74,236,394 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	74,087,902 - 74,104,480 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	77,983,885 - 78,005,058 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	77,987,212 - 78,004,975 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	78,244,446 - 78,265,340 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	74,650,541 - 74,668,358 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	67,199,377 - 67,217,144 (-)	NCBI		Celera
Cytogenetic Map	7	q31	NCBI

SLC25A32
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	103,398,638 - 103,415,107 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	8	103,398,635 - 103,415,189 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	104,410,866 - 104,427,335 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	104,480,042 - 104,496,447 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	100,597,407 - 100,614,007 (-)	NCBI		Celera
Cytogenetic Map	8	q22.3	NCBI
HuRef	8	99,611,217 - 99,627,912 (-)	NCBI		HuRef
CHM1_1	8	104,451,666 - 104,468,362 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	104,526,288 - 104,542,756 (-)	NCBI		T2T-CHM13v2.0

Slc25a32
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	38,954,625 - 38,976,213 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	38,954,626 - 38,976,111 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	39,091,230 - 39,112,720 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	39,091,231 - 39,112,716 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	38,925,737 - 38,944,262 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	38,924,354 - 38,942,718 (-)	NCBI		MGSCv36	mm8
Celera	15	39,580,990 - 39,600,127 (-)	NCBI		Celera
Cytogenetic Map	15	B3.1	NCBI

Slc25a32
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	27,527,144 - 27,546,043 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	27,530,806 - 27,545,103 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC25A32
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	8	96,301,065 - 96,317,356 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	100,054,560 - 100,071,016 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	102,210,068 - 102,226,732 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	102,210,068 - 102,226,732 (-)	Ensembl	panpan1.1		panPan2

SLC25A32
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	4,821,065 - 4,835,113 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	4,648,759 - 4,835,023 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	4,822,424 - 4,838,633 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	4,982,954 - 4,999,194 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	4,985,138 - 4,999,147 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	4,823,284 - 4,839,496 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	4,941,238 - 4,957,413 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	4,953,984 - 4,970,198 (-)	NCBI		UU_Cfam_GSD_1.0

Slc25a32
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	32,931,025 - 32,944,415 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	40,357,446 - 40,370,514 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936470	40,357,066 - 40,370,514 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC25A32
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	33,704,771 - 33,730,130 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	33,704,810 - 33,727,796 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	36,477,318 - 36,499,720 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC25A32
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	98,256,793 - 98,271,347 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	98,254,852 - 98,271,514 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	42,330,381 - 42,346,408 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc25a32
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	19,933,107 - 19,955,040 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624763	19,934,120 - 19,955,317 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc25a32
76 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	658
Count of miRNA genes:	284
Interacting mature miRNAs:	359
Transcripts:	ENSRNOT00000006029
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	9462246	98011544	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	19654317	84928080	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	29409683	74409683	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	29409683	84928080	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	31112832	76112832	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	34293282	79293282	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	34293282	79293282	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	37960569	82960569	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	41333674	119109060	Rat
634326	Hc3	Hypercalciuria QTL 3	2.1		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	7	42787314	87787314	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	43228750	88228750	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	43747012	108555253	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	43747099	102228765	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	44421311	118198041	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	44867533	89867533	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	46590070	91590070	Rat
2293696	Bmd32	Bone mineral density QTL 32	5.1	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	7	47651439	92651439	Rat
2293707	Bss32	Bone structure and strength QTL 32	7.64	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	47651439	92651439	Rat
2300178	Bmd54	Bone mineral density QTL 54	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	7	47651439	92651439	Rat
2293644	Bmd29	Bone mineral density QTL 29	5.4	0.0001	femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	7	47651439	92651439	Rat
2293667	Bss42	Bone structure and strength QTL 42	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	7	47651439	92651439	Rat
2293678	Bss24	Bone structure and strength QTL 24	6.71	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	7	47651439	92651439	Rat
2293685	Bmd21	Bone mineral density QTL 21	4.2	0.0003	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	7	47651439	92651439	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	53612714	103945643	Rat
2317035	Aia16	Adjuvant induced arthritis QTL 16	2.71		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	59238038	104238038	Rat
1298528	Bp169	Blood pressure QTL 169		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	61074194	106074194	Rat
1559283	Emca4	Estrogen-induced mammary cancer QTL 4	3.7		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	7	62004452	101773158	Rat
1576303	Ept7	Estrogen-induced pituitary tumorigenesis QTL 7	3.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	7	62004452	101773158	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	68938720	113886318	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	68938720	113886318	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	68938720	113886318	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	69736226	117455174	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	69736356	112729554	Rat

Markers in Region

D7Rat23

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	70,151,326 - 70,151,553 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	77,995,576 - 77,995,802	NCBI	Rnor6.0
Rnor_5.0	7	78,253,693 - 78,253,919	UniSTS	Rnor5.0
RGSC_v3.4	7	74,658,964 - 74,659,191	RGD	RGSC3.4
RGSC_v3.4	7	74,658,965 - 74,659,191	UniSTS	RGSC3.4
RGSC_v3.1	7	74,679,694 - 74,679,921	RGD
Celera	7	67,207,745 - 67,207,971	UniSTS
SHRSP x BN Map	7	45.53	UniSTS
SHRSP x BN Map	7	45.53	RGD
Cytogenetic Map	7	q22	UniSTS

RH142696

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	70,158,034 - 70,158,156 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	78,002,284 - 78,002,405	NCBI	Rnor6.0
Rnor_5.0	7	78,247,090 - 78,247,211	UniSTS	Rnor5.0
RGSC_v3.4	7	74,665,673 - 74,665,794	UniSTS	RGSC3.4
Celera	7	67,214,453 - 67,214,574	UniSTS
RH 3.4 Map	7	630.5	UniSTS
Cytogenetic Map	7	q22	UniSTS

AW529678

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	70,143,124 - 70,143,290 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	77,987,374 - 77,987,539	NCBI	Rnor6.0
Rnor_5.0	7	78,261,686 - 78,261,851	UniSTS	Rnor5.0
RGSC_v3.4	7	74,650,711 - 74,650,876	UniSTS	RGSC3.4
Celera	7	67,199,544 - 67,199,709	UniSTS
RH 3.4 Map	7	625.3	UniSTS
Cytogenetic Map	7	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			49	34	18	34			14	20	29	9
Low	3	43	8	7	1	7	8	11	60	15	12	2	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001173334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000006029 ⟹ ENSRNOP00000006029

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	70,142,964 - 70,160,770 (-)	Ensembl
Rnor_6.0 Ensembl	7	77,987,212 - 78,004,975 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117696 ⟹ ENSRNOP00000076986

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	70,143,020 - 70,160,750 (-)	Ensembl

RefSeq Acc Id:

NM_001173334 ⟹ NP_001166805

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	70,142,958 - 70,160,726 (-)	NCBI
Rnor_6.0	7	77,987,207 - 78,004,975 (-)	NCBI
Rnor_5.0	7	78,244,446 - 78,265,340 (+)	NCBI
Celera	7	67,199,377 - 67,217,144 (-)	NCBI

Sequence:

show sequence

CGCGGCTTTGCTGGAACTGTGCCTTCTCCGCTGCAGGTCCCGGGCTCCAGTTCCGGAAGTGGGC
TCGCGTCGTGCGGTTCCGGGCCCCGGATCGTGACTGTAGCCACGGTGGCGGCCACTACATCACG
CTCCACGCCGGCGGCGCTGGACGCCGTAGTGTCGACGAGCCCGGAGTCCATGACAAGCCAGGGC
CAGTCGGCGGCCGGGTCGGCGGCATGGAGTGCAGTGTTCCGCCACGTCCGATACGAGAACCTGG
TGGCTGGCGTGAGTGGCGGGGTCTTGTCCAATCTGGCGCTGCACCCGCTCGACCTCGTAAAGAT
CCGCTTCGCTGTGAGTGATGGACTGGAAGTAAGACCAAAATATAAAGGAATTTTACATTGCTTG
GCTACCATTTGGAAAGTCGATGGACTACGTGGACTTTATCAAGGAGTAACCCCGAATGTGTGGG
GTGCCGGTTTATCCTGGGGACTCTACTTTTTCTTTTACAATGCCATCAAATCATATAAGACAGA
GGGAAGAGCTGAACAGTTAGAGGCATTAGAGTACCTCATCTCAGCTGCTGAAGCCGGAGCCATG
ACTCTCTGCATTACAAACCCATTATGGGTGACGAAAACTCGCCTTATGTTACAGTATGGTGGTG
TTGTTAACCCTTCACAGAGACAGTATAAAGGAATGATTGATGCACTTGTGAAGATATATAAATA
TGAAGGTGTACGTGGATTATACAAGGGATTTGTCCCTGGACTGTTTGGAACATCACATGGTGCC
CTTCAGTTTATGGCATATGAAGTGCTAAAGTTGAAGTACAACAAACACATCAATAAATTACCGG
AAGCCCAGCTGAGCACAGCAGAATACATCTCTGTTGCAGCACTATCCAAAATATTTGCGGTGGC
AGCAACATACCCGTATCAGGTTGTGAGAGCCCGTCTTCAGGACCAGCATGTGTCTTATGGCGGT
GTAACCGATGTGATCACAAAGACGTGGAGGAAAGAAGGCATCGGTGGATTTTACAAAGGAATTG
CCCCCAATCTAATTAGAGTGACTCCAGCCTGCTGCATCACCTTTGTGGTTTATGAAAATGTCTC
TCACTTTTTATATGACCTTAGAGAAAAGAAAGTGAGCTAAAAGAAGATCCCAGTGTATGTGCTT
GAAGCAGCAGCAAACTCCTTTGTGTCTGAAACACAAAGCTCGGAAGAGTCCTGCAGAGCAACAT
AGCTCATAATCGCATGTCTGTGGTAGAAGTCACAGGACTGCTAAGTCATCTTGACGTTTCTGCT
CTTTGCTTCTCCGTATGTGTGGAACATGGCTACCTCTCCCTGGAGTGGGTACCATCTGATAATG
TTGAAGCCGATAGCCACTGTGAAAATGTACAAGATCTTCCATTTTGTTGTTCAGGTAGACGCTA
ACTTGCAATATTTATAAATAATTTGATGAGTGTTCTTTTTTTTTTTCCTGAACTCTTTTGCCTG
GATTGGCTTTAAAACTGACCATGTGCAATAGCGAGGAACTGGCTTCTTACAAGAATGACTATAT
TTCACGGGTAAATTAAACCTGGATACTTATAAATAGGTGTTATCCAAGTCTTGCCCATTCTGAA
TGGGGATATTTTTGTTAGAAAAAGTCTATTATAAATGTGCTTAGTGTTAATCCAGCTGGAACAC
ACCAAATACAGAAATTGGAGAAGTCATGTATTTCTCTGAGAAACATCAGGTACCTTCTGCTGTT
CCATTGCTTAATTATTTACAGTGAGGTTCTAGACATAGACCTTACATTTTGGCCCTAAACACTT
ATGTGTGGTTAGGATGTATGCAATCTGAACTTCCAGCACCCGGTGACCCGTCATTTAGCATGTG
CGGCTACAGATCACTCATGAGGAATCCTGGCTCATGTTTCACAGAGATGGAATGTTTGCTGTGA
GTTTGTTGAAAAACTGAATAGAAGTAAACATTCCATTTCCCCTTAATTTTTAGATTTATGGTTC
CAGATTCCAAATGTGTCTACATTGGTTGCTCAGATTCAGGATGAAATACAGATTACACACATGT
GTTTGTGGCCATTACTGGTTTGATTTCTGTGTCACTGTAGATCTCCAGGTGAAAGGCATCCCTG
AAGGACGCTGGACTGACACGGACTCCTCTGTGCAGCTGGCAGTGCTGTGGCACTAGCACCTGTT
GTTTGTAAAAAAAAAAAAAAATCTTTATGATCAAAGCTGTATTTAAAAGGTTCTTTGAAAATAA
GCCTATTTTTTATATTTTGGAAATGGAATTGTTTTTAAAATAAAAAGTAAAAAGATAATTTATA
TTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001166805	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66530	(Get FASTA)	NCBI Sequence Viewer
	EDM16353	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001166805 ⟸ NM_001173334

- UniProtKB:

B2GV53 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSQGQSAAGSAAWSAVFRHVRYENLVAGVSGGVLSNLALHPLDLVKIRFAVSDGLEVRPKYKG
ILHCLATIWKVDGLRGLYQGVTPNVWGAGLSWGLYFFFYNAIKSYKTEGRAEQLEALEYLISAA
EAGAMTLCITNPLWVTKTRLMLQYGGVVNPSQRQYKGMIDALVKIYKYEGVRGLYKGFVPGLFG
TSHGALQFMAYEVLKLKYNKHINKLPEAQLSTAEYISVAALSKIFAVAATYPYQVVRARLQDQH
VSYGGVTDVITKTWRKEGIGGFYKGIAPNLIRVTPACCITFVVYENVSHFLYDLREKKVS

hide sequence

RefSeq Acc Id:

ENSRNOP00000006029 ⟸ ENSRNOT00000006029

RefSeq Acc Id:

ENSRNOP00000076986 ⟸ ENSRNOT00000117696

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2GV53-F1-model_v2	AlphaFold	B2GV53	1-316	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695306

Promoter ID:

EPDNEW_R5831

Type:

multiple initiation site

Name:

Slc25a32_1

Description:

solute carrier family 25 member 32

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	78,004,989 - 78,005,049	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565789	AgrOrtholog
BioCyc Gene	G2FUF-33576	BioCyc
Ensembl Genes	ENSRNOG00000004403	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000006029	ENTREZGENE
	ENSRNOP00000006029.4	UniProtKB/TrEMBL
	ENSRNOP00000076986.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006029	ENTREZGENE
	ENSRNOT00000006029.6	UniProtKB/TrEMBL
	ENSRNOT00000117696.1	UniProtKB/TrEMBL
Gene3D-CATH	1.50.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7189614	IMAGE-MGC_LOAD
InterPro	Mitochondrial_sb/sol_carrier	UniProtKB/TrEMBL
	Mt_carrier_dom	UniProtKB/TrEMBL
	SLC25A32-like	UniProtKB/TrEMBL
KEGG Report	rno:315023	UniProtKB/TrEMBL
MGC_CLONE	MGC:188123	IMAGE-MGC_LOAD
NCBI Gene	315023	ENTREZGENE
PANTHER	MITOCHONDRIAL FOLATE TRANSPORTER/CARRIER	UniProtKB/TrEMBL
	PTHR45683	UniProtKB/TrEMBL
Pfam	Mito_carr	UniProtKB/TrEMBL
PhenoGen	Slc25a32	PhenoGen
PROSITE	SOLCAR	UniProtKB/TrEMBL
Superfamily-SCOP	Mitoch_carrier	UniProtKB/TrEMBL
UniProt	A0A8I5Y115_RAT	UniProtKB/TrEMBL
	B2GV53	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc25a32	solute carrier family 25 member 32	Slc25a32	solute carrier family 25 (mitochondrial folate carrier) , member 32	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-16	Slc25a32	solute carrier family 25 (mitochondrial folate carrier) , member 32	Slc25a32	solute carrier family 25, member 32	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc25a32	solute carrier family 25, member 32	Slc25a32_predicted	solute carrier family 25, member 32 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Slc25a32_predicted	solute carrier family 25, member 32 (predicted)	RGD1565789_predicted	similar to Mitochondrial folate transporter/carrier (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1565789_predicted	similar to Mitochondrial folate transporter/carrier (predicted)	LOC315023	similar to Mitochondrial folate transporter/carrier	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC315023	similar to Mitochondrial folate transporter/carrier			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

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RGD Manual Annotations