Oxr1 (oxidation resistance 1) - Rat Genome Database

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Gene: Oxr1 (oxidation resistance 1) Rattus norvegicus
Analyze
Symbol: Oxr1
Name: oxidation resistance 1
RGD ID: 621857
Description: Predicted to enable oxidoreductase activity. Predicted to be involved in response to oxidative stress. Predicted to act upstream of or within several processes, including adult walking behavior; negative regulation of neuron death; and negative regulation of peptidyl-cysteine S-nitrosylation. Located in nucleolus. Human ortholog(s) of this gene implicated in cerebellar hyplasia/atrophy, epilepsy, and global developmental delay. Orthologous to human OXR1 (oxidation resistance 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: MGC114530; MGC93253; oxidation resistance protein 1; protein C7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2772,528,782 - 72,965,666 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl772,528,786 - 72,965,666 (+)Ensembl
Rnor_6.0780,351,774 - 80,788,094 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl780,351,774 - 80,788,094 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0780,377,737 - 80,579,283 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0780,737,306 - 80,812,054 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4777,427,877 - 77,501,800 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1777,486,043 - 77,522,511 (+)NCBI
Celera769,547,701 - 69,981,800 (+)NCBICelera
Cytogenetic Map7q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (EXP,ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-D-glucosamine  (ISO)
bisphenol A  (EXP)
cadmium sulfide  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cylindrospermopsin  (ISO)
D-glucose  (ISO)
dicrotophos  (ISO)
divanadium pentaoxide  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
glucose  (ISO)
hexadecanoic acid  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (EXP)
N,N-diethyl-m-toluamide  (EXP)
nickel atom  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
pirinixic acid  (ISO)
quercetin  (ISO)
silicon dioxide  (ISO)
sodium fluoride  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrion  (IEA)
nucleolus  (IDA,IEA,ISO)
nucleus  (IBA)

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:15057822   PMID:15489334   PMID:15632090   PMID:16641100   PMID:18614015   PMID:22028674   PMID:26668325   PMID:29953904   PMID:30977043   PMID:32114118   PMID:32585243  


Genomics

Comparative Map Data
Oxr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2772,528,782 - 72,965,666 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl772,528,786 - 72,965,666 (+)Ensembl
Rnor_6.0780,351,774 - 80,788,094 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl780,351,774 - 80,788,094 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0780,377,737 - 80,579,283 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0780,737,306 - 80,812,054 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4777,427,877 - 77,501,800 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1777,486,043 - 77,522,511 (+)NCBI
Celera769,547,701 - 69,981,800 (+)NCBICelera
Cytogenetic Map7q31NCBI
OXR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8106,270,144 - 106,752,694 (+)EnsemblGRCh38hg38GRCh38
GRCh388106,270,178 - 106,752,694 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh378107,282,406 - 107,764,922 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368107,739,270 - 107,834,097 (+)NCBINCBI36hg18NCBI36
Build 348107,739,269 - 107,832,861NCBI
Celera8103,469,771 - 103,951,905 (+)NCBI
Cytogenetic Map8q23.1NCBI
HuRef8102,604,276 - 103,085,972 (+)NCBIHuRef
CHM1_18107,322,938 - 107,805,369 (+)NCBICHM1_1
Oxr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391541,310,745 - 41,724,447 (+)NCBIGRCm39mm39
GRCm39 Ensembl1541,310,878 - 41,724,444 (+)Ensembl
GRCm381541,447,482 - 41,861,051 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1541,447,482 - 41,861,048 (+)EnsemblGRCm38mm10GRCm38
MGSCv371541,279,028 - 41,692,594 (+)NCBIGRCm37mm9NCBIm37
MGSCv361541,619,589 - 41,691,122 (+)NCBImm8
Celera1541,930,186 - 42,359,188 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
Oxr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541729,605,916 - 29,875,041 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541729,605,962 - 29,875,041 (+)NCBIChiLan1.0ChiLan1.0
OXR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18105,143,466 - 105,539,556 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8105,143,466 - 105,685,965 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08102,904,139 - 103,392,971 (+)NCBIMhudiblu_PPA_v0panPan3
OXR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1137,220,959 - 7,580,881 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl137,220,958 - 7,579,473 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha137,227,582 - 7,586,858 (+)NCBI
ROS_Cfam_1.0137,475,594 - 7,841,407 (+)NCBI
UMICH_Zoey_3.1137,236,654 - 7,595,837 (+)NCBI
UNSW_CanFamBas_1.0137,356,780 - 7,716,425 (+)NCBI
UU_Cfam_GSD_1.0137,432,915 - 7,792,934 (+)NCBI
Oxr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530330,308,050 - 30,711,154 (-)NCBI
SpeTri2.0NW_00493647037,734,149 - 38,137,252 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OXR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl430,734,514 - 31,400,997 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1430,735,844 - 31,254,952 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2433,378,196 - 33,881,792 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OXR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18101,059,060 - 101,534,283 (+)NCBI
ChlSab1.1 Ensembl8101,361,828 - 101,535,932 (+)Ensembl
Vero_WHO_p1.0NW_02366603939,049,904 - 39,517,807 (-)NCBI
Oxr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476322,008,477 - 22,344,330 (+)NCBI

Position Markers
D7Rat204  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,781,332 - 72,781,484 (+)MAPPERmRatBN7.2
Rnor_6.0780,604,644 - 80,604,795NCBIRnor6.0
Rnor_5.0780,628,808 - 80,628,959UniSTSRnor5.0
RGSC_v3.4777,316,213 - 77,316,365RGDRGSC3.4
RGSC_v3.4777,316,214 - 77,316,365UniSTSRGSC3.4
RGSC_v3.1777,336,943 - 77,337,095RGD
Celera769,797,984 - 69,798,135UniSTS
SHRSP x BN Map746.7RGD
SHRSP x BN Map746.7UniSTS
Cytogenetic Map7q31UniSTS
RH127323  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,964,873 - 72,965,062 (+)MAPPERmRatBN7.2
Rnor_6.0780,787,302 - 80,787,490NCBIRnor6.0
Rnor_5.0780,811,262 - 80,811,450UniSTSRnor5.0
RGSC_v3.4777,501,572 - 77,501,760UniSTSRGSC3.4
Celera769,981,008 - 69,981,196UniSTS
RH 3.4 Map7619.3UniSTS
Cytogenetic Map7q31UniSTS
AW534082  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,755,009 - 72,755,181 (+)MAPPERmRatBN7.2
Rnor_6.0780,578,097 - 80,578,268NCBIRnor6.0
Rnor_5.0780,602,261 - 80,602,432UniSTSRnor5.0
RGSC_v3.4777,289,892 - 77,290,063UniSTSRGSC3.4
Celera769,771,662 - 69,771,833UniSTS
RH 3.4 Map7634.3UniSTS
Cytogenetic Map7q31UniSTS
RH136710  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,793,030 - 72,793,196 (+)MAPPERmRatBN7.2
Rnor_6.0780,616,340 - 80,616,505NCBIRnor6.0
Rnor_5.0780,640,504 - 80,640,669UniSTSRnor5.0
RGSC_v3.4777,327,910 - 77,328,075UniSTSRGSC3.4
Celera769,809,678 - 69,809,843UniSTS
Cytogenetic Map7q31UniSTS
RH142515  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,950,703 - 72,950,835 (+)MAPPERmRatBN7.2
Rnor_6.0780,773,133 - 80,773,264NCBIRnor6.0
Rnor_5.0780,797,093 - 80,797,224UniSTSRnor5.0
RGSC_v3.4777,487,403 - 77,487,534UniSTSRGSC3.4
Celera769,966,879 - 69,967,010UniSTS
RH 3.4 Map7636.5UniSTS
Cytogenetic Map7q31UniSTS
AW531521  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,708,618 - 72,708,777 (+)MAPPERmRatBN7.2
Rnor_6.0780,532,808 - 80,532,966NCBIRnor6.0
Rnor_5.0780,556,871 - 80,557,029UniSTSRnor5.0
RGSC_v3.4777,240,502 - 77,240,660UniSTSRGSC3.4
Celera769,727,106 - 69,727,264UniSTS
RH 3.4 Map7620.3UniSTS
Cytogenetic Map7q31UniSTS
BI301964  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,963,283 - 72,963,471 (+)MAPPERmRatBN7.2
Rnor_6.0780,785,712 - 80,785,899NCBIRnor6.0
Rnor_5.0780,809,672 - 80,809,859UniSTSRnor5.0
RGSC_v3.4777,499,982 - 77,500,169UniSTSRGSC3.4
Celera769,979,418 - 69,979,605UniSTS
RH 3.4 Map7637.2UniSTS
Cytogenetic Map7q31UniSTS
BE120324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,964,889 - 72,965,040 (+)MAPPERmRatBN7.2
Rnor_6.0780,787,318 - 80,787,468NCBIRnor6.0
Rnor_5.0780,811,278 - 80,811,428UniSTSRnor5.0
RGSC_v3.4777,501,588 - 77,501,738UniSTSRGSC3.4
Celera769,981,024 - 69,981,174UniSTS
RH 3.4 Map7635.7UniSTS
Cytogenetic Map7q31UniSTS
BE108077  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,598,873 - 72,599,074 (+)MAPPERmRatBN7.2
Rnor_6.0780,422,424 - 80,422,624NCBIRnor6.0
Rnor_5.0780,448,387 - 80,448,587UniSTSRnor5.0
RGSC_v3.4777,129,007 - 77,129,207UniSTSRGSC3.4
Celera769,617,794 - 69,617,994UniSTS
RH 3.4 Map7621.4UniSTS
Cytogenetic Map7q31UniSTS
AI045087  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,955,355 - 72,956,371 (+)MAPPERmRatBN7.2
Rnor_6.0780,777,786 - 80,778,801NCBIRnor6.0
Rnor_5.0780,801,746 - 80,802,761UniSTSRnor5.0
RGSC_v3.4777,492,056 - 77,493,071UniSTSRGSC3.4
Celera769,971,531 - 69,972,546UniSTS
RH 3.4 Map7634.7UniSTS
Cytogenetic Map7q31UniSTS
BF407102  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,963,809 - 72,963,987 (+)MAPPERmRatBN7.2
Rnor_6.0780,786,238 - 80,786,415NCBIRnor6.0
Rnor_5.0780,810,198 - 80,810,375UniSTSRnor5.0
RGSC_v3.4777,500,508 - 77,500,685UniSTSRGSC3.4
Celera769,979,944 - 69,980,121UniSTS
RH 3.4 Map7634.7UniSTS
Cytogenetic Map7q31UniSTS
AI231426  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2772,964,153 - 72,964,347 (+)MAPPERmRatBN7.2
Rnor_6.0780,786,582 - 80,786,775NCBIRnor6.0
Rnor_5.0780,810,542 - 80,810,735UniSTSRnor5.0
RGSC_v3.4777,500,852 - 77,501,045UniSTSRGSC3.4
Celera769,980,288 - 69,980,481UniSTS
RH 3.4 Map7634.3UniSTS
Cytogenetic Map7q31UniSTS
AU048510  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera769,966,307 - 69,966,473UniSTS
Cytogenetic Map7q31UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1185
Count of miRNA genes:254
Interacting mature miRNAs:300
Transcripts:ENSRNOT00000010754, ENSRNOT00000010856, ENSRNOT00000010858
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001197332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001197907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_057153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF333986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP503055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DY318631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM082064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM123427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000078354   ⟹   ENSRNOP00000075440
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl772,891,390 - 72,965,666 (+)Ensembl
Rnor_6.0 Ensembl780,713,373 - 80,788,094 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079962   ⟹   ENSRNOP00000074353
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl780,750,725 - 80,786,340 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081948   ⟹   ENSRNOP00000074393
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl772,528,786 - 72,965,666 (+)Ensembl
Rnor_6.0 Ensembl780,351,774 - 80,788,094 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084940   ⟹   ENSRNOP00000070768
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl772,730,820 - 72,965,666 (+)Ensembl
Rnor_6.0 Ensembl780,625,010 - 80,788,093 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091355   ⟹   ENSRNOP00000070910
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl772,891,334 - 72,965,666 (+)Ensembl
Rnor_6.0 Ensembl780,713,321 - 80,786,340 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096357   ⟹   ENSRNOP00000085614
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl772,534,529 - 72,965,666 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098283   ⟹   ENSRNOP00000095211
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl772,850,428 - 72,965,666 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099739   ⟹   ENSRNOP00000077275
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl772,902,292 - 72,965,666 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106445   ⟹   ENSRNOP00000082079
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl772,528,786 - 72,965,666 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107921   ⟹   ENSRNOP00000092426
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl772,891,813 - 72,965,666 (+)Ensembl
RefSeq Acc Id: NM_001197332   ⟹   NP_001184261
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,928,661 - 72,965,666 (+)NCBI
Rnor_6.0780,750,609 - 80,788,094 (+)NCBI
Rnor_5.0780,737,306 - 80,812,054 (+)NCBI
Celera769,944,953 - 69,981,800 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001197907   ⟹   NP_001184836
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,528,786 - 72,965,666 (+)NCBI
Rnor_6.0780,351,774 - 80,788,094 (+)NCBI
Rnor_5.0780,377,737 - 80,579,283 (+)NCBI
Rnor_5.0780,737,306 - 80,812,054 (+)NCBI
Celera769,547,701 - 69,981,800 (+)NCBI
Sequence:
RefSeq Acc Id: NM_057153   ⟹   NP_476494
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,891,390 - 72,965,666 (+)NCBI
Rnor_6.0780,713,373 - 80,788,094 (+)NCBI
Rnor_5.0780,737,306 - 80,812,054 (+)NCBI
RGSC_v3.4777,427,877 - 77,501,800 (+)RGD
Celera769,907,896 - 69,981,800 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594617   ⟹   XP_017450106
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,528,782 - 72,965,666 (+)NCBI
Rnor_6.0780,351,779 - 80,788,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594620   ⟹   XP_017450109
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,731,073 - 72,965,666 (+)NCBI
Rnor_6.0780,555,024 - 80,788,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594621   ⟹   XP_017450110
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,850,627 - 72,965,666 (+)NCBI
Rnor_6.0780,671,748 - 80,788,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594623   ⟹   XP_017450112
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,892,006 - 72,965,666 (+)NCBI
Rnor_6.0780,713,912 - 80,788,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594624   ⟹   XP_017450113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,891,174 - 72,965,666 (+)NCBI
Rnor_6.0780,713,165 - 80,788,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594625   ⟹   XP_017450114
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,927,932 - 72,965,666 (+)NCBI
Rnor_6.0780,748,917 - 80,788,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039078299   ⟹   XP_038934227
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,528,791 - 72,965,666 (+)NCBI
RefSeq Acc Id: XM_039078301   ⟹   XP_038934229
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,891,880 - 72,965,666 (+)NCBI
RefSeq Acc Id: XM_039078302   ⟹   XP_038934230
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,891,195 - 72,965,666 (+)NCBI
RefSeq Acc Id: XM_039078303   ⟹   XP_038934231
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2772,731,073 - 72,955,432 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_476494   ⟸   NM_057153
- Peptide Label: isoform 2
- UniProtKB: Q4V8B0 (UniProtKB/Swiss-Prot),   A0A0G2KAL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001184836   ⟸   NM_001197907
- Peptide Label: isoform 1
- UniProtKB: A0A0G2K7Y2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001184261   ⟸   NM_001197332
- Peptide Label: isoform 3
- UniProtKB: Q4V8B0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017450106   ⟸   XM_017594617
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450109   ⟸   XM_017594620
- Peptide Label: isoform X4
- UniProtKB: Q4V8B0 (UniProtKB/Swiss-Prot),   A0A0G2KAL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450110   ⟸   XM_017594621
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017450113   ⟸   XM_017594624
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017450112   ⟸   XM_017594623
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017450114   ⟸   XM_017594625
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSRNOP00000070768   ⟸   ENSRNOT00000084940
RefSeq Acc Id: ENSRNOP00000074353   ⟸   ENSRNOT00000079962
RefSeq Acc Id: ENSRNOP00000070910   ⟸   ENSRNOT00000091355
RefSeq Acc Id: ENSRNOP00000075440   ⟸   ENSRNOT00000078354
RefSeq Acc Id: ENSRNOP00000074393   ⟸   ENSRNOT00000081948
RefSeq Acc Id: XP_038934227   ⟸   XM_039078299
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038934231   ⟸   XM_039078303
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038934230   ⟸   XM_039078302
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038934229   ⟸   XM_039078301
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000082079   ⟸   ENSRNOT00000106445
RefSeq Acc Id: ENSRNOP00000085614   ⟸   ENSRNOT00000096357
RefSeq Acc Id: ENSRNOP00000095211   ⟸   ENSRNOT00000098283
RefSeq Acc Id: ENSRNOP00000092426   ⟸   ENSRNOT00000107921
RefSeq Acc Id: ENSRNOP00000077275   ⟸   ENSRNOT00000099739
Protein Domains
GRAM   LysM   TLDc

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695319
Promoter ID:EPDNEW_R5838
Type:initiation region
Name:Oxr1_1
Description:oxidation resistance 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5839  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0780,713,253 - 80,713,313EPDNEW
RGD ID:13695314
Promoter ID:EPDNEW_R5839
Type:initiation region
Name:Oxr1_2
Description:oxidation resistance 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5838  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0780,750,654 - 80,750,714EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621857 AgrOrtholog
Ensembl Genes ENSRNOG00000056487 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000070768 UniProtKB/TrEMBL
  ENSRNOP00000070910 UniProtKB/TrEMBL
  ENSRNOP00000074353 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000074393 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000075440 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078354 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000079962 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000081948 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000084940 UniProtKB/TrEMBL
  ENSRNOT00000091355 UniProtKB/TrEMBL
Gene3D-CATH 3.10.350.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7931847 IMAGE-MGC_LOAD
InterPro LysM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LysM_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TLDc_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:117520 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:188523 IMAGE-MGC_LOAD
NCBI Gene 117520 ENTREZGENE
Pfam LysM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TLD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Oxr1 PhenoGen
PROSITE LYSM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TLDC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LysM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TLDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JYS1_RAT UniProtKB/TrEMBL
  A0A0G2JZ50_RAT UniProtKB/TrEMBL
  A0A0G2K7Y2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2KAL4 ENTREZGENE, UniProtKB/TrEMBL
  OXR1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B2RYF9 UniProtKB/Swiss-Prot
  Q99MK0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Oxr1  oxidation resistance 1      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Oxr1  oxidation resistance 1      Symbol and Name status set to provisional 70820 PROVISIONAL