Pkhd1l1 (PKHD1 like 1) - Rat Genome Database

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Gene: Pkhd1l1 (PKHD1 like 1) Rattus norvegicus
Analyze
Symbol: Pkhd1l1
Name: PKHD1 like 1
RGD ID: 1310406
Description: Predicted to act upstream of or within sensory perception of sound. Predicted to be located in stereocilium coat and stereocilium tip. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness. Orthologous to human PKHD1L1 (PKHD1 like 1); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: fibrocystin L; fibrocystin-L; LOC314917; MGC124881; polycystic kidney and hepatic disease 1-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,505,063 - 77,679,994 (+)NCBIGRCr8
mRatBN7.2775,620,384 - 75,795,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,620,484 - 75,795,335 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx777,465,056 - 77,641,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0779,667,547 - 79,843,497 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0779,545,040 - 79,714,899 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0783,373,022 - 83,548,944 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,373,022 - 83,545,540 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0783,387,129 - 83,563,775 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4780,324,195 - 80,499,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1780,322,001 - 80,520,504 (+)NCBI
Celera772,604,222 - 72,765,134 (+)NCBICelera
Cytogenetic Map7q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:15632090   PMID:24586199  


Genomics

Comparative Map Data
Pkhd1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,505,063 - 77,679,994 (+)NCBIGRCr8
mRatBN7.2775,620,384 - 75,795,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,620,484 - 75,795,335 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx777,465,056 - 77,641,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0779,667,547 - 79,843,497 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0779,545,040 - 79,714,899 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0783,373,022 - 83,548,944 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,373,022 - 83,545,540 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0783,387,129 - 83,563,775 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4780,324,195 - 80,499,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1780,322,001 - 80,520,504 (+)NCBI
Celera772,604,222 - 72,765,134 (+)NCBICelera
Cytogenetic Map7q31NCBI
PKHD1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388109,362,461 - 109,537,207 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8109,362,461 - 109,537,207 (+)EnsemblGRCh38hg38GRCh38
GRCh378110,374,690 - 110,549,436 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368110,443,882 - 110,612,676 (+)NCBINCBI36Build 36hg18NCBI36
Build 348110,443,881 - 110,611,740NCBI
Celera8106,562,401 - 106,730,887 (+)NCBICelera
Cytogenetic Map8q23.1-q23.2NCBI
HuRef8105,696,732 - 105,865,477 (+)NCBIHuRef
CHM1_18110,414,966 - 110,583,773 (+)NCBICHM1_1
T2T-CHM13v2.08110,491,005 - 110,665,782 (+)NCBIT2T-CHM13v2.0
Pkhd1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391544,320,792 - 44,464,772 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1544,320,890 - 44,464,765 (+)EnsemblGRCm39 Ensembl
GRCm381544,457,396 - 44,601,376 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1544,457,494 - 44,601,369 (+)EnsemblGRCm38mm10GRCm38
MGSCv371544,289,099 - 44,432,716 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361544,287,627 - 44,431,244 (+)NCBIMGSCv36mm8
Celera1544,922,570 - 45,056,697 (+)NCBICelera
Cytogenetic Map15B3.2NCBI
cM Map1516.91NCBI
Pkhd1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541716,776,731 - 16,922,789 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541716,776,674 - 16,923,058 (+)NCBIChiLan1.0ChiLan1.0
PKHD1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27126,738,261 - 126,903,597 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18102,259,302 - 102,424,587 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08106,012,498 - 106,180,653 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18108,158,018 - 108,325,730 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8108,158,087 - 108,322,665 (+)Ensemblpanpan1.1panPan2
PKHD1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1139,925,047 - 10,073,054 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl139,926,156 - 10,070,253 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha139,915,984 - 10,063,709 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01310,207,124 - 10,354,752 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1310,207,185 - 10,352,194 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1139,948,489 - 10,096,179 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01310,065,464 - 10,213,211 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01310,155,024 - 10,302,902 (+)NCBIUU_Cfam_GSD_1.0
Pkhd1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530328,058,700 - 28,198,415 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647035,484,995 - 35,624,465 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647035,484,857 - 35,624,504 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKHD1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl428,025,587 - 28,176,361 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1428,023,448 - 28,176,331 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2430,266,239 - 30,406,476 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PKHD1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18104,072,701 - 104,230,809 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8104,073,327 - 104,230,960 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603936,343,430 - 36,502,489 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pkhd1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247638,459,661 - 8,608,838 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247638,459,642 - 8,610,164 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pkhd1l1
1251 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:299
Count of miRNA genes:186
Interacting mature miRNAs:218
Transcripts:ENSRNOT00000005958, ENSRNOT00000057146
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 112 91 90 59 25 59 6 218 97 92 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001034931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI030678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF551112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ196166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB713515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB789394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK600919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DY546293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EV777124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM096644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM100521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM106180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM120324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005958   ⟹   ENSRNOP00000005958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl775,620,484 - 75,795,333 (+)Ensembl
Rnor_6.0 Ensembl783,373,080 - 83,545,540 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000057146   ⟹   ENSRNOP00000053974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl775,620,484 - 75,674,977 (+)Ensembl
Rnor_6.0 Ensembl783,373,022 - 83,427,435 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100813   ⟹   ENSRNOP00000092223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl775,620,484 - 75,795,335 (+)Ensembl
RefSeq Acc Id: NM_001034931   ⟹   NP_001030103
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,505,152 - 77,679,994 (+)NCBI
mRatBN7.2775,620,484 - 75,795,333 (+)NCBI
Rnor_6.0783,373,022 - 83,548,944 (+)NCBI
Rnor_5.0783,387,129 - 83,563,775 (+)NCBI
RGSC_v3.4780,324,195 - 80,499,655 (+)RGD
Celera772,604,222 - 72,765,134 (+)RGD
Sequence:
RefSeq Acc Id: XM_039079161   ⟹   XP_038935089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,505,063 - 77,679,994 (+)NCBI
mRatBN7.2775,620,384 - 75,795,335 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001030103 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935089 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05758 (Get FASTA)   NCBI Sequence Viewer  
  EDM16306 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005958.8
  ENSRNOP00000053974.5
  ENSRNOP00000092223.1
RefSeq Acc Id: NP_001030103   ⟸   NM_001034931
- Peptide Label: precursor
- UniProtKB: D4A9R2 (UniProtKB/TrEMBL),   A0A8I6AHF3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000053974   ⟸   ENSRNOT00000057146
Ensembl Acc Id: ENSRNOP00000005958   ⟸   ENSRNOT00000005958
RefSeq Acc Id: XP_038935089   ⟸   XM_039079161
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHF3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092223   ⟸   ENSRNOT00000100813
Protein Domains
G8   PA14

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695334
Promoter ID:EPDNEW_R5844
Type:initiation region
Name:Pkhd1l1_1
Description:PKHD1 like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0783,372,987 - 83,373,047EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310406 AgrOrtholog
BioCyc Gene G2FUF-33479 BioCyc
Ensembl Genes ENSRNOG00000004398 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005958.8 UniProtKB/TrEMBL
  ENSRNOT00000057146.6 UniProtKB/TrEMBL
  ENSRNOT00000100813.1 UniProtKB/TrEMBL
Gene3D-CATH 2.160.20.10 UniProtKB/TrEMBL
  2.60.120.1560 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  2.60.40.420 UniProtKB/TrEMBL
InterPro Cupredoxin UniProtKB/TrEMBL
  Fibrocystin-related UniProtKB/TrEMBL
  G8_domain UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_TIG_rcpt UniProtKB/TrEMBL
  PA14 UniProtKB/TrEMBL
  PA14/GLEYA UniProtKB/TrEMBL
  PbH1 UniProtKB/TrEMBL
  Pectin_lyas_fold UniProtKB/TrEMBL
  Pectin_lyase_fold/virulence UniProtKB/TrEMBL
KEGG Report rno:314917 UniProtKB/TrEMBL
NCBI Gene 314917 ENTREZGENE
PANTHER FIBROCYSTIN-L UniProtKB/TrEMBL
  POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 UniProtKB/TrEMBL
Pfam PA14 UniProtKB/TrEMBL
  PF10162 UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
PhenoGen Pkhd1l1 PhenoGen
PROSITE PA14 UniProtKB/TrEMBL
  PS51484 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004398 RatGTEx
SMART IPT UniProtKB/TrEMBL
  PA14 UniProtKB/TrEMBL
  PbH1 UniProtKB/TrEMBL
  SM01225 UniProtKB/TrEMBL
Superfamily-SCOP Anthrax protective antigen UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  SSF49503 UniProtKB/TrEMBL
  SSF51126 UniProtKB/TrEMBL
UniProt A0A8I6AHF3 ENTREZGENE, UniProtKB/TrEMBL
  D4A9R2 ENTREZGENE, UniProtKB/TrEMBL
  E9PSK6_RAT UniProtKB/TrEMBL
  Q3KRE5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-27 Pkhd1l1  PKHD1 like 1  Pkhd1l1  polycystic kidney and hepatic disease 1-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Pkhd1l1  polycystic kidney and hepatic disease 1-like 1  Pkhd1l1_predicted  polycystic kidney and hepatic disease 1-like 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Pkhd1l1_predicted  polycystic kidney and hepatic disease 1-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED