Sybu (syntabulin) - Rat Genome Database

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Gene: Sybu (syntabulin) Rattus norvegicus
Analyze
Symbol: Sybu
Name: syntabulin
RGD ID: 1564335
Description: Enables microtubule binding activity. Involved in several processes, including axonal transport; positive regulation of insulin secretion involved in cellular response to glucose stimulus; and regulation of synaptic activity. Acts upstream of or within regulation of insulin secretion involved in cellular response to glucose stimulus. Located in dense body; microtubule; and vesicle. Orthologous to human SYBU (syntabulin); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Golgi-localized protein; Golsyn; LOC500865; Ocsyn; RGD1564335; similar to RIKEN cDNA 5730410E15 gene; syntabulin (syntaxin-interacting)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2775,847,000 - 75,948,919 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,847,003 - 75,948,828 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0783,600,614 - 83,670,121 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,600,617 - 83,670,356 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0783,615,445 - 83,685,901 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4780,551,448 - 80,636,458 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera772,816,778 - 72,887,484 (-)NCBICelera
Cytogenetic Map7q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dichloroacetic acid  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
gallic acid  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (ISO)
paraquat  (EXP)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sunitinib  (ISO)
T-2 toxin  (EXP,ISO)
tamoxifen  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
tributylstannane  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Syntabulin-kinesin-1 family member 5B-mediated axonal transport contributes to activity-dependent presynaptic assembly. Cai Q, etal., J Neurosci. 2007 Jul 4;27(27):7284-96.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Regulation of mitochondrial transport in neurons. Lin MY and Sheng ZH, Exp Cell Res. 2015 May 15;334(1):35-44. doi: 10.1016/j.yexcr.2015.01.004. Epub 2015 Jan 19.
4. KIF5B motor adaptor syntabulin maintains synaptic transmission in sympathetic neurons. Ma H, etal., J Neurosci. 2009 Oct 14;29(41):13019-29. doi: 10.1523/JNEUROSCI.2517-09.2009.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. The microtubule associated protein syntabulin is required for glucose-stimulated and cAMP-potentiated insulin secretion. Ying Y, etal., FEBS Lett. 2012 Oct 19;586(20):3674-80. doi: 10.1016/j.febslet.2012.08.025. Epub 2012 Sep 6.
Additional References at PubMed
PMID:15459722   PMID:17045436   PMID:26868290  


Genomics

Comparative Map Data
Sybu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2775,847,000 - 75,948,919 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,847,003 - 75,948,828 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0783,600,614 - 83,670,121 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,600,617 - 83,670,356 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0783,615,445 - 83,685,901 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4780,551,448 - 80,636,458 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera772,816,778 - 72,887,484 (-)NCBICelera
Cytogenetic Map7q31NCBI
SYBU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388109,573,978 - 109,691,600 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl8109,573,978 - 109,691,791 (-)EnsemblGRCh38hg38GRCh38
GRCh378110,586,207 - 110,703,829 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368110,655,581 - 110,773,196 (-)NCBINCBI36Build 36hg18NCBI36
Celera8106,773,801 - 106,891,437 (-)NCBICelera
Cytogenetic Map8q23.2NCBI
HuRef8105,908,387 - 106,025,974 (-)NCBIHuRef
CHM1_18110,626,649 - 110,744,269 (-)NCBICHM1_1
T2T-CHM13v2.08110,702,563 - 110,820,184 (-)NCBIT2T-CHM13v2.0
Sybu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391544,535,252 - 44,651,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1544,535,252 - 44,651,459 (-)EnsemblGRCm39 Ensembl
GRCm381544,671,856 - 44,788,070 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1544,671,856 - 44,788,063 (-)EnsemblGRCm38mm10GRCm38
MGSCv371544,503,402 - 44,619,609 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361544,501,930 - 44,618,137 (-)NCBIMGSCv36mm8
Celera1545,123,907 - 45,239,526 (-)NCBICelera
Cytogenetic Map15B3.2NCBI
Sybu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541716,971,394 - 17,036,940 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541716,971,394 - 17,036,925 (-)NCBIChiLan1.0ChiLan1.0
SYBU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18108,368,117 - 108,436,570 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8108,368,117 - 108,483,927 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08106,223,046 - 106,340,418 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SYBU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11310,110,183 - 10,179,514 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1310,111,091 - 10,180,056 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1310,100,830 - 10,209,568 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01310,391,898 - 10,465,693 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1310,391,905 - 10,501,668 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11310,133,302 - 10,242,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01310,250,505 - 10,324,527 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01310,340,031 - 10,448,908 (-)NCBIUU_Cfam_GSD_1.0
Sybu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530327,906,164 - 28,012,831 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647035,332,452 - 35,438,204 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647035,332,243 - 35,439,095 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYBU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl427,901,097 - 27,974,660 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1427,899,264 - 27,975,389 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2430,103,738 - 30,217,060 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYBU
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18104,274,092 - 104,390,051 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8104,273,217 - 104,344,348 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603936,184,560 - 36,300,374 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sybu
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247638,657,285 - 8,766,586 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247638,657,276 - 8,742,161 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sybu
589 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:474
Count of miRNA genes:218
Interacting mature miRNAs:272
Transcripts:ENSRNOT00000005584, ENSRNOT00000073442
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat

Markers in Region
D7Uwm14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2775,911,804 - 75,911,927 (+)MAPPERmRatBN7.2
Rnor_6.0783,664,426 - 83,664,546NCBIRnor6.0
Rnor_5.0783,680,214 - 83,680,334UniSTSRnor5.0
RGSC_v3.4780,630,781 - 80,630,902RGDRGSC3.4
RGSC_v3.4780,630,782 - 80,630,902UniSTSRGSC3.4
Celera772,881,788 - 72,881,909UniSTS
Cytogenetic Map7q31UniSTS
BE113572  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2775,915,780 - 75,915,955 (+)MAPPERmRatBN7.2
Rnor_6.0783,668,400 - 83,668,574NCBIRnor6.0
Rnor_5.0783,684,188 - 83,684,362UniSTSRnor5.0
RGSC_v3.4780,634,756 - 80,634,930UniSTSRGSC3.4
Celera772,885,763 - 72,885,937UniSTS
RH 3.4 Map7525.5UniSTS
Cytogenetic Map7q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 68 1
Low 3 19 34 20 12 20 6 9 6 20 27 11 6
Below cutoff 18 17 15 7 15 2 2 13 13 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006226063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005584   ⟹   ENSRNOP00000005584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl775,847,003 - 75,948,587 (-)Ensembl
Rnor_6.0 Ensembl783,600,617 - 83,670,356 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096897   ⟹   ENSRNOP00000078572
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl775,847,003 - 75,948,538 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105901   ⟹   ENSRNOP00000097171
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl775,847,003 - 75,948,587 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111430   ⟹   ENSRNOP00000085889
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl775,847,003 - 75,948,828 (-)Ensembl
RefSeq Acc Id: XM_006241616   ⟹   XP_006241678
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,917,512 (-)NCBI
Rnor_6.0783,600,614 - 83,670,121 (-)NCBI
Rnor_5.0783,615,445 - 83,685,901 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241617   ⟹   XP_006241679
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,917,512 (-)NCBI
Rnor_6.0783,600,614 - 83,670,121 (-)NCBI
Rnor_5.0783,615,445 - 83,685,901 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080172   ⟹   XP_038936100
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,915,534 (-)NCBI
RefSeq Acc Id: XM_039080173   ⟹   XP_038936101
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,915,541 (-)NCBI
RefSeq Acc Id: XM_039080174   ⟹   XP_038936102
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,913,869 (-)NCBI
RefSeq Acc Id: XM_039080175   ⟹   XP_038936103
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,948,919 (-)NCBI
RefSeq Acc Id: XM_039080176   ⟹   XP_038936104
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,917,512 (-)NCBI
RefSeq Acc Id: XM_039080177   ⟹   XP_038936105
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,913,869 (-)NCBI
RefSeq Acc Id: XM_039080178   ⟹   XP_038936106
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,886,505 (-)NCBI
RefSeq Acc Id: XM_039080180   ⟹   XP_038936108
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,886,507 (-)NCBI
RefSeq Acc Id: XM_039080181   ⟹   XP_038936109
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,886,829 (-)NCBI
RefSeq Acc Id: XM_039080182   ⟹   XP_038936110
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,886,507 (-)NCBI
RefSeq Acc Id: XM_039080183   ⟹   XP_038936111
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2775,847,000 - 75,886,507 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_006241679   ⟸   XM_006241617
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006241678   ⟸   XM_006241616
- Peptide Label: isoform X3
- UniProtKB: F1LUC0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005584   ⟸   ENSRNOT00000005584
RefSeq Acc Id: XP_038936103   ⟸   XM_039080175
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038936104   ⟸   XM_039080176
- Peptide Label: isoform X4
- UniProtKB: F1LUC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936101   ⟸   XM_039080173
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038936100   ⟸   XM_039080172
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AS68 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936105   ⟸   XM_039080177
- Peptide Label: isoform X4
- UniProtKB: F1LUC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936102   ⟸   XM_039080174
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038936109   ⟸   XM_039080181
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038936111   ⟸   XM_039080183
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038936110   ⟸   XM_039080182
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038936108   ⟸   XM_039080180
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038936106   ⟸   XM_039080178
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000078572   ⟸   ENSRNOT00000096897
RefSeq Acc Id: ENSRNOP00000097171   ⟸   ENSRNOT00000105901
RefSeq Acc Id: ENSRNOP00000085889   ⟸   ENSRNOT00000111430

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LUC0-F1-model_v2 AlphaFold F1LUC0 1-665 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564335 AgrOrtholog
BioCyc Gene G2FUF-33477 BioCyc
Ensembl Genes ENSRNOG00000004200 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005584 ENTREZGENE
  ENSRNOP00000005584.7 UniProtKB/TrEMBL
  ENSRNOP00000078572.1 UniProtKB/TrEMBL
  ENSRNOP00000085889 ENTREZGENE
  ENSRNOP00000085889.1 UniProtKB/TrEMBL
  ENSRNOP00000097171 ENTREZGENE
  ENSRNOP00000097171.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005584 ENTREZGENE
  ENSRNOT00000005584.9 UniProtKB/TrEMBL
  ENSRNOT00000096897.1 UniProtKB/TrEMBL
  ENSRNOT00000105901 ENTREZGENE
  ENSRNOT00000105901.1 UniProtKB/TrEMBL
  ENSRNOT00000111430 ENTREZGENE
  ENSRNOT00000111430.1 UniProtKB/TrEMBL
InterPro Syntabulin UniProtKB/TrEMBL
  Syntaphilin/Syntabulin UniProtKB/TrEMBL
KEGG Report rno:500865 UniProtKB/TrEMBL
NCBI Gene 500865 ENTREZGENE
PANTHER PTHR16208:SF4 UniProtKB/TrEMBL
Pfam Syntaphilin UniProtKB/TrEMBL
PhenoGen Sybu PhenoGen
UniProt A0A8I5ZLI6_RAT UniProtKB/TrEMBL
  A0A8I6A508_RAT UniProtKB/TrEMBL
  A0A8I6AS68 ENTREZGENE, UniProtKB/TrEMBL
  F1LUC0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-11 Sybu  syntabulin  Sybu  syntabulin (syntaxin-interacting)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-02 Sybu  syntabulin (syntaxin-interacting)  Golsyn  Golgi-localized protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Golsyn  Golgi-localized protein  RGD1564335_predicted  similar to RIKEN cDNA 5730410E15 gene (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564335_predicted  similar to RIKEN cDNA 5730410E15 gene (predicted)  LOC500865  similar to RIKEN cDNA 5730410E15 gene  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500865  similar to RIKEN cDNA 5730410E15 gene      Symbol and Name status set to provisional 70820 PROVISIONAL