Ndufb9 (NADH:ubiquinone oxidoreductase subunit B9) - Rat Genome Database

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Gene: Ndufb9 (NADH:ubiquinone oxidoreductase subunit B9) Rattus norvegicus
Analyze
Symbol: Ndufb9 (Ensembl: Rnf139)
Name: NADH:ubiquinone oxidoreductase subunit B9 (Ensembl:ring finger protein 139)
RGD ID: 1307114
Description: Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 24. Orthologous to human NDUFB9 (NADH:ubiquinone oxidoreductase subunit B9); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299954; NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2790,481,013 - 90,487,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl790,436,621 - 90,488,009 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx792,370,572 - 92,376,991 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0794,571,728 - 94,578,147 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0794,398,995 - 94,405,407 (+)NCBIRnor_WKY
Rnor_6.0798,813,062 - 98,819,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl798,813,040 - 98,819,452 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0799,411,587 - 99,417,933 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4795,949,322 - 95,955,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1795,983,544 - 95,989,916 (-)NCBI
Celera787,246,352 - 87,252,698 (+)NCBICelera
Cytogenetic Map7q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:12611891   PMID:12865426   PMID:14651853   PMID:18614015   PMID:23376485   PMID:27626371   PMID:31505169  


Genomics

Comparative Map Data
Ndufb9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2790,481,013 - 90,487,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl790,436,621 - 90,488,009 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx792,370,572 - 92,376,991 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0794,571,728 - 94,578,147 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0794,398,995 - 94,405,407 (+)NCBIRnor_WKY
Rnor_6.0798,813,062 - 98,819,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl798,813,040 - 98,819,452 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0799,411,587 - 99,417,933 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4795,949,322 - 95,955,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1795,983,544 - 95,989,916 (-)NCBI
Celera787,246,352 - 87,252,698 (+)NCBICelera
Cytogenetic Map7q33NCBI
NDUFB9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388124,539,123 - 124,549,979 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl8124,539,101 - 124,580,648 (+)EnsemblGRCh38hg38GRCh38
GRCh378125,551,364 - 125,562,220 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368125,620,524 - 125,631,408 (+)NCBINCBI36Build 36hg18NCBI36
Build 348125,620,535 - 125,631,399NCBI
Celera8121,739,460 - 121,750,342 (+)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8120,876,813 - 120,887,693 (+)NCBIHuRef
CHM1_18125,591,587 - 125,602,470 (+)NCBICHM1_1
T2T-CHM13v2.08125,672,139 - 125,682,993 (+)NCBIT2T-CHM13v2.0
Ndufb9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391558,805,650 - 58,811,365 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1558,805,605 - 58,811,337 (+)EnsemblGRCm39 Ensembl
GRCm381558,933,801 - 58,939,516 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,933,756 - 58,939,488 (+)EnsemblGRCm38mm10GRCm38
MGSCv371558,765,365 - 58,771,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361558,763,893 - 58,769,572 (+)NCBIMGSCv36mm8
Celera1560,463,602 - 60,469,281 (+)NCBICelera
Cytogenetic Map15D1NCBI
Ndufb9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555403,198,145 - 3,203,470 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555403,198,140 - 3,203,470 (+)NCBIChiLan1.0ChiLan1.0
NDUFB9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18123,975,910 - 123,986,781 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8123,975,910 - 123,986,781 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08121,223,857 - 121,234,743 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NDUFB9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11322,624,929 - 22,632,310 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1322,624,945 - 22,632,310 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1322,590,387 - 22,597,760 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01322,966,848 - 22,974,209 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1322,966,746 - 22,979,490 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11322,687,671 - 22,695,059 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01322,797,216 - 22,804,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01323,040,099 - 23,047,497 (+)NCBIUU_Cfam_GSD_1.0
Ndufb9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530315,692,060 - 15,697,553 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647023,118,164 - 23,123,749 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647023,118,162 - 23,123,648 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFB9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl415,105,305 - 15,113,550 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1415,105,305 - 15,113,281 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2415,761,858 - 15,769,836 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFB9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18119,103,300 - 119,113,440 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8119,102,917 - 119,113,950 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603921,072,813 - 21,082,905 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufb9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473530,659,030 - 30,667,372 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473530,660,652 - 30,667,395 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ndufb9
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:43
Count of miRNA genes:41
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000012616
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78022129993595843Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78022129994811326Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
10450828Scl79Serum cholesterol level QTL 793.50.001blood HDL cholesterol amount (VT:0000184)blood low density lipoprotein cholesterol level (CMO:0000053)789867376101773158Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 5 1
Medium 3 38 57 41 19 41 8 10 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC166927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000011891   ⟹   ENSRNOP00000067352
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl790,439,726 - 90,450,911 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000012616   ⟹   ENSRNOP00000012616
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl790,481,001 - 90,488,009 (+)Ensembl
Rnor_6.0 Ensembl798,813,040 - 98,819,452 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101966   ⟹   ENSRNOP00000084114
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl790,436,621 - 90,488,009 (+)Ensembl
RefSeq Acc Id: NM_001127294   ⟹   NP_001120766
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2790,481,013 - 90,487,360 (+)NCBI
Rnor_6.0798,813,062 - 98,819,408 (+)NCBI
Rnor_5.0799,411,587 - 99,417,933 (+)NCBI
RGSC_v3.4795,949,322 - 95,955,668 (-)RGD
Celera787,246,352 - 87,252,698 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001120766 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66927 (Get FASTA)   NCBI Sequence Viewer  
  AAI68767 (Get FASTA)   NCBI Sequence Viewer  
  EDM16208 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001120766   ⟸   NM_001127294
- UniProtKB: B2RYW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000012616   ⟸   ENSRNOT00000012616
RefSeq Acc Id: ENSRNOP00000084114   ⟸   ENSRNOT00000101966
RefSeq Acc Id: ENSRNOP00000067352   ⟸   ENSRNOT00000011891
Protein Domains
Complex1_LYR_dom

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYW3-F1-model_v2 AlphaFold B2RYW3 1-179 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695353
Promoter ID:EPDNEW_R5878
Type:multiple initiation site
Name:Ndufb9_1
Description:NADH:ubiquinone oxidoreductase subunit B9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0798,813,043 - 98,813,103EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307114 AgrOrtholog
BioCyc Gene G2FUF-33296 BioCyc
BioCyc Pathway PWY-3781 [aerobic respiration I (cytochrome c)] BioCyc
Ensembl Genes ENSRNOG00000008987 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000009364 Ensembl
Ensembl Protein ENSRNOP00000012616 ENTREZGENE
  ENSRNOP00000012616.4 UniProtKB/TrEMBL
  ENSRNOP00000084114.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012616 ENTREZGENE
  ENSRNOT00000012616.8 UniProtKB/TrEMBL
  ENSRNOT00000101966.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6919700 IMAGE-MGC_LOAD
InterPro Complex1_LYR UniProtKB/TrEMBL
  Complex1_LYR_NDUFB9_LYRM3 UniProtKB/TrEMBL
  NDUFB9 UniProtKB/TrEMBL
KEGG Report rno:299954 UniProtKB/TrEMBL
MGC_CLONE MGC:188916 IMAGE-MGC_LOAD
NCBI Gene 299954 ENTREZGENE
PANTHER PTHR12868 UniProtKB/TrEMBL
Pfam Complex1_LYR UniProtKB/TrEMBL
PhenoGen Ndufb9 PhenoGen
UniProt A0A8I6A1A8_RAT UniProtKB/TrEMBL
  B2RYW3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-17 Ndufb9  NADH:ubiquinone oxidoreductase subunit B9  Ndufb9  NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ndufb9  NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9   Ndufb9_predicted  NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ndufb9_predicted  NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED