Rims2 (regulating synaptic membrane exocytosis 2) - Rat Genome Database

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Gene: Rims2 (regulating synaptic membrane exocytosis 2) Rattus norvegicus
Analyze
Symbol: Rims2
Name: regulating synaptic membrane exocytosis 2
RGD ID: 620001
Description: Enables protein domain specific binding activity. Predicted to be involved in several processes, including modulation of chemical synaptic transmission; positive regulation of dendrite extension; and signal release. Predicted to act upstream of or within adenylate cyclase-modulating G protein-coupled receptor signaling pathway; maintenance of presynaptic active zone structure; and neurotransmitter secretion. Located in synapse. Part of protein-containing complex. Is active in photoreceptor ribbon synapse and presynaptic active zone cytoplasmic component. Orthologous to human RIMS2 (regulating synaptic membrane exocytosis 2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC103692905; Nim2; rab-3-interacting molecule 2; rab3-interacting molecule 2; regulating synaptic membrane exocytosis protein 2; regulating synaptic membrane exocytosis protein 2-like; RIM 2; Rim2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2770,248,104 - 70,759,134 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl770,243,872 - 70,757,491 (+)Ensembl
Rnor_6.0778,091,998 - 78,594,164 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl778,092,037 - 78,594,138 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0777,654,267 - 78,157,458 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4774,757,003 - 75,271,771 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1774,777,732 - 75,292,501 (+)NCBI
Celera767,304,674 - 67,811,355 (+)NCBICelera
Cytogenetic Map7q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Structural basis for a Munc13-1 homodimer to Munc13-1/RIM heterodimer switch. Lu J, etal., PLoS Biol. 2006 Jul;4(7):e192.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. RIM1alpha forms a protein scaffold for regulating neurotransmitter release at the active zone. Schoch S, etal., Nature 2002 Jan 17;415(6869):321-6.
8. Rim, a component of the presynaptic active zone and modulator of exocytosis, binds 14-3-3 through its N terminus. Sun L, etal., J Biol Chem 2003 Oct 3;278(40):38301-9. Epub 2003 Jul 18.
9. Genomic definition of RIM proteins: evolutionary amplification of a family of synaptic regulatory proteins( small star, filled ). Wang Y and Sudhof TC, Genomics 2003 Feb;81(2):126-37.
10. The RIM/NIM family of neuronal C2 domain proteins. Interactions with Rab3 and a new class of Src homology 3 domain proteins. Wang Y, etal., J Biol Chem 2000 Jun 30;275(26):20033-44.
11. Rim is a putative Rab3 effector in regulating synaptic-vesicle fusion. Wang Y, etal., Nature 1997 Aug 7;388(6642):593-8.
Additional References at PubMed
PMID:11056535   PMID:11598134   PMID:16216076   PMID:16641100   PMID:17124501   PMID:18570454   PMID:20452978   PMID:20674857   PMID:21241895   PMID:21262469   PMID:22120110   PMID:22753485  
PMID:23999003   PMID:25730884   PMID:27537483  


Genomics

Comparative Map Data
Rims2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2770,248,104 - 70,759,134 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl770,243,872 - 70,757,491 (+)Ensembl
Rnor_6.0778,091,998 - 78,594,164 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl778,092,037 - 78,594,138 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0777,654,267 - 78,157,458 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4774,757,003 - 75,271,771 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1774,777,732 - 75,292,501 (+)NCBI
Celera767,304,674 - 67,811,355 (+)NCBICelera
Cytogenetic Map7q31NCBI
RIMS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388103,500,610 - 104,256,094 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl8103,500,610 - 104,254,430 (+)EnsemblGRCh38hg38GRCh38
GRCh378104,512,838 - 105,268,322 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368104,582,152 - 105,334,627 (+)NCBINCBI36hg18NCBI36
Build 348104,900,675 - 105,333,929NCBI
Celera8100,699,462 - 101,452,122 (+)NCBI
Cytogenetic Map8q22.3NCBI
HuRef899,713,363 - 100,467,719 (+)NCBIHuRef
CHM1_18104,553,751 - 105,307,457 (+)NCBICHM1_1
T2T-CHM13v2.08104,628,208 - 105,383,642 (+)NCBI
Rims2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391539,061,681 - 39,547,768 (+)NCBIGRCm39mm39
GRCm39 Ensembl1539,061,656 - 39,547,768 (+)Ensembl
GRCm381539,198,286 - 39,684,372 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1539,198,261 - 39,684,372 (+)EnsemblGRCm38mm10GRCm38
MGSCv371539,029,878 - 39,513,486 (+)NCBIGRCm37mm9NCBIm37
MGSCv361539,028,406 - 39,512,014 (+)NCBImm8
Celera1539,686,119 - 40,171,702 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1515.45NCBI
Rims2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541727,728,428 - 28,128,877 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541727,748,090 - 28,131,431 (+)NCBIChiLan1.0ChiLan1.0
RIMS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18102,312,309 - 103,047,121 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v08100,156,403 - 100,894,128 (+)NCBIMhudiblu_PPA_v0panPan3
RIMS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1134,928,518 - 5,499,258 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl134,927,121 - 5,496,629 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha134,932,237 - 5,507,011 (+)NCBI
ROS_Cfam_1.0135,094,191 - 5,746,504 (+)NCBI
ROS_Cfam_1.0 Ensembl135,093,586 - 5,743,892 (+)Ensembl
UMICH_Zoey_3.1134,933,979 - 5,515,155 (+)NCBI
UNSW_CanFamBas_1.0135,051,869 - 5,634,682 (+)NCBI
UU_Cfam_GSD_1.0135,064,703 - 5,656,525 (+)NCBI
Rims2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530332,296,991 - 32,844,536 (-)NCBI
SpeTri2.0NW_00493647039,725,092 - 40,270,268 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIMS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl432,999,618 - 33,614,366 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1432,999,615 - 33,613,413 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2436,192,343 - 36,385,752 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RIMS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1898,354,271 - 99,097,457 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl898,354,131 - 99,097,577 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603941,473,614 - 42,248,636 (-)NCBIVero_WHO_p1.0
Rims2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476320,027,574 - 20,567,688 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462476320,027,601 - 20,567,288 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D7Got66  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2770,566,406 - 70,566,604 (+)MAPPERmRatBN7.2
Rnor_6.0778,401,732 - 78,401,929NCBIRnor6.0
Rnor_5.0777,846,554 - 77,846,751UniSTSRnor5.0
RGSC_v3.4775,078,690 - 75,078,888RGDRGSC3.4
RGSC_v3.4775,078,691 - 75,078,888UniSTSRGSC3.4
RGSC_v3.1775,099,421 - 75,099,618RGD
Celera767,620,521 - 67,620,718UniSTS
RH 3.4 Map7627.2UniSTS
RH 3.4 Map7627.2RGD
RH 2.0 Map7469.1RGD
Cytogenetic Map7q22UniSTS
D6Got190  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2770,279,534 - 70,279,763 (+)MAPPERmRatBN7.2
Rnor_6.0778,123,248 - 78,123,476NCBIRnor6.0
Rnor_5.0778,125,896 - 78,126,124UniSTSRnor5.0
RGSC_v3.4774,788,098 - 74,788,327RGDRGSC3.4
RGSC_v3.4774,788,099 - 74,788,327UniSTSRGSC3.4
RGSC_v3.1774,808,829 - 74,809,057RGD
Celera767,335,712 - 67,335,940UniSTS
RH 3.4 Map7630.4UniSTS
RH 3.4 Map7630.4RGD
RH 2.0 Map7469.6RGD
Cytogenetic Map7q22UniSTS
D8S1580  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2770,756,364 - 70,756,602 (+)MAPPERmRatBN7.2
Rnor_6.0778,674,554 - 78,674,791NCBIRnor6.0
Rnor_6.0778,591,395 - 78,591,632NCBIRnor6.0
Rnor_5.0777,656,798 - 77,657,036NCBIRnor5.0
RGSC_v3.4775,270,645 - 75,270,882UniSTSRGSC3.4
Celera767,810,229 - 67,810,466UniSTS
Cytogenetic Map7q22UniSTS
AU047278  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2770,566,492 - 70,566,658 (+)MAPPERmRatBN7.2
Rnor_6.0778,401,818 - 78,401,983NCBIRnor6.0
Rnor_5.0777,846,500 - 77,846,665UniSTSRnor5.0
RGSC_v3.4775,078,777 - 75,078,942UniSTSRGSC3.4
Celera767,620,607 - 67,620,772UniSTS
Cytogenetic Map7q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2008
Count of miRNA genes:292
Interacting mature miRNAs:387
Transcripts:ENSRNOT00000006393, ENSRNOT00000006474, ENSRNOT00000039984, ENSRNOT00000041618, ENSRNOT00000043079, ENSRNOT00000044843, ENSRNOT00000050753
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 72 3
Low 2 27 23 7 10 7 1 1 2 35 38 10 1
Below cutoff 1 16 27 27 9 27 7 9 1 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF199322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF548738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000006393   ⟹   ENSRNOP00000006393
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl770,722,363 - 70,757,491 (+)Ensembl
Rnor_6.0 Ensembl778,558,701 - 78,592,521 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000039984   ⟹   ENSRNOP00000047914
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl770,248,423 - 70,757,491 (+)Ensembl
Rnor_6.0 Ensembl778,131,232 - 78,594,138 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000043079   ⟹   ENSRNOP00000045165
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl770,351,357 - 70,757,491 (+)Ensembl
Rnor_6.0 Ensembl778,188,912 - 78,591,601 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000050753   ⟹   ENSRNOP00000043010
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl770,248,423 - 70,757,491 (+)Ensembl
Rnor_6.0 Ensembl778,092,037 - 78,592,521 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106052   ⟹   ENSRNOP00000087824
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl770,243,872 - 70,757,491 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112311   ⟹   ENSRNOP00000083681
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl770,248,423 - 70,757,491 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116297   ⟹   ENSRNOP00000079853
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl770,243,872 - 70,757,491 (+)Ensembl
RefSeq Acc Id: NM_053945   ⟹   NP_446397
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,423 - 70,757,491 (+)NCBI
Rnor_6.0778,092,037 - 78,592,521 (+)NCBI
Rnor_5.0777,654,267 - 78,157,458 (-)NCBI
RGSC_v3.4774,757,003 - 75,271,771 (+)RGD
Celera767,304,674 - 67,811,355 (+)RGD
Sequence:
RefSeq Acc Id: NM_145881   ⟹   NP_665888
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,722,363 - 70,757,491 (+)NCBI
Rnor_6.0778,558,701 - 78,592,521 (+)NCBI
Rnor_5.0777,654,267 - 78,157,458 (-)NCBI
RGSC_v3.4774,757,003 - 75,271,771 (+)RGD
Celera767,777,082 - 67,811,355 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241591   ⟹   XP_006241653
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
Rnor_6.0778,092,088 - 78,594,164 (+)NCBI
Rnor_5.0777,654,267 - 78,157,458 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241592   ⟹   XP_006241654
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
Rnor_6.0778,092,088 - 78,594,164 (+)NCBI
Rnor_5.0777,654,267 - 78,157,458 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241593   ⟹   XP_006241655
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,423 - 70,757,276 (+)NCBI
Rnor_6.0778,092,037 - 78,592,227 (+)NCBI
Rnor_5.0777,654,267 - 78,157,458 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241594   ⟹   XP_006241656
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,423 - 70,757,276 (+)NCBI
Rnor_6.0778,092,037 - 78,592,227 (+)NCBI
Rnor_5.0777,654,267 - 78,157,458 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241598   ⟹   XP_006241660
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,455,050 - 70,757,276 (+)NCBI
Rnor_6.0778,290,756 - 78,592,227 (+)NCBI
Rnor_5.0777,654,267 - 78,157,458 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765440   ⟹   XP_008763662
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,423 - 70,757,276 (+)NCBI
Rnor_6.0778,092,037 - 78,592,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765441   ⟹   XP_008763663
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,423 - 70,757,276 (+)NCBI
Rnor_6.0778,092,037 - 78,592,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765442   ⟹   XP_008763664
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,423 - 70,757,276 (+)NCBI
Rnor_6.0778,092,037 - 78,592,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765443   ⟹   XP_008763665
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,423 - 70,757,276 (+)NCBI
Rnor_6.0778,092,037 - 78,592,227 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765447   ⟹   XP_008763669
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
Rnor_6.0778,092,088 - 78,594,164 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594608   ⟹   XP_017450097
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
Rnor_6.0778,092,088 - 78,594,164 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594609   ⟹   XP_017450098
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
Rnor_6.0778,092,088 - 78,594,164 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594611   ⟹   XP_017450100
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,455,100 - 70,757,197 (+)NCBI
Rnor_6.0778,290,806 - 78,594,164 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594612   ⟹   XP_017450101
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,455,100 - 70,757,197 (+)NCBI
Rnor_6.0778,290,806 - 78,594,164 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039078261   ⟹   XP_038934189
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,759,134 (+)NCBI
RefSeq Acc Id: XM_039078262   ⟹   XP_038934190
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078263   ⟹   XP_038934191
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078264   ⟹   XP_038934192
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078266   ⟹   XP_038934194
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078267   ⟹   XP_038934195
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078268   ⟹   XP_038934196
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078269   ⟹   XP_038934197
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078270   ⟹   XP_038934198
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078271   ⟹   XP_038934199
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078272   ⟹   XP_038934200
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078273   ⟹   XP_038934201
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078274   ⟹   XP_038934202
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078275   ⟹   XP_038934203
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078276   ⟹   XP_038934204
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078277   ⟹   XP_038934205
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078278   ⟹   XP_038934206
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078279   ⟹   XP_038934207
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078280   ⟹   XP_038934208
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078281   ⟹   XP_038934209
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078282   ⟹   XP_038934210
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,104 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078283   ⟹   XP_038934211
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078284   ⟹   XP_038934212
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078285   ⟹   XP_038934213
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078286   ⟹   XP_038934214
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078287   ⟹   XP_038934215
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,453,853 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078288   ⟹   XP_038934216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078289   ⟹   XP_038934217
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078290   ⟹   XP_038934218
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,248,474 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078291   ⟹   XP_038934219
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,455,100 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078292   ⟹   XP_038934220
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,455,100 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078293   ⟹   XP_038934221
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,455,100 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078294   ⟹   XP_038934222
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,455,100 - 70,757,197 (+)NCBI
RefSeq Acc Id: XM_039078295   ⟹   XP_038934223
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,646,658 - 70,757,197 (+)NCBI
Protein Sequences
Protein RefSeqs NP_446397 (Get FASTA)   NCBI Sequence Viewer  
  NP_665888 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241653 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241654 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241655 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241656 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241660 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763662 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763663 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763664 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763665 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763669 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450097 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450098 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450100 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450101 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934189 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934190 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934191 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934194 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934195 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934196 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934197 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934198 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934199 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934200 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934201 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934202 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934203 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934204 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934205 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934206 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934208 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934209 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934211 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934212 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934213 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934214 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934215 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934216 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934217 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934218 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934219 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934220 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934221 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934222 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934223 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF81644 (Get FASTA)   NCBI Sequence Viewer  
  AAF81645 (Get FASTA)   NCBI Sequence Viewer  
  AAF81646 (Get FASTA)   NCBI Sequence Viewer  
  AAF81647 (Get FASTA)   NCBI Sequence Viewer  
  AAF81648 (Get FASTA)   NCBI Sequence Viewer  
  AAF81649 (Get FASTA)   NCBI Sequence Viewer  
  AAF81650 (Get FASTA)   NCBI Sequence Viewer  
  AAF81651 (Get FASTA)   NCBI Sequence Viewer  
  AAF81652 (Get FASTA)   NCBI Sequence Viewer  
  AAF81653 (Get FASTA)   NCBI Sequence Viewer  
  AAF81654 (Get FASTA)   NCBI Sequence Viewer  
  AAF81657 (Get FASTA)   NCBI Sequence Viewer  
  AAN59930 (Get FASTA)   NCBI Sequence Viewer  
  EDM16341 (Get FASTA)   NCBI Sequence Viewer  
  EDM16342 (Get FASTA)   NCBI Sequence Viewer  
  EDM16343 (Get FASTA)   NCBI Sequence Viewer  
  EDM16344 (Get FASTA)   NCBI Sequence Viewer  
  EDM16345 (Get FASTA)   NCBI Sequence Viewer  
  EDM16346 (Get FASTA)   NCBI Sequence Viewer  
  EDM16347 (Get FASTA)   NCBI Sequence Viewer  
  EDM16348 (Get FASTA)   NCBI Sequence Viewer  
  EDM16349 (Get FASTA)   NCBI Sequence Viewer  
  EDM16350 (Get FASTA)   NCBI Sequence Viewer  
  EDM16351 (Get FASTA)   NCBI Sequence Viewer  
  Q9JIS1 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_446397   ⟸   NM_053945
- Peptide Label: isoform 1
- UniProtKB: Q9JIS1 (UniProtKB/Swiss-Prot),   Q9JIS0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_665888   ⟸   NM_145881
- Peptide Label: isoform 2
- UniProtKB: Q9JIS1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006241654   ⟸   XM_006241592
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_006241653   ⟸   XM_006241591
- Peptide Label: isoform X21
- Sequence:
RefSeq Acc Id: XP_006241656   ⟸   XM_006241594
- Peptide Label: isoform X26
- Sequence:
RefSeq Acc Id: XP_006241655   ⟸   XM_006241593
- Peptide Label: isoform X24
- Sequence:
RefSeq Acc Id: XP_006241660   ⟸   XM_006241598
- Peptide Label: isoform X33
- Sequence:
RefSeq Acc Id: XP_008763669   ⟸   XM_008765447
- Peptide Label: isoform X25
- Sequence:
RefSeq Acc Id: XP_008763663   ⟸   XM_008765441
- Peptide Label: isoform X32
- Sequence:
RefSeq Acc Id: XP_008763664   ⟸   XM_008765442
- Peptide Label: isoform X36
- Sequence:
RefSeq Acc Id: XP_008763662   ⟸   XM_008765440
- Peptide Label: isoform X30
- Sequence:
RefSeq Acc Id: XP_008763665   ⟸   XM_008765443
- Peptide Label: isoform X40
- Sequence:
RefSeq Acc Id: XP_017450097   ⟸   XM_017594608
- Peptide Label: isoform X27
- Sequence:
RefSeq Acc Id: XP_017450098   ⟸   XM_017594609
- Peptide Label: isoform X37
- Sequence:
RefSeq Acc Id: XP_017450101   ⟸   XM_017594612
- Peptide Label: isoform X44
- Sequence:
RefSeq Acc Id: XP_017450100   ⟸   XM_017594611
- Peptide Label: isoform X43
- Sequence:
RefSeq Acc Id: ENSRNOP00000006393   ⟸   ENSRNOT00000006393
RefSeq Acc Id: ENSRNOP00000045165   ⟸   ENSRNOT00000043079
RefSeq Acc Id: ENSRNOP00000047914   ⟸   ENSRNOT00000039984
RefSeq Acc Id: ENSRNOP00000043010   ⟸   ENSRNOT00000050753
RefSeq Acc Id: XP_038934189   ⟸   XM_039078261
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038934202   ⟸   XM_039078274
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038934205   ⟸   XM_039078277
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038934200   ⟸   XM_039078272
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038934197   ⟸   XM_039078269
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038934192   ⟸   XM_039078264
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038934195   ⟸   XM_039078267
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038934199   ⟸   XM_039078271
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038934201   ⟸   XM_039078273
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038934207   ⟸   XM_039078279
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038934190   ⟸   XM_039078262
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038934196   ⟸   XM_039078268
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038934203   ⟸   XM_039078275
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038934208   ⟸   XM_039078280
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038934194   ⟸   XM_039078266
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038934198   ⟸   XM_039078270
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038934191   ⟸   XM_039078263
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038934204   ⟸   XM_039078276
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038934209   ⟸   XM_039078281
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038934206   ⟸   XM_039078278
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038934210   ⟸   XM_039078282
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038934213   ⟸   XM_039078285
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038934214   ⟸   XM_039078286
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038934216   ⟸   XM_039078288
- Peptide Label: isoform X38
RefSeq Acc Id: XP_038934211   ⟸   XM_039078283
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038934217   ⟸   XM_039078289
- Peptide Label: isoform X39
RefSeq Acc Id: XP_038934218   ⟸   XM_039078290
- Peptide Label: isoform X41
RefSeq Acc Id: XP_038934212   ⟸   XM_039078284
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038934215   ⟸   XM_039078287
- Peptide Label: isoform X35
RefSeq Acc Id: XP_038934220   ⟸   XM_039078292
- Peptide Label: isoform X45
RefSeq Acc Id: XP_038934221   ⟸   XM_039078293
- Peptide Label: isoform X46
RefSeq Acc Id: XP_038934222   ⟸   XM_039078294
- Peptide Label: isoform X47
RefSeq Acc Id: XP_038934219   ⟸   XM_039078291
- Peptide Label: isoform X42
RefSeq Acc Id: XP_038934223   ⟸   XM_039078295
- Peptide Label: isoform X48
RefSeq Acc Id: ENSRNOP00000083681   ⟸   ENSRNOT00000112311
RefSeq Acc Id: ENSRNOP00000079853   ⟸   ENSRNOT00000116297
RefSeq Acc Id: ENSRNOP00000087824   ⟸   ENSRNOT00000106052
Protein Domains
C2   FYVE-type   PDZ   RabBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JIS1-F1-model_v2 AlphaFold Q9JIS1 1-1555 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695308
Promoter ID:EPDNEW_R5833
Type:single initiation site
Name:Rims2_1
Description:regulating synaptic membrane exocytosis 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0778,558,785 - 78,558,845EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620001 AgrOrtholog
BioCyc Gene G2FUF-33573 BioCyc
Ensembl Genes ENSRNOG00000004201 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000006393 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000043010 ENTREZGENE
  ENSRNOP00000043010.5 UniProtKB/TrEMBL
  ENSRNOP00000045165.4 UniProtKB/TrEMBL
  ENSRNOP00000047914 ENTREZGENE
  ENSRNOP00000047914.5 UniProtKB/TrEMBL
  ENSRNOP00000079853 ENTREZGENE
  ENSRNOP00000079853.1 UniProtKB/TrEMBL
  ENSRNOP00000083681 ENTREZGENE
  ENSRNOP00000083681.1 UniProtKB/TrEMBL
  ENSRNOP00000087824.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006393 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000039984 ENTREZGENE
  ENSRNOT00000039984.6 UniProtKB/TrEMBL
  ENSRNOT00000043079.5 UniProtKB/TrEMBL
  ENSRNOT00000050753 ENTREZGENE
  ENSRNOT00000050753.5 UniProtKB/TrEMBL
  ENSRNOT00000106052.1 UniProtKB/TrEMBL
  ENSRNOT00000112311 ENTREZGENE
  ENSRNOT00000112311.1 UniProtKB/TrEMBL
  ENSRNOT00000116297 ENTREZGENE
  ENSRNOT00000116297.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FYVE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab_BD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rim-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIM2 UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:116839 UniProtKB/Swiss-Prot
NCBI Gene 116839 ENTREZGENE
PANTHER PTHR12157 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12157:SF15 UniProtKB/TrEMBL
Pfam FYVE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rims2 PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RABBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096P6M3_RAT UniProtKB/TrEMBL
  A0A096P6M8_RAT UniProtKB/TrEMBL
  A0A8I5ZP02_RAT UniProtKB/TrEMBL
  A0A8I5ZVS6_RAT UniProtKB/TrEMBL
  A0A8I6A6L6_RAT UniProtKB/TrEMBL
  F1LNC5_RAT UniProtKB/TrEMBL
  Q9JIS0 ENTREZGENE
  Q9JIS1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8CIX2 UniProtKB/Swiss-Prot
  Q9JHJ6 UniProtKB/Swiss-Prot
  Q9JIR2 UniProtKB/Swiss-Prot
  Q9JIR5 UniProtKB/Swiss-Prot
  Q9JIR6 UniProtKB/Swiss-Prot
  Q9JIR7 UniProtKB/Swiss-Prot
  Q9JIR8 UniProtKB/Swiss-Prot
  Q9JIR9 UniProtKB/Swiss-Prot
  Q9JIS0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Rims2  regulating synaptic membrane exocytosis 2  LOC103692905  regulating synaptic membrane exocytosis protein 2-like  Data Merged 737654 PROVISIONAL
2014-08-25 LOC103692905  regulating synaptic membrane exocytosis protein 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-12-01   regulating synaptic membrane exocytosis 2  Rims2  Rim2 protein  Name updated 1299863 APPROVED
2004-09-10 Rims2  Rim2 protein  Rim2    Symbol and Name updated 1299863 APPROVED
2002-08-07 Rim2  Rim2 protein      Symbol and Name status set to provisional 70820 PROVISIONAL