Or6c228-ps1 (olfactory receptor family 6 subfamily C member 228, pseudogene 1) - Rat Genome Database

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Gene: Or6c228-ps1 (olfactory receptor family 6 subfamily C member 228, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Or6c228-ps1
Name: olfactory receptor family 6 subfamily C member 228, pseudogene 1
RGD ID: 1334363
Description: olfactory receptor pseudogene
Type: pseudo
RefSeq Status: REVIEWED
Previously known as: LOC100912177; LOC103692769; olfactory receptor 6C3-like; olfactory receptor pseudogene 1011; Olr1011-ps
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr875,999,283 - 6,000,184 (+)NCBIGRCr8
mRatBN7.275,348,452 - 5,349,353 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx78,242,795 - 8,243,696 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0710,118,443 - 10,119,344 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.077,953,690 - 7,954,591 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.077,047,442 - 7,048,343 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.077,144,629 - 7,145,530 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.476,744,973 - 6,745,674 (+)ENTREZGENERGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.176,744,872 - 6,745,974 (+)NCBI
Celera73,595,042 - 3,595,943 (+)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.

Genomics

Variants

.
Variants in Or6c228-ps1
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_003528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35152 BioCyc
NCBI Gene 404921 ENTREZGENE
PhenoGen Or6c228-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or6c228-ps1  olfactory receptor family 6 subfamily C member 228, pseudogene 1  Olr1011-ps  olfactory receptor pseudogene 1011  Symbol and Name Changed 1299863 APPROVED
2021-03-09 Olr1011-ps  olfactory receptor pseudogene 1011  LOC103692769  olfactory receptor 6C3-like  Data merged from RGD:9140808 737654 PROVISIONAL
2015-07-29 LOC103692769  olfactory receptor 6C3-like  LOC100912177  olfactory receptor 6C3-like  Data merged from RGD:6488241 737654 PROVISIONAL
2014-08-25 LOC103692769  olfactory receptor 6C3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100912177  olfactory receptor 6C3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-02-04 Olr1011-ps  olfactory receptor pseudogene 1011      Symbol and Name status set to approved 70820 APPROVED