Rbms2 (RNA binding motif, single stranded interacting protein 2) - Rat Genome Database

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Gene: Rbms2 (RNA binding motif, single stranded interacting protein 2) Rattus norvegicus
Analyze
Symbol: Rbms2
Name: RNA binding motif, single stranded interacting protein 2
RGD ID: 1304813
Description: Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol and nucleus. Orthologous to human RBMS2 (RNA binding motif single stranded interacting protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC288771; RNA-binding motif, single-stranded-interacting protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,145,240 - 1,201,690 (-)NCBIGRCr8
mRatBN7.27560,787 - 603,881 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7560,648 - 600,232 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,323,000 - 3,358,587 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,199,012 - 5,234,601 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,500,206 - 5,536,283 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,550,524 - 2,592,533 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,554,308 - 2,588,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.072,529,734 - 2,571,381 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,426,634 - 1,462,518 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.171,426,634 - 1,462,518 (-)NCBI
Celera7443,717 - 479,346 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Rbms2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,145,240 - 1,201,690 (-)NCBIGRCr8
mRatBN7.27560,787 - 603,881 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7560,648 - 600,232 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,323,000 - 3,358,587 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,199,012 - 5,234,601 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,500,206 - 5,536,283 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,550,524 - 2,592,533 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,554,308 - 2,588,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.072,529,734 - 2,571,381 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,426,634 - 1,462,518 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.171,426,634 - 1,462,518 (-)NCBI
Celera7443,717 - 479,346 (-)NCBICelera
Cytogenetic Map7q11NCBI
RBMS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,520,405 - 56,596,193 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,521,820 - 56,596,193 (+)EnsemblGRCh38hg38GRCh38
GRCh371256,915,604 - 56,989,977 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,201,993 - 55,269,875 (+)NCBINCBI36Build 36hg18NCBI36
Build 341255,201,992 - 55,269,875NCBI
Celera1256,568,736 - 56,642,636 (+)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1253,954,563 - 54,029,332 (+)NCBIHuRef
CHM1_11256,883,180 - 56,957,513 (+)NCBICHM1_1
T2T-CHM13v2.01256,488,069 - 56,564,187 (+)NCBIT2T-CHM13v2.0
Rbms2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,965,339 - 128,016,166 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,967,427 - 128,016,166 (-)EnsemblGRCm39 Ensembl
GRCm3810128,129,470 - 128,180,297 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,131,558 - 128,180,297 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710127,566,526 - 127,617,353 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,532,419 - 127,583,246 (-)NCBIMGSCv36mm8
Celera10130,524,214 - 130,574,910 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.41NCBI
Rbms2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,104,197 - 4,144,816 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554584,104,124 - 4,149,120 (+)NCBIChiLan1.0ChiLan1.0
RBMS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,711,973 - 37,806,161 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,709,279 - 37,802,926 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,295,878 - 32,390,287 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,572,211 - 32,642,619 (-)NCBIpanpan1.1PanPan1.1panPan2
RBMS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110738,215 - 829,965 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10766,206 - 828,308 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10801,416 - 893,409 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010747,196 - 839,295 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10775,277 - 837,640 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110724,247 - 816,215 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010967,355 - 1,059,400 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,091,075 - 1,182,987 (+)NCBIUU_Cfam_GSD_1.0
Rbms2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,955,611 - 58,027,817 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646842,532 - 932,229 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646842,408 - 914,624 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBMS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,819,862 - 21,932,600 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,819,852 - 21,933,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,502,183 - 23,607,282 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBMS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,466,904 - 52,563,325 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,473,542 - 52,538,496 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,412,602 - 193,508,937 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbms2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,451,973 - 11,523,088 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480211,430,464 - 11,523,948 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbms2
255 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:109
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000048848
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000048848   ⟹   ENSRNOP00000043168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7564,439 - 600,232 (-)Ensembl
Rnor_6.0 Ensembl72,554,308 - 2,588,686 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088619   ⟹   ENSRNOP00000070681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7560,724 - 600,135 (-)Ensembl
Rnor_6.0 Ensembl72,554,308 - 2,588,843 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118787   ⟹   ENSRNOP00000086945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7560,648 - 600,138 (-)Ensembl
RefSeq Acc Id: NM_001025403   ⟹   NP_001020574
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,149,028 - 1,184,728 (-)NCBI
mRatBN7.27564,432 - 600,134 (-)NCBI
Rnor_6.072,554,304 - 2,588,686 (-)NCBI
Rnor_5.072,529,734 - 2,571,381 (-)NCBI
RGSC_v3.471,426,634 - 1,462,518 (-)RGD
Celera7443,717 - 479,346 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240744   ⟹   XP_006240806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,188,473 (-)NCBI
mRatBN7.27564,050 - 603,881 (-)NCBI
Rnor_6.072,550,604 - 2,592,533 (-)NCBI
Rnor_5.072,529,734 - 2,571,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765023   ⟹   XP_008763245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,184,572 (-)NCBI
mRatBN7.27564,050 - 599,954 (-)NCBI
Rnor_6.072,550,604 - 2,588,596 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078542   ⟹   XP_038934470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,185,129 (-)NCBI
mRatBN7.27564,050 - 600,390 (-)NCBI
RefSeq Acc Id: XM_039078543   ⟹   XP_038934471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,184,945 (-)NCBI
mRatBN7.27564,050 - 600,282 (-)NCBI
RefSeq Acc Id: XM_039078544   ⟹   XP_038934472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,184,949 (-)NCBI
mRatBN7.27564,050 - 600,282 (-)NCBI
RefSeq Acc Id: XM_039078545   ⟹   XP_038934473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,154,757 - 1,184,950 (-)NCBI
mRatBN7.27572,353 - 600,282 (-)NCBI
RefSeq Acc Id: XM_039078546   ⟹   XP_038934474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,158,755 (-)NCBI
mRatBN7.27564,050 - 574,160 (-)NCBI
RefSeq Acc Id: XM_063263084   ⟹   XP_063119154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,188,473 (-)NCBI
RefSeq Acc Id: XM_063263085   ⟹   XP_063119155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,184,971 (-)NCBI
RefSeq Acc Id: XM_063263086   ⟹   XP_063119156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,188,491 (-)NCBI
RefSeq Acc Id: XM_063263087   ⟹   XP_063119157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,201,690 (-)NCBI
RefSeq Acc Id: XM_063263088   ⟹   XP_063119158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,154,143 (-)NCBI
RefSeq Acc Id: XR_001838668
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,184,945 (-)NCBI
mRatBN7.27560,787 - 600,282 (-)NCBI
Rnor_6.072,550,524 - 2,588,771 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010052944
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,145,240 - 1,184,971 (-)NCBI
RefSeq Acc Id: NP_001020574   ⟸   NM_001025403
- UniProtKB: Q4QR81 (UniProtKB/TrEMBL),   A0A8I6A6C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240806   ⟸   XM_006240744
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008763245   ⟸   XM_008765023
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSRNOP00000043168   ⟸   ENSRNOT00000048848
Ensembl Acc Id: ENSRNOP00000070681   ⟸   ENSRNOT00000088619
RefSeq Acc Id: XP_038934470   ⟸   XM_039078542
- Peptide Label: isoform X2
- UniProtKB: Q4QR81 (UniProtKB/TrEMBL),   A0A8I6A6C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934472   ⟸   XM_039078544
- Peptide Label: isoform X5
- UniProtKB: F7EVG9 (UniProtKB/TrEMBL),   A0A8I6A6C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934471   ⟸   XM_039078543
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A6C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934474   ⟸   XM_039078546
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038934473   ⟸   XM_039078545
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000086945   ⟸   ENSRNOT00000118787
RefSeq Acc Id: XP_063119157   ⟸   XM_063263087
- Peptide Label: isoform X2
- UniProtKB: Q4QR81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119156   ⟸   XM_063263086
- Peptide Label: isoform X2
- UniProtKB: Q4QR81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119154   ⟸   XM_063263084
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JYJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119155   ⟸   XM_063263085
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JYJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119158   ⟸   XM_063263088
- Peptide Label: isoform X8
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JYJ7-F1-model_v2 AlphaFold A0A0G2JYJ7 1-405 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694924
Promoter ID:EPDNEW_R5448
Type:initiation region
Name:Rbms2_1
Description:RNA binding motif, single stranded interacting protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5449  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.072,588,734 - 2,588,794EPDNEW
RGD ID:13694938
Promoter ID:EPDNEW_R5449
Type:initiation region
Name:Rbms2_2
Description:RNA binding motif, single stranded interacting protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5448  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.072,588,864 - 2,588,924EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304813 AgrOrtholog
BioCyc Gene G2FUF-35391 BioCyc
Ensembl Genes ENSRNOG00000003076 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048848.4 UniProtKB/TrEMBL
  ENSRNOT00000088619.2 UniProtKB/TrEMBL
  ENSRNOT00000118787.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7445017 IMAGE-MGC_LOAD
InterPro Euk_RNA-bind_prot UniProtKB/TrEMBL
  Hud_Sxl_RNA UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_RNP1 UniProtKB/TrEMBL
KEGG Report rno:288771 UniProtKB/TrEMBL
MGC_CLONE MGC:114412 IMAGE-MGC_LOAD
NCBI Gene 288771 ENTREZGENE
PANTHER OS02G0815200 PROTEIN UniProtKB/TrEMBL
  OS02G0815200 PROTEIN UniProtKB/TrEMBL
  RNA BINDING PROTEIN UniProtKB/TrEMBL
  RNA-BINDING MOTIF, SINGLE-STRANDED-INTERACTING PROTEIN 2 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PhenoGen Rbms2 PhenoGen
PRINTS HUDSXLRNA UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003076 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0G2JYJ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6C0 ENTREZGENE, UniProtKB/TrEMBL
  A6KSA5_RAT UniProtKB/TrEMBL
  F7EVG9 ENTREZGENE, UniProtKB/TrEMBL
  Q4QR81 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Rbms2  RNA binding motif, single stranded interacting protein 2  Rbms2_predicted  RNA binding motif, single stranded interacting protein 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rbms2_predicted  RNA binding motif, single stranded interacting protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED