Snord37 (small nucleolar RNA, C/D box 37) - Rat Genome Database

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Gene: Snord37 (small nucleolar RNA, C/D box 37) Rattus norvegicus
Analyze
Symbol: Snord37 (Ensembl: Snord37l)
Name: small nucleolar RNA, C/D box 37
RGD ID: 40984152
Description: INTERACTS WITH benzo[a]pyrene (ortholog); cadmium dichloride (ortholog); DDT (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120093964; small nucleolar RNA SNORD37; small nucleolar RNA, C/D box 37 like; Snord37l
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,186,922 - 9,186,985 (-)NCBIGRCr8
mRatBN7.278,536,202 - 8,536,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,536,202 - 8,536,265 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl711,404,455 - 11,404,518 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snord37
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,186,922 - 9,186,985 (-)NCBIGRCr8
mRatBN7.278,536,202 - 8,536,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,536,202 - 8,536,265 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl711,404,455 - 11,404,518 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map7q11NCBI
SNORD37
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,982,507 - 3,982,572 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,982,507 - 3,982,572 (-)EnsemblGRCh38hg38GRCh38
GRCh37193,982,505 - 3,982,570 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,933,505 - 3,933,570 (-)NCBINCBI36Build 36hg18NCBI36
Celera193,918,580 - 3,918,645 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef193,744,601 - 3,744,666 (-)NCBIHuRef
CHM1_1193,982,091 - 3,982,156 (-)NCBICHM1_1
T2T-CHM13v2.0193,960,700 - 3,960,765 (-)NCBIT2T-CHM13v2.0
Snord37
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,014,795 - 81,014,847 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,014,784 - 81,014,847 (+)EnsemblGRCm39 Ensembl
GRCm381081,178,961 - 81,179,013 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,178,950 - 81,179,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv371080,641,706 - 80,641,758 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1082,199,318 - 82,199,370 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
LOC119864850
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2055,306,227 - 55,306,291 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02056,240,811 - 56,240,875 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12055,296,784 - 55,296,848 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,778,341 - 55,778,405 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02055,977,025 - 55,977,089 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005487673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000080463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl78,536,202 - 8,536,265 (-)Ensembl
RefSeq Acc Id: XR_005487673
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr879,186,922 - 9,186,985 (-)NCBI
mRatBN7.278,536,202 - 8,536,265 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35002 BioCyc
Ensembl Genes ENSRNOG00000060818 Ensembl
NCBI Gene LOC120093964 ENTREZGENE
PhenoGen Snord37 PhenoGen
RatGTEx ENSRNOG00000060818 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-04-11 Snord37  small nucleolar RNA, C/D box 37  Snord37l  small nucleolar RNA, C/D box 37 like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-01-27 Snord37l  small nucleolar RNA, C/D box 37 like  Snord37l  small nucleolar RNA, C/D box 37  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-11-29 Snord37l  small nucleolar RNA, C/D box 37  LOC120093964  small nucleolar RNA SNORD37  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120093964  small nucleolar RNA SNORD37  Snord37  small nucleolar RNA, C/D box 37  Data merged from RGD:15013614 737654 PROVISIONAL
2021-01-26 LOC120093964  small nucleolar RNA SNORD37      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Snord37  small nucleolar RNA, C/D box 37      Symbol and Name status set to provisional 45752 PROVISIONAL