Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | combined oxidative phosphorylation deficiency 55 | | ISO | POLRMT (Homo sapiens) | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | combined oxidative phosphorylation deficiency 55 | | ISO | POLRMT (Homo sapiens) | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:14651853 | PMID:17337445 | PMID:18063578 | PMID:18614015 | PMID:21278163 | PMID:22658674 | PMID:22681889 | PMID:23283301 | PMID:29445193 |
Polrmt (Rattus norvegicus - Norway rat) |
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POLRMT (Homo sapiens - human) |
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Polrmt (Mus musculus - house mouse) |
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Polrmt (Chinchilla lanigera - long-tailed chinchilla) |
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POLRMT (Pan paniscus - bonobo/pygmy chimpanzee) |
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SHC2 (Canis lupus familiaris - dog) |
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Polrmt (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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POLRMT (Sus scrofa - pig) |
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POLRMT (Chlorocebus sabaeus - green monkey) |
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Polrmt (Heterocephalus glaber - naked mole-rat) |
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Variants in Polrmt
30 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 22 | 12 | 10 | 2 | 10 | 1 | 64 | 30 | 35 | 1 | |||
Low | 3 | 21 | 45 | 31 | 17 | 31 | 8 | 10 | 10 | 5 | 6 | 10 | 8 |
Below cutoff |
RefSeq Transcripts | NM_001106766 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006240859 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH474029 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAXUCZ010000007 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000039232 ⟹ ENSRNOP00000032448 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000118094 ⟹ ENSRNOP00000078121 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001106766 ⟹ NP_001100236 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006240859 ⟹ XP_006240921 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001100236 | (Get FASTA) | NCBI Sequence Viewer |
XP_006240921 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL89399 | (Get FASTA) | NCBI Sequence Viewer |
EDL89400 | (Get FASTA) | NCBI Sequence Viewer | |
EDL89401 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000032448 | ||
ENSRNOP00000032448.6 | |||
ENSRNOP00000078121.1 |
RefSeq Acc Id: | NP_001100236 ⟸ NM_001106766 |
- UniProtKB: | D3ZYB6 (UniProtKB/TrEMBL), A6K8X9 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006240921 ⟸ XM_006240859 |
- Peptide Label: | isoform X1 |
- UniProtKB: | D3ZYB6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000032448 ⟸ ENSRNOT00000039232 |
RefSeq Acc Id: | ENSRNOP00000078121 ⟸ ENSRNOT00000118094 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZYB6-F1-model_v2 | AlphaFold | D3ZYB6 | 1-1203 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13695054 | ||||||||
Promoter ID: | EPDNEW_R5578 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Polrmt_1 | ||||||||
Description: | RNA polymerase mitochondrial | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1304599 | AgrOrtholog |
BioCyc Gene | G2FUF-34885 | BioCyc |
Ensembl Genes | ENSRNOG00000024879 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000039232 | ENTREZGENE |
ENSRNOT00000039232.6 | UniProtKB/TrEMBL | |
ENSRNOT00000118094.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.1320.10 | UniProtKB/TrEMBL |
1.10.287.280 | UniProtKB/TrEMBL | |
1.25.40.10 | UniProtKB/TrEMBL | |
5' to 3' exonuclease, C-terminal subdomain | UniProtKB/TrEMBL | |
InterPro | DNA-dir_RNA_pol_phage | UniProtKB/TrEMBL |
DNA-dir_Rpol_C_phage-type | UniProtKB/TrEMBL | |
DNA/RNA_pol_sf | UniProtKB/TrEMBL | |
RNA_POL_N_sf | UniProtKB/TrEMBL | |
RPOL_N | UniProtKB/TrEMBL | |
TPR-like_helical_dom_sf | UniProtKB/TrEMBL | |
KEGG Report | rno:299604 | UniProtKB/TrEMBL |
NCBI Gene | 299604 | ENTREZGENE |
PANTHER | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL | UniProtKB/TrEMBL |
RNA_pol_phage | UniProtKB/TrEMBL | |
Pfam | RNA_pol | UniProtKB/TrEMBL |
RPOL_N | UniProtKB/TrEMBL | |
PhenoGen | Polrmt | PhenoGen |
PROSITE | RNA_POL_PHAGE_1 | UniProtKB/TrEMBL |
RNA_POL_PHAGE_2 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000024879 | RatGTEx |
SMART | RPOL_N | UniProtKB/TrEMBL |
Superfamily-SCOP | SSF56672 | UniProtKB/TrEMBL |
UniProt | A0A8I5Y8F7_RAT | UniProtKB/TrEMBL |
A6K8X9 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZYB6 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-07-21 | Polrmt | RNA polymerase mitochondrial | Polrmt | polymerase (RNA) mitochondrial | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2016-03-08 | Polrmt | polymerase (RNA) mitochondrial | Polrmt | polymerase (RNA) mitochondrial (DNA directed) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | Polrmt | polymerase (RNA) mitochondrial (DNA directed) | Polrmt_predicted | polymerase (RNA) mitochondrial (DNA directed) (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Polrmt_predicted | polymerase (RNA) mitochondrial (DNA directed) (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |