Or6c207 (olfactory receptor family 6 subfamily C member 207) - Rat Genome Database

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Gene: Or6c207 (olfactory receptor family 6 subfamily C member 207) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or6c207 (Ensembl: Olr920)
Name: olfactory receptor family 6 subfamily C member 207 (Ensembl:olfactory receptor 920)
RGD ID: 1332717
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 996; olfactory receptor gene Olr996; olfactory receptor Olr996; Olr996
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr875,622,044 - 5,622,979 (+)NCBIGRCr8
mRatBN7.274,971,194 - 4,972,129 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl74,971,194 - 4,972,129 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl72,548,521 - 2,549,471 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx77,856,310 - 7,857,245 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.079,731,993 - 9,732,928 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
Rnor_6.0716,009,639 - 16,010,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl716,009,639 - 16,010,574 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.076,690,472 - 6,691,102 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.476,358,951 - 6,359,886 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.176,358,950 - 6,359,886 (+)NCBI
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Or6c207
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3
Count of miRNA genes:3
Interacting mature miRNAs:3
Transcripts:ENSRNOT00000051296
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat


Expression

RNA-SEQ Expression

ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
reproductive system
1 2 1 1 1 1 3 2 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001000700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000051296   ⟹   ENSRNOP00000048459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl74,971,194 - 4,972,129 (+)Ensembl
Rnor_6.0 Ensembl716,009,639 - 16,010,574 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075032   ⟹   ENSRNOP00000064749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl72,548,521 - 2,549,471 (+)Ensembl
RefSeq Acc Id: NM_001000700   ⟹   NP_001000700
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr875,622,044 - 5,622,979 (+)NCBI
mRatBN7.274,971,194 - 4,972,129 (+)NCBI
Rnor_6.0716,009,639 - 16,010,574 (-)NCBI
Rnor_5.076,690,472 - 6,691,102 (+)NCBI
RGSC_v3.476,358,951 - 6,359,886 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000700 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048459.1
  ENSRNOP00000064749.3
RefSeq Acc Id: NP_001000700   ⟸   NM_001000700
- UniProtKB: D3ZEF0 (UniProtKB/TrEMBL),   M0R5S1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048459   ⟸   ENSRNOT00000051296
Ensembl Acc Id: ENSRNOP00000064749   ⟸   ENSRNOT00000075032
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZEF0-F1-model_v2 AlphaFold D3ZEF0 1-311 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1332717 AgrOrtholog
BioCyc Gene G2FUF-35173 BioCyc
Ensembl Genes ENSRNOG00000028911 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000065522 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051296.2 UniProtKB/TrEMBL
  ENSRNOT00000075032.3 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfact_rcpt_6C-like UniProtKB/TrEMBL
KEGG Report rno:404924 UniProtKB/TrEMBL
NCBI Gene 404924 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or6c207 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000028911 RatGTEx
  ENSRNOG00000065522 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt D3ZEF0 ENTREZGENE, UniProtKB/TrEMBL
  M0R5S1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or6c207  olfactory receptor family 6 subfamily C member 207  Olr996  olfactory receptor 996  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr996  olfactory receptor 996   Olr996_predicted  olfactory receptor 996 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr996_predicted  olfactory receptor 996 (predicted)      Symbol and Name status set to approved 70820 APPROVED