Or6c66e-ps1 (olfactory receptor family 6 subfamily C member 66E, pseudogene 1) - Rat Genome Database

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Gene: Or6c66e-ps1 (olfactory receptor family 6 subfamily C member 66E, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Or6c66e-ps1
Name: olfactory receptor family 6 subfamily C member 66E, pseudogene 1
RGD ID: 1333766
Description: olfactory receptor pseudogene
Type: pseudo
RefSeq Status: REVIEWED
Previously known as: olfactory receptor pseudogene 941; Olr941-ps
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr873,986,108 - 3,987,055 (+)NCBIGRCr8
mRatBN7.273,337,096 - 3,338,043 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.078,059,426 - 8,060,373 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.078,167,575 - 8,168,522 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.474,603,070 - 4,604,017 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.174,602,969 - 4,604,117 (+)NCBI
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.

Genomics

Variants

.
Variants in Or6c66e-ps1
7 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_003623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35241 BioCyc
NCBI Gene 405271 ENTREZGENE
PhenoGen Or6c66e-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or6c66e-ps1  olfactory receptor family 6 subfamily C member 66E, pseudogene 1  Olr941-ps  olfactory receptor pseudogene 941  Symbol and Name Changed 1299863 APPROVED
2008-01-09 Olr941-ps  olfactory receptor pseudogene 941  LOC500772  similar to olfactory receptor Olfr798  Data merged from RGD:1595683 1643240 APPROVED
2006-11-20 LOC500772  similar to olfactory receptor Olfr798      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-02-04 Olr941-ps  olfactory receptor pseudogene 941      Symbol and Name status set to approved 70820 APPROVED