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Gene: Slc39a5 (solute carrier family 39 member 5) Rattus norvegicus
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Symbol: Slc39a5
Name: solute carrier family 39 member 5
Description: Predicted to have zinc ion transmembrane transporter activity. Predicted to be involved in several processes, including cellular zinc ion homeostasis; regulation of RNA metabolic process; and zinc ion import across plasma membrane. Predicted to localize to the basolateral plasma membrane and integral component of plasma membrane. Human ortholog(s) of this gene implicated in myopia. Orthologous to human SLC39A5 (solute carrier family 39 member 5); INTERACTS WITH (+)-schisandrin B; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC362812; solute carrier family 39 (metal ion transporter), member 5; solute carrier family 39 (zinc transporter), member 5; zinc transporter ZIP5
Orthologs:
Homo sapiens (human) : SLC39A5 (solute carrier family 39 member 5)  HGNC  Alliance
Mus musculus (house mouse) : Slc39a5 (solute carrier family 39 (metal ion transporter), member 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Slc39a5 (solute carrier family 39 member 5)
Pan paniscus (bonobo/pygmy chimpanzee) : SLC39A5 (solute carrier family 39 member 5)
Canis lupus familiaris (dog) : SLC39A5 (solute carrier family 39 member 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Slc39a5 (solute carrier family 39 member 5)
Sus scrofa (pig) : SLC39A5 (solute carrier family 39 member 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.072,813,875 - 2,819,917 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,813,875 - 2,819,299 (-)Ensembl
Rnor_5.072,792,038 - 2,798,370 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,686,969 - 1,692,393 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.171,687,705 - 1,692,002 (-)NCBI
Celera7698,310 - 703,734 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Slc39a5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310322
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.