LOC120094016 (small nucleolar RNA SNORA79) - Rat Genome Database

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Gene: LOC120094016 (small nucleolar RNA SNORA79) Rattus norvegicus
Analyze
Symbol: LOC120094016
Name: small nucleolar RNA SNORA79
RGD ID: 40988644
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07073270.1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,418,837 - 1,418,981 (-)NCBIGRCr8
mRatBN7.27834,295 - 834,439 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7834,295 - 834,439 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl72,823,352 - 2,823,496 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005487709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000089572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7834,295 - 834,439 (-)Ensembl
RefSeq Acc Id: XR_005487709
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,418,837 - 1,418,981 (-)NCBI
mRatBN7.27834,295 - 834,439 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35370 BioCyc
Ensembl Genes ENSRNOG00000059833 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000089572 ENTREZGENE
NCBI Gene LOC120094016 ENTREZGENE
PhenoGen LOC120094016 PhenoGen
RatGTEx ENSRNOG00000059833 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120094016  small nucleolar RNA SNORA79  AABR07073270.1    Data merged from RGD:15012866 737654 PROVISIONAL
2021-01-26 LOC120094016  small nucleolar RNA SNORA79      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07073270.1        Symbol and Name status set to provisional 45752 PROVISIONAL