Slc1a6 (solute carrier family 1 member 6)

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Gene: Slc1a6 (solute carrier family 1 member 6) Rattus norvegicus

Analyze

Symbol:

Slc1a6

Name:

solute carrier family 1 member 6

RGD ID:

620340

Description:

Exhibits high-affinity glutamate transmembrane transporter activity. Involved in L-glutamate import across plasma membrane. Localizes to integral component of postsynaptic membrane; membrane protein complex; and parallel fiber to Purkinje cell synapse. Orthologous to human SLC1A6 (solute carrier family 1 member 6); PARTICIPATES IN glutamate signaling pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

EAAT4; excitatory amino acid transporter 4; high affinity aspartate/glutamate transporter; high-affinity neuronal glutamate transporter; MGC114297; sodium-dependent glutamate/aspartate transporter; solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	10,841,836 - 10,870,424 (-)	NCBI
Rnor_6.0 Ensembl	7	13,730,253 - 13,751,271 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	7	13,730,101 - 13,758,170 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	13,893,841 - 13,921,839 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	12,393,284 - 12,419,893 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	12,393,284 - 12,419,880 (-)	NCBI
Celera	7	8,958,917 - 8,988,056 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-hydroxypropanoic acid (ISO)

3,4-dichloroaniline (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

androgen antagonist (EXP)

benzo[a]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylparaben (EXP)

calcitriol (ISO)

chlorpyrifos (ISO)

DDE (EXP)

dextran sulfate (ISO)

dibutyl phthalate (EXP)

dichlorine (EXP)

diuron (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

enzacamene (EXP)

epoxiconazole (EXP)

ethanol (EXP)

fenvalerate (EXP)

folic acid (ISO)

furan (EXP)

glycidol (EXP)

indometacin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

linuron (EXP)

lipopolysaccharide (ISO)

methoxychlor (EXP)

omega-6 fatty acid (ISO)

ozone (EXP)

paracetamol (EXP)

PCB138 (ISO)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

prochloraz (EXP)

procymidone (EXP)

rac-lactic acid (ISO)

SB 431542 (ISO)

Soman (EXP)

tamibarotene (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tributylstannane (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP)

valproic acid (EXP,ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

L-glutamate import across plasma membrane (IDA)

L-glutamate transmembrane transport (IDA,IEA,ISO)

neurotransmitter uptake (IEA,ISO)

regulation of membrane potential (IEA,ISO)

Cellular Component

glutamatergic synapse (IEA)

Golgi apparatus (IEA,ISO)

integral component of plasma membrane (IMP)

integral component of postsynaptic membrane (IDA)

integral component of presynaptic membrane (IEA)

intermediate filament cytoskeleton (IEA,ISO)

membrane (ISO)

membrane protein complex (IDA)

parallel fiber to Purkinje cell synapse (IDA)

plasma membrane (ISO)

Molecular Function

anion transmembrane transporter activity (IDA)

high-affinity glutamate transmembrane transporter activity (IDA)

L-glutamate transmembrane transporter activity (IEA,ISO,TAS)

metal ion binding (IEA)

symporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

glutamate signaling pathway (IEA)

References

References - curated


1.	Abousaab A, etal., J Membr Biol. 2016 Jun;249(3):239-49. doi: 10.1007/s00232-015-9863-0. Epub 2015 Dec 21.
2.	Cholet N, etal., Cereb Cortex 2002 May;12(5):515-25.
3.	Dehnes Y, etal., J Neurosci. 1998 May 15;18(10):3606-19.
4.	Furuta A, etal., J Neurosci. 1997 Nov 1;17(21):8363-75.
5.	GOA data from the GO Consortium
6.	MGD data from the GO Consortium
7.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	Pipeline to import KEGG annotations from KEGG into RGD
9.	RGD automated data pipeline
10.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7791878	PMID:12477932	PMID:14506254	PMID:14715943	PMID:14727177	PMID:16601148	PMID:16837599	PMID:17490622	PMID:18540911	PMID:18770868	PMID:19747495	PMID:20110679
PMID:20231455	PMID:21070388	PMID:21127051	PMID:21572047	PMID:21700703	PMID:23049999	PMID:29476059

Genomics

Comparative Map Data

Slc1a6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	10,841,836 - 10,870,424 (-)	NCBI
Rnor_6.0 Ensembl	7	13,730,253 - 13,751,271 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	7	13,730,101 - 13,758,170 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	13,893,841 - 13,921,839 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	12,393,284 - 12,419,893 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	12,393,284 - 12,419,880 (-)	NCBI
Celera	7	8,958,917 - 8,988,056 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

SLC1A6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	14,950,034 - 15,022,990 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	14,950,033 - 15,010,643 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	15,060,845 - 15,121,455 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	14,921,991 - 14,944,730 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	19	14,921,990 - 14,944,730	NCBI
Celera	19	14,956,703 - 14,979,425 (-)	NCBI
Cytogenetic Map	19	p13.12	NCBI
HuRef	19	14,628,668 - 14,688,622 (-)	NCBI		HuRef
CHM1_1	19	15,060,322 - 15,120,899 (-)	NCBI		CHM1_1

Slc1a6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	78,615,923 - 78,650,659 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	10	78,616,330 - 78,650,599 (+)	Ensembl
GRCm38	10	78,780,086 - 78,814,825 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	78,780,496 - 78,814,765 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	78,243,241 - 78,277,570 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	10	78,183,631 - 78,217,894 (+)	NCBI			mm8
Celera	10	79,802,330 - 79,836,572 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Slc1a6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	8,289,734 - 8,314,874 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	8,270,601 - 8,314,874 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC1A6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	15,470,222 - 15,498,980 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	15,470,222 - 15,526,471 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	14,499,333 - 14,529,781 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SLC1A6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	47,133,237 - 47,143,512 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	47,097,593 - 47,143,512 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	46,976,526 - 46,993,225 (+)	NCBI
ROS_Cfam_1.0	20	47,618,429 - 47,635,339 (+)	NCBI
UMICH_Zoey_3.1	20	46,849,336 - 46,866,041 (+)	NCBI
UNSW_CanFamBas_1.0	20	47,267,243 - 47,284,105 (+)	NCBI
UU_Cfam_GSD_1.0	20	47,539,683 - 47,556,398 (+)	NCBI

Slc1a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_ltri_2	NW_024405118	205,914,191 - 205,929,855 (+)	NCBI
SpeTri2.0	NW_004936596	5,464,850 - 5,478,763 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC1A6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	62,601,758 - 62,623,371 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	62,601,763 - 62,623,597 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	62,160,514 - 62,181,952 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC1A6
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	13,537,902 - 13,567,333 (-)	NCBI
ChlSab1.1 Ensembl	6	13,538,064 - 13,558,959 (-)	Ensembl

Slc1a6
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624901	2,021,097 - 2,048,456 (-)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	12328467	67193263	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	34147172	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	37009673	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	12687850	67801690	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	5951969	50951969	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	12328467	106995532	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	2920071	124838025	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	2653138	32258115	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	38119654	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	5911477	50911477	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	11647102	56647102	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	34828535	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	34828535	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	9758045	54758045	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	151
Count of miRNA genes:	120
Interacting mature miRNAs:	128
Transcripts:	ENSRNOT00000009931
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									30
Low			7	7		7			42	6	29	3
Below cutoff	1	14	32	24	6	24	2	2	2	10	12	6	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_032065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY286330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U80915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U89608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000009931 ⟹ ENSRNOP00000009931

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	13,730,253 - 13,751,271 (-)	Ensembl

RefSeq Acc Id:

NM_032065 ⟹ NP_114454

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	10,841,836 - 10,870,424 (-)	NCBI
Rnor_6.0	7	13,730,101 - 13,758,099 (-)	NCBI
Rnor_5.0	7	13,893,841 - 13,921,839 (-)	NCBI
RGSC_v3.4	7	12,393,284 - 12,419,893 (-)	RGD
Celera	7	8,958,917 - 8,988,056 (-)	RGD

Sequence:

show sequence

GAATTCGGCACGAGCGCAGACACAGAGCGGGTCCCTGGCGGGTCCCTGCGGACCCGGCCAGGCG
CTTCCGCGGGTTCTGGCTTTTGCATCCCGGCGCAGCGCGCAGGCGGAGGCGCAGGCAAGGCGGC
CCCGCTGACCCGAGGCTGAGACGCGATGAGCAGCCACGGCAACAGTCTGTTCCTGAGGGAGAGC
GGCGCTGGCGGGGGCTGTCTGCAAGGCCTGCAGGACAGTCTGCAGCAGAGAGCACTGCGCACGC
GCTTGCGCCTGCAGACCATGACCCGAGAGCACGTGCGGCGCTTCCTGCGCCGAAATGCCTTCAT
CTTGCTCACAGTCAGCGCTGTGATCATTGGCGTCAGCCTGGCATTTGCCTTGCGCCCATATCAG
CTCACCTACCGCCAGATCAAGTACTTCTCTTTTCCTGGTGAGCTGCTCATGAGGATGCTGCAGA
TGCTGGTGCTACCCCTCATTGTCTCCAGCCGGGTCACAGGTATGGCATCCTTGGACAACAAGGC
AACAGGGAGGATGGGAATGAGGGCAGCTGTGTACTACATGGTGACGACCGTCATTGCAGTTTTC
ATCGGCATCCTAATGGTTACCATCATACATCCTGGGAAGGGCTCCAAGGAGGGGCTGCACCGTG
AGGGCCGAATTGAGACTGTTCCAACAGCTGATGCTTTCATGGACCTGGTCAGAAATATGTTTCC
ACCAAACCTTGTGGAGGCCTGCTTCAAACAGTTTAAAACACAGTACAGCACACGAGTGGTAACA
AGGACGATTGTAAGGACAGACAACGGGTCAGAGTTGGGGGCCTCCATTTCTCCTCCATCCTCAG
CAGAAAATGAAACCAGCATCCTGGAAAATGTCACCCGGGCCTTGGGCACCCTGCAGGAGGTGAT
AAGCTTTGAGGAGACTGTGCCTGTACCTGGCTCAGCTAATGGCATCAACGCTTTGGGCCTCGTG
GTCTTCTCTGTGGCCTTCGGGCTGGTCATCGGTGGCATGAAGCACAAAGGCCGTGTCCTGAGGG
ATTTCTTCGACAGCCTCAATGAGGCTATTATGAGGCTGGTGGGCATCATCATCTGGTATGCACC
AGTGGGCATCCTGTTCCTGATTGCTGGAAAGATTCTGGAAATGGAAGACATGGCTGTCCTTGGA
GGTCAGCTGGGCATGTACACGCTGACTGTCATTGTCGGCTTATTTCTTCATGCTGGTGGTGTGT
TACCCCTCATCTACTTCCTTGTCACACATCGGAACCCCTTTCCCTTCATCGGTGGTATACTACA
GGCACTCATCACAGCCATGGGTACCTCTTCCAGCTCTGCAACTCTGCCTATCACTTTCCGATGC
CTGGAGGAGGGCCTGGGTGTGGACCGCCGCATCACCAGATTCGTGTTGCCTGTGGGGGCCACTG
TCAACATGGACGGCACCGCGCTCTATGAGGCCTTGGCAGCCATCTTTATTGCTCAAGTCAACAA
CTATGAGCTGAACCTTGGTCAGATCACCACAATCAGCATCACAGCCACAGCTGCCAGCGTAGGA
GCAGCTGGCATCCCCCAGGCAGGACTGGTTACCATGGTGATTGTGCTCACGTCTGTCGGCCTGC
CCACAGAGGACATCACATTGATCATAGCTGTGGATTGGTTCCTTGATCGACTTCGTACGATGAC
CAATGTACTTGGGGACTCAATTGGAGCAGCTGTCATTGAGCATTTGTCCCAACGGGAGCTGGAG
CTGCAAGAGGCTGAGCTGACTCTACCCAGCCTGGGGAAACCCTATAAGTCACTCATGGCACAAG
CCAAGGGGGCATCAAGGGGTCGGGGAGGTAATGAGAGTGTCATGTGAGAAGCTTCTAGCTCTTT
GTCCAGGGCGGAGGGAAGGGGCTGGGAGGGGAGTCCTGGGGACAATCTGTTGCACAACTGACTG
TGGGCTGCACAAACATGTTCTGTGTGGGTTCTCTGGGGACTGCTGAGATAAAAGAGAAGGAATG
AAAGGTAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008765182 ⟹ XP_008763404

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	13,730,101 - 13,758,170 (-)	NCBI

Sequence:

show sequence

CGTGAGCTCAAGGCCAGCCCGCATTCCTCCGATTGCAAAGCGCATCCTTGCTCCGCGCGGCTAC
CTCTGTCTTCGGGTCCCCAACGCAGACACAGAGCGGGTCCCTGGCGGGTCCCTGCGGACCCGGC
CAGGCGCTTCCGCGTGTTCTGGCTTTTGCATCCCGGCGCAGCGCGCAGGCGGAGGCGCAGGCAA
GGCGGCCCCGCTGACCCGAGGCTGAGACGCGATGAGCAGCCACGGCAACAGTCTGTTCCTGAGG
GAGAGCGGCGCTGGCGGGGGCTGTCTGCAAGGCCTGCAGGACAGTCTGCAGCAGAGAGCACTGC
GCACGCGCTTGCGCCTGCAGACCATGACCCGAGAGCACGTGCGGCGCTTCCTGCGCCGAAATGC
CTTCATCTTGCTCACAGTCAGCGCTGTGATCATTGGCGTCAGCCTGGCATTTGCCTTGCGCCCA
TACCAGCTCTCCTACCGCCAGATCAAGTACTTCTCTTTTCCTGGTGAGCTGCTCATGAGGATGC
TGCAGATGCTGGTGCTACCCCTCATTGTCTCCAGCCTTGTCACAGGTATGGCATCCTTGGACAA
CAAGGCAACAGGGAGGATGGGAATGAGGGCAGCTGTGTACTACATGGTGACGACCGTCATTGCA
GTTTTCATCGGCATCCTAATGGTTACCATCATACATCCTGGGAAGGGCTCCAAGGAGGGGCTGC
ACCGTGAGGGCCGAATTGAGACTGTTCCAACAGCTGATGCTTTCATGGACCTGGTCAGAAATAT
GTTTCCACCAAACCTTGTGGAGGCCTGCTTCAAACAGTTTAAAACACAGTACAGCACACGAGTG
GTAACAAGGACGATTGTAAGGACAGACAACGGGTCAGAGTTGGGGGCCTCCATTTCTCCTCCAT
CCTCAGCAGAAAATGAAACCAGCATCCTGGAAAATGTCACCCGGGCCTTGGGCACCCTGCAGGA
GGTGATAAGCTTTGAGGAGACTGTGCCTGTACCTGGCTCAGCTAATGGCATCAACGCTTTGGGC
CTCGTGGTCTTCTCTGTGGCCTTCGGGCTGGTCATCGGTGGCATGAAGCACAAAGGCCGTGTCC
TGAGGGATTTCTTCGACAGCCTCAATGAGGCTATTATGAGGCTGGTGGGCATCATCATCTGGTA
TGCACCAGTGGGCATCCTGTTCCTGATTGCTGGAAAGATTCTGGAAATGGAAGACATGGCTGTC
CTTGGAGGTCAGCTGGGCATGTACACGCTGACTGTCATTGTCGGCTTATTTCTTCATGCTGGTG
GTGTGTTACCCCTCATCTACTTCCTTGTCACACATCGGAACCCCTTTCCCTTCATCGGTGGTAT
ACTACAGGCACTCATCACAGCCATGGGTACCTCTTCCAGCTCTGCAACTCTGCCTATCACTTTC
CGATGCCTGGAGGAGGGCCTGGGTGTGGACCGCCGCATCACCAGATTCGTGTTGCCTGTGGGGG
CCACTGTCAACATGGACGGCACCGCGCTCTATGAGGCCTTGGCAGCCATCTTTATTGCTCAAGT
CAACAACTATGAGCTGAACCTTGGTCAGATCACCACAATCAGCATCACAGCCACAGCTGCCAGC
GTAGGAGCAGCTGGCATCCCCCAGGCAGGACTGGTTACCATGGTGATTGTGCTCACATCCGTCG
GCCTGCCCACAGAGGACATCACATTGATCATAGCTGTGGATTGGTTCCTTGATCGACTTCGTAC
GATGACCAATGTACTTGGGGACTCAATTGGAGCAGCTGTCATTGAGCATTTGTCCCAACGGGAG
CTGGAGCTGCAAGAGGCTGAGCTGACTCTACCCAGCCTGGGGAAACCCTATAAGTCACTCATGG
CACAAGAAAAGGGGGCATCAAGGGGTCGGGGAGGTAATGAGAGTGTCATGTGAGAAGCTTCTAG
CTCTCTGTCCAGGGCGGAGGGAAGGGGCTGGGAGGGGAGTCCTGGGGACAATCTGTTGCACAAC
TGACTGTGGGCTGCACATACATGTTCTGTGTGGGTTCTCTGGGGACTGCTGAGATAAAAGAGAA
GGAATGAAAGGTA

hide sequence

RefSeq Acc Id:

XM_039079957 ⟹ XP_038935885

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	10,841,836 - 10,863,624 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_114454	(Get FASTA)	NCBI Sequence Viewer
	XP_038935885	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB40997	(Get FASTA)	NCBI Sequence Viewer
	AAB72086	(Get FASTA)	NCBI Sequence Viewer
	AAH98912	(Get FASTA)	NCBI Sequence Viewer
	AAP37181	(Get FASTA)	NCBI Sequence Viewer
	EDL89444	(Get FASTA)	NCBI Sequence Viewer
	O35921	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_114454 ⟸ NM_032065

- Sequence:

show sequence

MSSHGNSLFLRESGAGGGCLQGLQDSLQQRALRTRLRLQTMTREHVRRFLRRNAFILLTVSAVI
IGVSLAFALRPYQLTYRQIKYFSFPGELLMRMLQMLVLPLIVSSRVTGMASLDNKATGRMGMRA
AVYYMVTTVIAVFIGILMVTIIHPGKGSKEGLHREGRIETVPTADAFMDLVRNMFPPNLVEACF
KQFKTQYSTRVVTRTIVRTDNGSELGASISPPSSAENETSILENVTRALGTLQEVISFEETVPV
PGSANGINALGLVVFSVAFGLVIGGMKHKGRVLRDFFDSLNEAIMRLVGIIIWYAPVGILFLIA
GKILEMEDMAVLGGQLGMYTLTVIVGLFLHAGGVLPLIYFLVTHRNPFPFIGGILQALITAMGT
SSSSATLPITFRCLEEGLGVDRRITRFVLPVGATVNMDGTALYEALAAIFIAQVNNYELNLGQI
TTISITATAASVGAAGIPQAGLVTMVIVLTSVGLPTEDITLIIAVDWFLDRLRTMTNVLGDSIG
AAVIEHLSQRELELQEAELTLPSLGKPYKSLMAQAKGASRGRGGNESVM

hide sequence

RefSeq Acc Id:

XP_008763404 ⟸ XM_008765182

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSSHGNSLFLRESGAGGGCLQGLQDSLQQRALRTRLRLQTMTREHVRRFLRRNAFILLTVSAVI
IGVSLAFALRPYQLSYRQIKYFSFPGELLMRMLQMLVLPLIVSSLVTGMASLDNKATGRMGMRA
AVYYMVTTVIAVFIGILMVTIIHPGKGSKEGLHREGRIETVPTADAFMDLVRNMFPPNLVEACF
KQFKTQYSTRVVTRTIVRTDNGSELGASISPPSSAENETSILENVTRALGTLQEVISFEETVPV
PGSANGINALGLVVFSVAFGLVIGGMKHKGRVLRDFFDSLNEAIMRLVGIIIWYAPVGILFLIA
GKILEMEDMAVLGGQLGMYTLTVIVGLFLHAGGVLPLIYFLVTHRNPFPFIGGILQALITAMGT
SSSSATLPITFRCLEEGLGVDRRITRFVLPVGATVNMDGTALYEALAAIFIAQVNNYELNLGQI
TTISITATAASVGAAGIPQAGLVTMVIVLTSVGLPTEDITLIIAVDWFLDRLRTMTNVLGDSIG
AAVIEHLSQRELELQEAELTLPSLGKPYKSLMAQEKGASRGRGGNESVM

hide sequence

RefSeq Acc Id:

ENSRNOP00000009931 ⟸ ENSRNOT00000009931

RefSeq Acc Id:	XP_038935885 ⟸ XM_039079957
- Peptide Label:	isoform X1

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620340	AgrOrtholog
Ensembl Genes	ENSRNOG00000007509	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000009931	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009931	UniProtKB/TrEMBL
Gene3D-CATH	1.10.3860.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7315936	IMAGE-MGC_LOAD
InterPro	Na-dicarboxylate_symporter	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Na-dicarboxylate_symporter_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Na:dicarbo_symporter_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:84012	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114297	IMAGE-MGC_LOAD
NCBI Gene	84012	ENTREZGENE
Pfam	SDF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc1a6	PhenoGen
PROSITE	NA_DICARBOXYL_SYMP_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NA_DICARBOXYL_SYMP_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF118215	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	EAA4_RAT	UniProtKB/Swiss-Prot
	F1LR26_RAT	UniProtKB/TrEMBL
	O35921	ENTREZGENE
	Q7TSX6_RAT	UniProtKB/TrEMBL
UniProt Secondary	P97683	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-25	Slc1a6	solute carrier family 1 member 6	Slc1a6	solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Slc1a6	solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Slc1a6	solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - KEGG (archival)