Or6c1f-ps1 (olfactory receptor family 6 subfamily C member 1F, pseudogene 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Or6c1f-ps1 (olfactory receptor family 6 subfamily C member 1F, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Or6c1f-ps1
Name: olfactory receptor family 6 subfamily C member 1F, pseudogene 1
RGD ID: 1333822
Description: olfactory receptor pseudogene
Type: pseudo (Ensembl: pseudogene)
RefSeq Status: REVIEWED
Previously known as: ENSRNOG00000068119; olfactory receptor pseudogene 884; Olr884-ps
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr873,216,919 - 3,217,856 (-)NCBIGRCr8
mRatBN7.272,559,458 - 2,560,395 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl72,559,458 - 2,560,395 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl72,559,458 - 2,560,395 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx75,415,118 - 5,416,055 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07133,563 - 134,500 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.077,574,576 - 7,575,513 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.075,786,607 - 5,787,544 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.075,893,584 - 5,894,521 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.472,809,362 - 2,810,299 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.172,809,261 - 2,810,399 (+)NCBI
Celera711,532,860 - 11,533,798 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.

Genomics

Variants

.
Variants in Or6c1f-ps1
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_003629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000100082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl72,559,458 - 2,560,395 (-)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35280 BioCyc
Ensembl Genes ENSRNOG00000068119 Ensembl
NCBI Gene 405279 ENTREZGENE
PhenoGen Or6c1f-ps1 PhenoGen
RatGTEx ENSRNOG00000068119 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or6c1f-ps1  olfactory receptor family 6 subfamily C member 1F, pseudogene 1  Olr884-ps  olfactory receptor pseudogene 884  Symbol and Name Changed 1299863 APPROVED
2022-06-02 Olr884-ps  olfactory receptor pseudogene 884  ENSRNOG00000068119    Data merged from RGD:150345774 737654 PROVISIONAL
2021-08-31 ENSRNOG00000068119        Symbol and Name status set to provisional 45752 PROVISIONAL
2005-02-04 Olr884-ps  olfactory receptor pseudogene 884      Symbol and Name status set to approved 70820 APPROVED