Rab5b (RAB5B, member RAS oncogene family)

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Gene: Rab5b (RAB5B, member RAS oncogene family) Rattus norvegicus

Analyze

Symbol:

Rab5b

Name:

RAB5B, member RAS oncogene family

RGD ID:

1306489

Description:

Predicted to enable GDP binding activity; GTP-dependent protein binding activity; and GTPase activity. Predicted to be involved in antigen processing and presentation and plasma membrane to endosome transport. Predicted to act upstream of or within endosome organization and regulation of endocytosis. Is active in synaptic vesicle membrane. Orthologous to human RAB5B (RAB5B, member RAS oncogene family); PARTICIPATES IN endocytosis pathway; Entamoebiasis pathway; phagocytosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC288779; ras-related protein Rab-5B

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAB5B (RAB5B, member RAS oncogene family)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rab5b (RAB5B, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rab5b (RAB5B, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAB5B (RAB5B, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAB5B (RAB5B, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rab5b (RAB5B, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAB5B (RAB5B, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAB5B (RAB5B, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rab5b (RAB5B, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TSKS (testis specific serine kinase substrate)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RAB5B (RAB5B, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rab5b (RAB5B, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rab-5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rab5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	VPS21	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YPT52	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA)
Saccharomyces cerevisiae (baker's yeast):	YPT53	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rab5b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	1,109,449 - 1,128,348 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	1,109,454 - 1,128,268 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	3,872,624 - 3,891,374 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,748,296 - 5,767,046 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	6,045,368 - 6,063,861 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	3,104,530 - 3,123,384 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	3,104,551 - 3,123,297 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	3,077,228 - 3,096,075 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	1,979,776 - 1,998,540 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	1,980,577 - 1,998,878 (-)	NCBI
Celera	7	979,663 - 998,427 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Pulmonary Surfactant Metabolism Dysfunction 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

chlordecone (ISO)

choline (ISO)

cisplatin (ISO)

cytarabine (ISO)

dexamethasone (ISO)

diquat (ISO)

diuron (EXP)

fluvastatin (ISO)

folic acid (ISO)

glyphosate (ISO)

hexane (EXP)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

leflunomide (ISO)

methapyrilene (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel dichloride (ISO)

paracetamol (EXP)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

potassium dichromate (ISO)

resveratrol (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antigen processing and presentation (ISO)

endocytosis (IBA)

endosome organization (ISO)

intracellular protein transport (IBA)

plasma membrane to endosome transport (ISO)

regulation of endocytosis (IBA,ISO)

Cellular Component

early endosome (IBA)

endocytic vesicle (IBA,ISO)

endomembrane system (IBA)

endosome (ISO)

extracellular exosome (ISO)

intracellular membrane-bounded organelle (ISO)

plasma membrane (IBA)

synaptic vesicle membrane (EXP,IDA)

Molecular Function

GDP binding (ISO)

GTP binding (IEA)

GTP-dependent protein binding (ISO)

GTPase activity (IBA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

endocytosis pathway (IEA)

Entamoebiasis pathway (IEA)

phagocytosis pathway (IEA)

tuberculosis pathway (IEA)

vasopressin signaling pathway via receptor type 2 (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Quantitative analysis of synaptic vesicle Rabs uncovers distinct yet overlapping roles for Rab3a and Rab27b in Ca2+-triggered exocytosis.	Pavlos NJ, etal., J Neurosci. 2010 Oct 6;30(40):13441-53. doi: 10.1523/JNEUROSCI.0907-10.2010.
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7789520	PMID:10491193	PMID:11432782	PMID:12477932	PMID:15326289	PMID:17562788	PMID:18445495	PMID:18504258	PMID:19056867	PMID:19717423	PMID:20458337	PMID:20937701
PMID:23533145	PMID:25002582

Genomics

Comparative Map Data

Rab5b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	1,109,449 - 1,128,348 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	1,109,454 - 1,128,268 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	3,872,624 - 3,891,374 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,748,296 - 5,767,046 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	6,045,368 - 6,063,861 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	3,104,530 - 3,123,384 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	3,104,551 - 3,123,297 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	3,077,228 - 3,096,075 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	1,979,776 - 1,998,540 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	1,980,577 - 1,998,878 (-)	NCBI
Celera	7	979,663 - 998,427 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

RAB5B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	55,973,949 - 55,996,683 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	55,973,913 - 55,996,683 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	56,367,733 - 56,390,467 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	54,654,129 - 54,674,757 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	54,654,128 - 54,674,753	NCBI
Celera	12	56,020,546 - 56,041,174 (+)	NCBI		Celera
Cytogenetic Map	12	q13.2	NCBI
HuRef	12	53,406,584 - 53,429,353 (+)	NCBI		HuRef
CHM1_1	12	56,334,808 - 56,357,578 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	55,941,012 - 55,963,746 (+)	NCBI		T2T-CHM13v2.0

Rab5b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	128,511,980 - 128,532,160 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	128,513,044 - 128,532,133 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	128,677,170 - 128,696,284 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	128,677,175 - 128,696,264 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	128,114,235 - 128,133,324 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	128,080,826 - 128,099,213 (-)	NCBI		MGSCv36	mm8
Celera	10	131,069,284 - 131,088,400 (-)	NCBI		Celera
Cytogenetic Map	10	D3	NCBI
cM Map	10	77.13	NCBI

Rab5b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	3,576,247 - 3,580,192 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	3,563,363 - 3,582,620 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAB5B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	12	38,329,770 - 38,352,483 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	32,916,314 - 32,939,047 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	33,168,248 - 33,188,865 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	33,168,254 - 33,188,676 (-)	Ensembl	panpan1.1		panPan2

RAB5B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	307,693 - 325,766 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	320,366 - 323,844 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	369,626 - 387,933 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	314,513 - 332,609 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	314,547 - 332,362 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	292,317 - 310,622 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	535,089 - 553,175 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	659,367 - 677,675 (+)	NCBI		UU_Cfam_GSD_1.0

Rab5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	58,461,972 - 58,483,266 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936646	386,833 - 410,192 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936646	386,958 - 408,265 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB5B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	21,387,250 - 21,389,745 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	21,373,333 - 21,392,729 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RAB5B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	51,912,417 - 51,933,862 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	51,926,016 - 51,931,356 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	194,051,372 - 194,074,986 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rab5b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624802	12,059,503 - 12,066,296 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624802	12,058,916 - 12,065,177 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rab5b
90 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	355
Count of miRNA genes:	201
Interacting mature miRNAs:	256
Transcripts:	ENSRNOT00000061878
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	27829089	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	31962314	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	31962314	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34000259	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	35342956	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	664270	26029351	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat

Markers in Region

RH129759

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	1,110,779 - 1,110,942 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	3,105,859 - 3,106,020	NCBI	Rnor6.0
Rnor_5.0	7	3,078,559 - 3,078,720	UniSTS	Rnor5.0
RGSC_v3.4	7	1,981,102 - 1,981,263	UniSTS	RGSC3.4
Celera	7	980,989 - 981,150	UniSTS
Cytogenetic Map	7	q11	UniSTS

RH132933

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	1,129,935 - 1,130,155 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	3,125,011 - 3,125,230	NCBI	Rnor6.0
Rnor_5.0	7	3,097,711 - 3,097,930	UniSTS	Rnor5.0
RGSC_v3.4	7	2,000,254 - 2,000,473	UniSTS	RGSC3.4
Celera	7	1,000,141 - 1,000,360	UniSTS
Cytogenetic Map	7	q11	UniSTS

RH143244

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	1,127,589 - 1,127,699 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	3,122,665 - 3,122,774	NCBI	Rnor6.0
Rnor_5.0	7	3,095,365 - 3,095,474	UniSTS	Rnor5.0
RGSC_v3.4	7	1,997,908 - 1,998,017	UniSTS	RGSC3.4
Celera	7	997,795 - 997,904	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001079936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC093595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC129101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000061878 ⟹ ENSRNOP00000058595

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	1,109,454 - 1,128,268 (-)	Ensembl
Rnor_6.0 Ensembl	7	3,104,551 - 3,123,297 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099796 ⟹ ENSRNOP00000079594

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	1,109,459 - 1,119,940 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000120020 ⟹ ENSRNOP00000092616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	1,109,468 - 1,119,561 (-)	Ensembl

RefSeq Acc Id:

NM_001079936 ⟹ NP_001073405

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	1,109,454 - 1,128,222 (-)	NCBI
Rnor_6.0	7	3,104,533 - 3,123,297 (-)	NCBI
Rnor_5.0	7	3,077,228 - 3,096,075 (-)	NCBI
RGSC_v3.4	7	1,979,776 - 1,998,540 (-)	RGD
Celera	7	979,663 - 998,427 (-)	RGD

Sequence:

show sequence

CGGAGCCCCAGGTACCGAGCTGATGGAGCCCACAAGGGCAGAGGCGGAGGTCCCGAGAGGAGCG
CAGCCTTGCCTGCGGCAGAGGCGGGTCGGGCCGACGCCAGGGCTCGAGAGCCTCCTGGAGCGGG
CAAAAGGGGCTGTCCCGCAGGCCTAGTGGGCGCCGAGGAGGACTGTTGAGGCCTGGAAGTCCCT
CCCTTTCCCCTCCCCCCTTTGCCAATTTGTGGCATTCCCCTCCCTCTACCTTCTCCTACTTTGA
TAACCTGGCTATGACTAGCAGAAGTACAGCCAGGCCCAATGGGCAGCCCCAGGCCAGCAAAATA
TGCCAGTTCAAATTGGTCCTGCTGGGAGAATCTGCAGTGGGGAAGTCGAGCCTGGTGTTACGTT
TTGTCAAAGGACAGTTCCATGAATACCAGGAAAGTACCATTGGAGCGGCCTTCCTCACCCAGTC
GGTGTGTCTAGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGGCAGGAACGATAC
CACAGTTTAGCCCCCATGTACTACAGGGGTGCCCAGGCTGCCATCGTGGTCTATGATATCACTA
ATCAGGAAACGTTTGCCCGGGCAAAGACATGGGTAAAGGAACTACAGCGGCAAGCCAGCCCTAG
CATCGTCATTGCCTTGGCAGGGAACAAAGCTGACCTTGCCAACAAGCGCATGGTGGAGTATGAA
GAGGCTCAGGCATATGCAGATGACAACAGCTTATTATTTATGGAGACTTCAGCTAAGACTGCTA
TGAACGTGAATGATCTCTTCCTGGCAATAGCAAAGAAGTTGCCAAAGAGTGAACCCCAGAATCC
AGGGGGTGCAGCAGGCCGAAGTCGGGGCGTGGATCTTCATGAGCAGGCCCAGCAGAACAAGAGC
CAGTGTTGTAGCAACTGAGGGAGGGGTGGCTAGCAGCAAATACGTATGGAATTAGCACGAAAGC
TAAGACATAACCTCCATCCCCGCCCCTCAGCACACAGCCCCTACGGTGACAGCACACTGAGCCC
TGGCTCCCAAGGGCTGCCTCCTGACAGCTCCGTCATGGCACTTTTTAATGCTTCAGCAACCAAC
ACCAGGCAGCTGTTGCCACTACTATGCCCTACTCTGGGGCTTGGGGTCAAATCTCCCCAGGACC
TTCCTTCCAAAACAAACTTTCTTTACTTCATGTTCTCGGTGCAAGACAGTGACTTCCTCATTGT
CCCATCACCCCCCACCCCTTCCCCTCCATGTTTTCCCAGTGTTTCAGAGAAGACTTTTGTCTCC
TGCCTCCCTCTCCCACCTCTCAGCACTCCCTCCTCTAGATCCTGTTTCCTCCTCTTTACAAGAT
GATGAAGGGTATTCCCAGGTACTGAGAAGGGAGGAATATACTTTTAGTTACATTAAAAACCTTG
CCGGGAGAGTAAGGCTCAGAGCAGGAGGGAGTAAGGAAACATTTCCTTTCATTTTATCTGGTGA
GAGTTTCTTGTCTATGAAACACTGCGGCACCAATCAGTGGACTTGTGGAGGGTGTCCTAGGTAG
GAGTGAGATCGGGGAGGTGAGCTCGCAGGCACTGAATGGAGTTTATTAGTTAATAGGACACAGA
TGGAGATGCAGTGTCATCTGTGGCTCTAACTCGTCCCAAGGCTGCTTTCCTTCTTGTCCCCATC
CACTAACCCCACCGAGTGTGGGGATTGGACCTCAGAGTGCTCCAAAGAATCTTCACTGGTTGCC
TGCACCCTTAGTCTGCTGTGATCTAATTGGAGGAGGTACCAGTCTCTGATGCCGTCCTCTGAAG
CCTGTGTATACATAGGCATTTCCCTACCCTGGCCTTGAGATGGCCTTAACCCCAGACACCATGC
CCCTGCAGTTTGCACTTTAATTGATGGTAGTTCAGTCAAGATACATGTTTTTCTTGGGGGGGGG
GGTGATTGATTTACCTATCCTTCAACCTTTTTAATTAAATGGAATCTACAATGAATGAGGTTTG
GAGAGGCCCTATAGACAACAGTCACAGTGGCAGCTACTCACACCCAGTGTCCACTGCTAGCTTC
CTCTGACTGATTCACACCTCTATTCTTGGGTATAGGTTTGTCTGAGCAACTGGGGAGTGGCCTC
AGAGTAGCACGGGCCATGGTGGTGGAGTAAAGAAAGGTCAGGAAAAGGGAGTGCTCTATCTTCC
CAGGGTTCACATTCGATTTGCTACGTCTTACCATGTCTTTTCTACTTCCCTGTAAATACGTGTA
AGTCTTGATTCTCTGTACAGTCAGTTCTGCCTCCTGGTTCCCATTAGCCCCCTTTTCTTCTCCC
TTTTGTTAATATCTTGGGTTTAGTTCCTCCTTCATTCCCCCACTCACTCTTACTTAATCCATGT
ACCACTAGAGGCTCCTCCCACAGAGGCCGTTTGTCCAGTGACAGGGCAACTAGAACTGAAGGTG
CCTCACAGCTGCCTTGTATCATCAGAGGGCCTTGGTCCTTTCTGAATCTCTGGCTTCTCTACAT
CCTACATTAGATGTTTGAGGGTGTCTGTGAGAAGCCATCAAAGCAAGAAGGAATTTGATATTTC
AGCCAGAGTTTGGGGGTAATTTTCAGAAGAAAGGAAAGACCACAGTAGCCTAGAGTTGAGCCTT
TCTGCCCCTTTGGCTTAGACACTGACTTGTATTCCAGCTGAGGAATCCATGAAGCCAAGATTCT
CAAGGACCCAACTTAGGTTCTTCCACTTAGAACTCAATTCTCTTCCTTTTCCAGGGGCAGCCTT
AGTTCTCACGGCCCTGAAACATACATATTTACTTTTCTAGAACCTGTTCATCTGCAAAACACCC
AGGCACATCCTTTTTGCAAGTGGAGACTCTGAGTGAAGCTCTCTAAGTCTCTTAGGGACTTAAC
TCCTTCTCTGCAAAAATGAAGATGTTTTATTGCCTTGGGGCTGGGAAGCCATCTCCCAGGCTTT
CACTTCCTCCCTTCCTCCCTTCTTAGGAACAGTATTGGCCTTAGTTCCGGGGCCTGTCTGCTGC
CTTCCCTCTCCTCCTGCCAGCTCTTCTGCCTTTGTTTGAGCTCTGTTGGGCTTGAGGGGTTTGG
TTCTCTCCCCACCTCCCTGTCACCCTTTTTCTTCTGATCAGTTTTTAGGGGAGGGCTCATCTTT
TCTGCCTTTATATTTTTTTTCCTAAGAAAGTGTTTGCCTTTCTTTCACTCTCCTAACATAACAA
TCGTGGTAACAGAATGCAACTGCTGATTTATCGATGTATTTAATGTAAGTAAAAAAGGAAAAAA
GAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006240750 ⟹ XP_006240812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	1,109,449 - 1,128,348 (-)	NCBI
Rnor_6.0	7	3,104,530 - 3,123,384 (-)	NCBI
Rnor_5.0	7	3,077,228 - 3,096,075 (-)	NCBI

Sequence:

show sequence

GGAGGAGGAGGAGGCGAAGGGGGCAGGAGTTTGGTTGAGCTGCAGCTGTTTGTCTGTTCCACAC
AGGCTTGGGCCCGACGGGGGAGACGGAGCCCCAGGACTGTTGAGGCCTGGAAGTCCCTCCCTTT
CCCCTCCCCCCTTTGCCAATTTGTGGCATTCCCCTCCCTCTACCTTCTCCTACTTTGATAACCT
GGCTATGACTAGCAGAAGTACAGCCAGGCCCAATGGGCAGCCCCAGGCCAGCAAAATATGCCAG
TTCAAATTGGTCCTGCTGGGAGAATCTGCAGTGGGGAAGTCGAGCCTGGTGTTACGTTTTGTCA
AAGGACAGTTCCATGAATACCAGGAAAGTACCATTGGAGCGGCCTTCCTCACCCAGTCGGTGTG
TCTAGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGGCAGGAACGATACCACAGT
TTAGCCCCCATGTACTACAGGGGTGCCCAGGCTGCCATCGTGGTCTATGATATCACTAATCAGG
AAACGTTTGCCCGGGCAAAGACATGGGTAAAGGAACTACAGCGGCAAGCCAGCCCTAGCATCGT
CATTGCCTTGGCAGGGAACAAAGCTGACCTTGCCAACAAGCGCATGGTGGAGTATGAAGAGGCT
CAGGCATATGCAGATGACAACAGCTTATTATTTATGGAGACTTCAGCTAAGACTGCTATGAACG
TGAATGATCTCTTCCTGGCAATAGCAAAGAAGTTGCCAAAGAGTGAACCCCAGAATCCAGGGGG
TGCAGCAGGCCGAAGTCGGGGCGTGGATCTTCATGAGCAGGCCCAGCAGAACAAGAGCCAGTGT
TGTAGCAACTGAGGGAGGGGTGGCTAGCAGCAAATACGTATGGAATTAGCACGAAAGCTAAGAC
ATAACCTCCATCCCCGCCCCTCAGCACACAGCCCCTACGGTGACAGCACACTGAGCCCTGGCTC
CCAAGGGCTGCCTCCTGACAGCTCCGTCATGGCACTTTTTAATGCTTCAGCAACCAACACCAGG
CAGCTGTTGCCACTACTATGCCCTACTCTGGGGCTTGGGGTCAAATCTCCCCAGGACCTTCCTT
CCAAAACAAACTTTCTTTACTTCATGTTCTCGGTGCAAGACAGTGACTTCCTCATTGTCCCATC
ACCCCCCACCCCTTCCCCTCCATGTTTTCCCAGTGTTTCAGAGAAGACTTTTGTCTCCTGCCTC
CCTCTCCCACCTCTCAGCACTCCCTCCTCTAGATCCTGTTTCCTCCTCTTTACAAGATGATGAA
GGGTATTCCCAGGTACTGAGAAGGGAGGAATATACTTTTAGTTACATTAAAAACCTTGCCGGGA
GAGTAAGGCTCAGAGCAGGAGGGAGTAAGGAAACATTTCCTTTCATTTTATCTGGTGAGAGTTT
CTTGTCTATGAAACACTGCGGCACCAATCAGTGGACTTGTGGAGGGTGTCCTAGGTAGGAGTGA
GATCGGGGAGGTGAGCTCGCAGGCACTGAATGGAGTTTATTAGTTAATAGGACACAGATGGAGA
TGCAGTGTCATCTGTGGCTCTAACTCGTCCCAAGGCTGCTTTCCTTCTTGTCCCCATCCACTAA
CCCCACCGAGTGTGGGGATTGGACCTCAGAGTGCTCCAAAGAATCTTCACTGGTTGCCTGCACC
CTTAGTCTGCTGTGATCTAATTGGAGGAGGTACCAGTCTCTGATGCCGTCCTCTGAAGCCTGTG
TATACATAGGCATTTCCCTACCCTGGCCTTGAGATGGCCTTAACCCCAGACACCATGCCCCTGC
AGTTTGCACTTTAATTGATGGTAGTTCAGTCAAGATACATGTTTTTCTTGGGGGGGGGGGTGAT
TGATTTACCTATCCTTCAACCTTTTTAATTAAATGGAATCTACAATGAATGAGGTTTGGAGAGG
CCCTATAGACAACAGTCACAGTGGCAGCTACTCACACCCAGTGTCCACTGCTAGCTTCCTCTGA
CTGATTCACACCTCTATTCTTGGGTATAGGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATA
GCACGGGCCATGGTAGTGGAGTAAAGAAAGGTCAGGAAAAGGGAGTGCTCTATCTTCCCAGGGT
TCACATTCGATTTGCTACGTCTTACCATGTCTTTTCTACTTCCCTGTAAATACGTGTAAGTCTT
GATTCTCTGTACAGTCAGTTCTGCCTCCTGGTTCCCATTAGCCCCCTTTTCTTCTCCCTTTTGT
TAATATCTTGGGTTTAGTTCCTCCTTCATTCCCCCACTCACTCTTACTTAATCCATGTACCACT
AGAGGCTCCTCCCACAGAGGCCGTTTGTCCAGTGACAGGGCAACTAGAACTGAAGGTGCCTCAC
AGCTGCCTTGTATCATCAGAGGGCCTTGGTCCTTTCTGAATCTCTGGCTTCTCTACATCCTACA
TTAGATGTTTGAGGGTGTCTGTGAGAAGCCATCAAAGCAAGAAGGAATTTGATATTTCAGCCAG
AGTTTGGGGGTAATTTTCAGAAGAAAGGAAAGACCACAGTAGCCTAGAGTTGAGCCTTTCTGCC
CCTTTGGCTTAGACACTGACTTGTATTCCAGCTGAGGAATCCATGAAGCCAAGATTCTCAAGGA
CCCAACTTAGGTTCTTCCACTTAGAACTCAATTCTCTTCCTTTTCCAGGGGCAGCCTTAGTTCT
CACGGCCCTGAAACATACATATTTACTTTTCTAGAACCTGTTCATCTGCAAAACACCCAGGCAC
ATCCTTTTTGCAAGTGGAGACTCTGAGTGAAGCTCTCTAAGTCTCTTAGAAACTTAACTCCTTC
TCTGCAAAAATGAAGATGTTTTATTGCCTTGGGGCTGGGAAGCCATCTCCCAGGCTTTCACTTC
CTCCCTTCCTCCCTTCTTAGGAACAGTATTGGCCTTAGTTCCGGGGCCTGTCTGCTGCCTTCCC
TCTCCTCCTGCCAGCTCTTCTGCCTTTGTTTGAGCTCTGTTGGGCTTGAGGGGTTTGGTTCTCT
CCCCACCTCCCTGTCACCCTTTTTCTTCTGATCAGTTTTTAGGGGAGGGCTCATCTTTTCTGCC
TTTATATTTTTTTTCCTAAGAAAGTGTTTGCCTTTCTTTCACTCTCCTAACATAACAATCGTGG
TAACAGAATGCAACTGCTGATTTATCGATGTATTTAATGTAAGTAAAAAAGGAAAAAAGAAAGT
G

hide sequence

RefSeq Acc Id:

XM_006240751 ⟹ XP_006240813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	1,109,449 - 1,128,325 (-)	NCBI
Rnor_6.0	7	3,104,530 - 3,123,372 (-)	NCBI
Rnor_5.0	7	3,077,228 - 3,096,075 (-)	NCBI

Sequence:

show sequence

GGCGAAGGGGGCAGGAGTTTGGTTGAGCTGCAGCTGTTTGTCTGTTCCACACAGGCTTGGGCCC
GACGGGGGAGACGGAGCCCCAGCCTCCTGAAGGCTGGTTGCAGATACACAGCACCACAGTTGCC
CAGAACCAGTTCTTTGGCTATCTACCACACTTACTGAAGGCCAGCTGTGTAGGAGCTTGTCAGA
AGGGACTGTTGAGGCCTGGAAGTCCCTCCCTTTCCCCTCCCCCCTTTGCCAATTTGTGGCATTC
CCCTCCCTCTACCTTCTCCTACTTTGATAACCTGGCTATGACTAGCAGAAGTACAGCCAGGCCC
AATGGGCAGCCCCAGGCCAGCAAAATATGCCAGTTCAAATTGGTCCTGCTGGGAGAATCTGCAG
TGGGGAAGTCGAGCCTGGTGTTACGTTTTGTCAAAGGACAGTTCCATGAATACCAGGAAAGTAC
CATTGGAGCGGCCTTCCTCACCCAGTCGGTGTGTCTAGATGACACAACAGTCAAGTTTGAGATC
TGGGACACAGCTGGGCAGGAACGATACCACAGTTTAGCCCCCATGTACTACAGGGGTGCCCAGG
CTGCCATCGTGGTCTATGATATCACTAATCAGGAAACGTTTGCCCGGGCAAAGACATGGGTAAA
GGAACTACAGCGGCAAGCCAGCCCTAGCATCGTCATTGCCTTGGCAGGGAACAAAGCTGACCTT
GCCAACAAGCGCATGGTGGAGTATGAAGAGGCTCAGGCATATGCAGATGACAACAGCTTATTAT
TTATGGAGACTTCAGCTAAGACTGCTATGAACGTGAATGATCTCTTCCTGGCAATAGCAAAGAA
GTTGCCAAAGAGTGAACCCCAGAATCCAGGGGGTGCAGCAGGCCGAAGTCGGGGCGTGGATCTT
CATGAGCAGGCCCAGCAGAACAAGAGCCAGTGTTGTAGCAACTGAGGGAGGGGTGGCTAGCAGC
AAATACGTATGGAATTAGCACGAAAGCTAAGACATAACCTCCATCCCCGCCCCTCAGCACACAG
CCCCTACGGTGACAGCACACTGAGCCCTGGCTCCCAAGGGCTGCCTCCTGACAGCTCCGTCATG
GCACTTTTTAATGCTTCAGCAACCAACACCAGGCAGCTGTTGCCACTACTATGCCCTACTCTGG
GGCTTGGGGTCAAATCTCCCCAGGACCTTCCTTCCAAAACAAACTTTCTTTACTTCATGTTCTC
GGTGCAAGACAGTGACTTCCTCATTGTCCCATCACCCCCCACCCCTTCCCCTCCATGTTTTCCC
AGTGTTTCAGAGAAGACTTTTGTCTCCTGCCTCCCTCTCCCACCTCTCAGCACTCCCTCCTCTA
GATCCTGTTTCCTCCTCTTTACAAGATGATGAAGGGTATTCCCAGGTACTGAGAAGGGAGGAAT
ATACTTTTAGTTACATTAAAAACCTTGCCGGGAGAGTAAGGCTCAGAGCAGGAGGGAGTAAGGA
AACATTTCCTTTCATTTTATCTGGTGAGAGTTTCTTGTCTATGAAACACTGCGGCACCAATCAG
TGGACTTGTGGAGGGTGTCCTAGGTAGGAGTGAGATCGGGGAGGTGAGCTCGCAGGCACTGAAT
GGAGTTTATTAGTTAATAGGACACAGATGGAGATGCAGTGTCATCTGTGGCTCTAACTCGTCCC
AAGGCTGCTTTCCTTCTTGTCCCCATCCACTAACCCCACCGAGTGTGGGGATTGGACCTCAGAG
TGCTCCAAAGAATCTTCACTGGTTGCCTGCACCCTTAGTCTGCTGTGATCTAATTGGAGGAGGT
ACCAGTCTCTGATGCCGTCCTCTGAAGCCTGTGTATACATAGGCATTTCCCTACCCTGGCCTTG
AGATGGCCTTAACCCCAGACACCATGCCCCTGCAGTTTGCACTTTAATTGATGGTAGTTCAGTC
AAGATACATGTTTTTCTTGGGGGGGGGGGTGATTGATTTACCTATCCTTCAACCTTTTTAATTA
AATGGAATCTACAATGAATGAGGTTTGGAGAGGCCCTATAGACAACAGTCACAGTGGCAGCTAC
TCACACCCAGTGTCCACTGCTAGCTTCCTCTGACTGATTCACACCTCTATTCTTGGGTATAGGT
TTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCACGGGCCATGGTAGTGGAGTAAAGAAAGG
TCAGGAAAAGGGAGTGCTCTATCTTCCCAGGGTTCACATTCGATTTGCTACGTCTTACCATGTC
TTTTCTACTTCCCTGTAAATACGTGTAAGTCTTGATTCTCTGTACAGTCAGTTCTGCCTCCTGG
TTCCCATTAGCCCCCTTTTCTTCTCCCTTTTGTTAATATCTTGGGTTTAGTTCCTCCTTCATTC
CCCCACTCACTCTTACTTAATCCATGTACCACTAGAGGCTCCTCCCACAGAGGCCGTTTGTCCA
GTGACAGGGCAACTAGAACTGAAGGTGCCTCACAGCTGCCTTGTATCATCAGAGGGCCTTGGTC
CTTTCTGAATCTCTGGCTTCTCTACATCCTACATTAGATGTTTGAGGGTGTCTGTGAGAAGCCA
TCAAAGCAAGAAGGAATTTGATATTTCAGCCAGAGTTTGGGGGTAATTTTCAGAAGAAAGGAAA
GACCACAGTAGCCTAGAGTTGAGCCTTTCTGCCCCTTTGGCTTAGACACTGACTTGTATTCCAG
CTGAGGAATCCATGAAGCCAAGATTCTCAAGGACCCAACTTAGGTTCTTCCACTTAGAACTCAA
TTCTCTTCCTTTTCCAGGGGCAGCCTTAGTTCTCACGGCCCTGAAACATACATATTTACTTTTC
TAGAACCTGTTCATCTGCAAAACACCCAGGCACATCCTTTTTGCAAGTGGAGACTCTGAGTGAA
GCTCTCTAAGTCTCTTAGAAACTTAACTCCTTCTCTGCAAAAATGAAGATGTTTTATTGCCTTG
GGGCTGGGAAGCCATCTCCCAGGCTTTCACTTCCTCCCTTCCTCCCTTCTTAGGAACAGTATTG
GCCTTAGTTCCGGGGCCTGTCTGCTGCCTTCCCTCTCCTCCTGCCAGCTCTTCTGCCTTTGTTT
GAGCTCTGTTGGGCTTGAGGGGTTTGGTTCTCTCCCCACCTCCCTGTCACCCTTTTTCTTCTGA
TCAGTTTTTAGGGGAGGGCTCATCTTTTCTGCCTTTATATTTTTTTTCCTAAGAAAGTGTTTGC
CTTTCTTTCACTCTCCTAACATAACAATCGTGGTAACAGAATGCAACTGCTGATTTATCGATGT
ATTTAATGTAAGTAAAAAAGGAAAAAAGAAAGTG

hide sequence

RefSeq Acc Id:

XM_006240752 ⟹ XP_006240814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	1,109,449 - 1,128,295 (-)	NCBI
Rnor_6.0	7	3,104,530 - 3,123,356 (-)	NCBI
Rnor_5.0	7	3,077,228 - 3,096,075 (-)	NCBI

Sequence:

show sequence

GTTTGGTTGAGCTGCAGCTGTTTGTCTGTTCCACACAGGCTTGGGCCCGACGGGGGAGACGGAG
CCCCAGGTACCGAGCTGATGGAGCCCACAAGGGCAGAGGCGGAGGTCCCGAGAGGAGCGCAGCC
TTGCCTGCGGCAGAGGCGGGTCGGGCCGACGCCAGGGCTCGAGAGCCTCCTGGAGCGGGCAAAA
GGGGCTGTCCCGCAGGCCTAGTGGGCGCCGAGGAGGTGATCGGCAGGGCTGGGAGCCGAGCCTC
TAGTTGGGAGGCGGCTGGGTTCTGGCTGCGGCCGCTCGGGGGCCGGGCGCGGGGACCCGGAGCC
GGACTGTTGAGGCCTGGAAGTCCCTCCCTTTCCCCTCCCCCCTTTGCCAATTTGTGGCATTCCC
CTCCCTCTACCTTCTCCTACTTTGATAACCTGGCTATGACTAGCAGAAGTACAGCCAGGCCCAA
TGGGCAGCCCCAGGCCAGCAAAATATGCCAGTTCAAATTGGTCCTGCTGGGAGAATCTGCAGTG
GGGAAGTCGAGCCTGGTGTTACGTTTTGTCAAAGGACAGTTCCATGAATACCAGGAAAGTACCA
TTGGAGCGGCCTTCCTCACCCAGTCGGTGTGTCTAGATGACACAACAGTCAAGTTTGAGATCTG
GGACACAGCTGGGCAGGAACGATACCACAGTTTAGCCCCCATGTACTACAGGGGTGCCCAGGCT
GCCATCGTGGTCTATGATATCACTAATCAGGAAACGTTTGCCCGGGCAAAGACATGGGTAAAGG
AACTACAGCGGCAAGCCAGCCCTAGCATCGTCATTGCCTTGGCAGGGAACAAAGCTGACCTTGC
CAACAAGCGCATGGTGGAGTATGAAGAGGCTCAGGCATATGCAGATGACAACAGCTTATTATTT
ATGGAGACTTCAGCTAAGACTGCTATGAACGTGAATGATCTCTTCCTGGCAATAGCAAAGAAGT
TGCCAAAGAGTGAACCCCAGAATCCAGGGGGTGCAGCAGGCCGAAGTCGGGGCGTGGATCTTCA
TGAGCAGGCCCAGCAGAACAAGAGCCAGTGTTGTAGCAACTGAGGGAGGGGTGGCTAGCAGCAA
ATACGTATGGAATTAGCACGAAAGCTAAGACATAACCTCCATCCCCGCCCCTCAGCACACAGCC
CCTACGGTGACAGCACACTGAGCCCTGGCTCCCAAGGGCTGCCTCCTGACAGCTCCGTCATGGC
ACTTTTTAATGCTTCAGCAACCAACACCAGGCAGCTGTTGCCACTACTATGCCCTACTCTGGGG
CTTGGGGTCAAATCTCCCCAGGACCTTCCTTCCAAAACAAACTTTCTTTACTTCATGTTCTCGG
TGCAAGACAGTGACTTCCTCATTGTCCCATCACCCCCCACCCCTTCCCCTCCATGTTTTCCCAG
TGTTTCAGAGAAGACTTTTGTCTCCTGCCTCCCTCTCCCACCTCTCAGCACTCCCTCCTCTAGA
TCCTGTTTCCTCCTCTTTACAAGATGATGAAGGGTATTCCCAGGTACTGAGAAGGGAGGAATAT
ACTTTTAGTTACATTAAAAACCTTGCCGGGAGAGTAAGGCTCAGAGCAGGAGGGAGTAAGGAAA
CATTTCCTTTCATTTTATCTGGTGAGAGTTTCTTGTCTATGAAACACTGCGGCACCAATCAGTG
GACTTGTGGAGGGTGTCCTAGGTAGGAGTGAGATCGGGGAGGTGAGCTCGCAGGCACTGAATGG
AGTTTATTAGTTAATAGGACACAGATGGAGATGCAGTGTCATCTGTGGCTCTAACTCGTCCCAA
GGCTGCTTTCCTTCTTGTCCCCATCCACTAACCCCACCGAGTGTGGGGATTGGACCTCAGAGTG
CTCCAAAGAATCTTCACTGGTTGCCTGCACCCTTAGTCTGCTGTGATCTAATTGGAGGAGGTAC
CAGTCTCTGATGCCGTCCTCTGAAGCCTGTGTATACATAGGCATTTCCCTACCCTGGCCTTGAG
ATGGCCTTAACCCCAGACACCATGCCCCTGCAGTTTGCACTTTAATTGATGGTAGTTCAGTCAA
GATACATGTTTTTCTTGGGGGGGGGGGTGATTGATTTACCTATCCTTCAACCTTTTTAATTAAA
TGGAATCTACAATGAATGAGGTTTGGAGAGGCCCTATAGACAACAGTCACAGTGGCAGCTACTC
ACACCCAGTGTCCACTGCTAGCTTCCTCTGACTGATTCACACCTCTATTCTTGGGTATAGGTTT
GTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCACGGGCCATGGTAGTGGAGTAAAGAAAGGTC
AGGAAAAGGGAGTGCTCTATCTTCCCAGGGTTCACATTCGATTTGCTACGTCTTACCATGTCTT
TTCTACTTCCCTGTAAATACGTGTAAGTCTTGATTCTCTGTACAGTCAGTTCTGCCTCCTGGTT
CCCATTAGCCCCCTTTTCTTCTCCCTTTTGTTAATATCTTGGGTTTAGTTCCTCCTTCATTCCC
CCACTCACTCTTACTTAATCCATGTACCACTAGAGGCTCCTCCCACAGAGGCCGTTTGTCCAGT
GACAGGGCAACTAGAACTGAAGGTGCCTCACAGCTGCCTTGTATCATCAGAGGGCCTTGGTCCT
TTCTGAATCTCTGGCTTCTCTACATCCTACATTAGATGTTTGAGGGTGTCTGTGAGAAGCCATC
AAAGCAAGAAGGAATTTGATATTTCAGCCAGAGTTTGGGGGTAATTTTCAGAAGAAAGGAAAGA
CCACAGTAGCCTAGAGTTGAGCCTTTCTGCCCCTTTGGCTTAGACACTGACTTGTATTCCAGCT
GAGGAATCCATGAAGCCAAGATTCTCAAGGACCCAACTTAGGTTCTTCCACTTAGAACTCAATT
CTCTTCCTTTTCCAGGGGCAGCCTTAGTTCTCACGGCCCTGAAACATACATATTTACTTTTCTA
GAACCTGTTCATCTGCAAAACACCCAGGCACATCCTTTTTGCAAGTGGAGACTCTGAGTGAAGC
TCTCTAAGTCTCTTAGAAACTTAACTCCTTCTCTGCAAAAATGAAGATGTTTTATTGCCTTGGG
GCTGGGAAGCCATCTCCCAGGCTTTCACTTCCTCCCTTCCTCCCTTCTTAGGAACAGTATTGGC
CTTAGTTCCGGGGCCTGTCTGCTGCCTTCCCTCTCCTCCTGCCAGCTCTTCTGCCTTTGTTTGA
GCTCTGTTGGGCTTGAGGGGTTTGGTTCTCTCCCCACCTCCCTGTCACCCTTTTTCTTCTGATC
AGTTTTTAGGGGAGGGCTCATCTTTTCTGCCTTTATATTTTTTTTCCTAAGAAAGTGTTTGCCT
TTCTTTCACTCTCCTAACATAACAATCGTGGTAACAGAATGCAACTGCTGATTTATCGATGTAT
TTAATGTAAGTAAAAAAGGAAAAAAGAAAGTG

hide sequence

RefSeq Acc Id:

XM_039078547 ⟹ XP_038934475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	1,109,449 - 1,128,004 (-)	NCBI

RefSeq Acc Id:

XM_039078548 ⟹ XP_038934476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	1,109,449 - 1,128,205 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001073405	(Get FASTA)	NCBI Sequence Viewer
	XP_006240812	(Get FASTA)	NCBI Sequence Viewer
	XP_006240813	(Get FASTA)	NCBI Sequence Viewer
	XP_006240814	(Get FASTA)	NCBI Sequence Viewer
	XP_038934475	(Get FASTA)	NCBI Sequence Viewer
	XP_038934476	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI29102	(Get FASTA)	NCBI Sequence Viewer
	EDL84823	(Get FASTA)	NCBI Sequence Viewer
	EDL84824	(Get FASTA)	NCBI Sequence Viewer
	EDL84825	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000058595
	ENSRNOP00000058595.2
	ENSRNOP00000079594
	ENSRNOP00000079594.1
	ENSRNOP00000092616
	ENSRNOP00000092616.1

RefSeq Acc Id:

NP_001073405 ⟸ NM_001079936

- UniProtKB:

A1L1J8 (UniProtKB/TrEMBL), F7F3T1 (UniProtKB/TrEMBL), A0A8I6AII6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL
DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI
ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNPGGA
AGRSRGVDLHEQAQQNKSQCCSN

hide sequence

RefSeq Acc Id:	XP_006240812 ⟸ XM_006240750
- Peptide Label:	isoform X1
- UniProtKB:	A1L1J8 (UniProtKB/TrEMBL), F7F3T1 (UniProtKB/TrEMBL), A0A8I6AII6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNPGGA AGRSRGVDLHEQAQQNKSQCCSN hide sequence

RefSeq Acc Id:	XP_006240813 ⟸ XM_006240751
- Peptide Label:	isoform X1
- UniProtKB:	A1L1J8 (UniProtKB/TrEMBL), F7F3T1 (UniProtKB/TrEMBL), A0A8I6AII6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNPGGA AGRSRGVDLHEQAQQNKSQCCSN hide sequence

RefSeq Acc Id:	XP_006240814 ⟸ XM_006240752
- Peptide Label:	isoform X1
- UniProtKB:	A1L1J8 (UniProtKB/TrEMBL), F7F3T1 (UniProtKB/TrEMBL), A0A8I6AII6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNPGGA AGRSRGVDLHEQAQQNKSQCCSN hide sequence

RefSeq Acc Id:

ENSRNOP00000058595 ⟸ ENSRNOT00000061878

RefSeq Acc Id:	XP_038934476 ⟸ XM_039078548
- Peptide Label:	isoform X1
- UniProtKB:	A1L1J8 (UniProtKB/TrEMBL), F7F3T1 (UniProtKB/TrEMBL), A0A8I6AII6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934475 ⟸ XM_039078547
- Peptide Label:	isoform X1
- UniProtKB:	A1L1J8 (UniProtKB/TrEMBL), F7F3T1 (UniProtKB/TrEMBL), A0A8I6AII6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000079594 ⟸ ENSRNOT00000099796

RefSeq Acc Id:

ENSRNOP00000092616 ⟸ ENSRNOT00000120020

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A1L1J8-F1-model_v2	AlphaFold	A1L1J8	1-215	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694947

Promoter ID:

EPDNEW_R5472

Type:

initiation region

Name:

Rab5b_1

Description:

RAB5B, member RAS oncogene family

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	3,123,352 - 3,123,412	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306489	AgrOrtholog
BioCyc Gene	G2FUF-35340	BioCyc
Ensembl Genes	ENSRNOG00000006130	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000061878	ENTREZGENE
	ENSRNOT00000061878.5	UniProtKB/TrEMBL
	ENSRNOT00000099796	ENTREZGENE
	ENSRNOT00000099796.1	UniProtKB/TrEMBL
	ENSRNOT00000120020	ENTREZGENE
	ENSRNOT00000120020.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7098463	IMAGE-MGC_LOAD
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Ras_GTPase	UniProtKB/TrEMBL
	Small_GTP-bd	UniProtKB/TrEMBL
KEGG Report	rno:288779	UniProtKB/TrEMBL
MGC_CLONE	MGC:156695	IMAGE-MGC_LOAD
NCBI Gene	288779	ENTREZGENE
PANTHER	PTHR47978	UniProtKB/TrEMBL
	RAS-RELATED PROTEIN RAB-21	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PhenoGen	Rab5b	PhenoGen
PRINTS	RASTRNSFRMNG	UniProtKB/TrEMBL
PROSITE	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006130	RatGTEx
SMART	RAB	UniProtKB/TrEMBL
	RAN	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I5ZN01_RAT	UniProtKB/TrEMBL
	A0A8I6AII6	ENTREZGENE, UniProtKB/TrEMBL
	A1L1J8	ENTREZGENE, UniProtKB/TrEMBL
	F7F3T1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Rab5b	RAB5B, member RAS oncogene family	Rab5b_predicted	RAB5B, member RAS oncogene family (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Rab5b_predicted	RAB5B, member RAS oncogene family (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)