D7Rat216 Marker Search Result - Rat Genome Database

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Marker: D7Rat216

Symbol: D7Rat216
Previously known as: oxsts11427; R0321-D09; 
RGD ID: 42816
Expected Size: 210 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2717,678,338 - 17,678,552 (+)MAPPERmRatBN7.2
Rnor_6.0723,700,654 - 23,700,867NCBIRnor6.0
Rnor_5.0723,850,893 - 23,851,106UniSTSRnor5.0
RGSC_v3.4719,833,592 - 19,833,806RGDRGSC3.4
RGSC_v3.4719,833,593 - 19,833,806UniSTSRGSC3.4
RGSC_v3.1719,847,222 - 19,847,649RGD
Celera714,916,655 - 14,916,868UniSTS
SHRSP x BN Map76.87RGD
SHRSP x BN Map76.87UniSTS
Cytogenetic Map7q13UniSTS
Is Marker For: Genes:   Syn3  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCCAATTTGTGAGCCAATGA
Reverse Primer CATGCACATGTGCGTGAATA
 
Template 
TGCTGCAGGTCGCTCTAGAGGATCCCCACATGTAACCCAGCCTTGGAGTCTCAGGAAGACTTTT
TAGAAGAGAACGTTCTCCCAAAGGAGAAGGGCTTCCACACTAGAGAGTTTTCTCCATTGGCAAA
ATGCTTGCCTTGAAAGCAAGACAACAGGAGTTCCAATTTGTGAGCCAATGATGGTGAGTCAGGG
CAGTAGAGACAGGTGGATCCCTAGAAGCTTGCTAGTCAGCCAGTTGGGCCTAGTTGAAGTTCTG
GGCCAGTGAGAGACCTTTCCTTGTGCGCATGCCCGCACACACACACACACATACACACACACAC
ACACACACACACACACACACACACAAACATATTCACGCACATGTGCATGCGTGATCCGGGGCCG
GGAGGAGGCTCTTCCAATAAGCGTGAGAGTATACAATAAAGCACCATGATCCAAGCGGATGGCC
TTGCTGCAGNCAGNGATNGATAANTNAANNCAAGGNGGNTTTTGNGGGGGNNNCCTNAATTTGG
NTTNNCCAANGGGGGNNC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3799Syn3synapsin III71621605517808790Rat

Nucleotide Sequences
GenBank Nucleotide AC133425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 29130 UniSTS