D7Uia7 Marker Search Result - Rat Genome Database
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Summary
References - curated
Strains and Sequence
Sequence
Region
Genes in Region
Nucleotide Sequences
QTLs in Region (GRCr8)
Additional Information
External Database Links
General
Marker: D7Uia7
Symbol:
D7Uia7
Previously known as:
oxsts8646; 130000000;
RGD ID:
1633715
Expected Size:
205 (bp)
Position
Rat Assembly
Chr
Position (strand)
Source
JBrowse
mRatBN7.2
7
1,363,523 - 1,363,728 (+)
MAPPER
mRatBN7.2
Rnor_6.0
7
3,358,656 - 3,358,860
NCBI
Rnor6.0
Rnor_5.0
7
3,328,840 - 3,329,044
UniSTS
Rnor5.0
RGSC_v3.4
7
2,234,144 - 2,234,348
UniSTS
RGSC3.4
Celera
7
1,234,564 - 1,234,768
UniSTS
Cytogenetic Map
7
q11
UniSTS
Is Marker For:
Genes:
Itga7
Annotation
References - curated
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#
Reference Title
Reference Citation
1.
Data downloaded from Wellcome Trust, University of Oxford
Data downloaded from Wellcome Trust, University of Oxford
2.
UniSTS Pipeline
RGD automated pipelines
1 to 2 of 2 rows
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Strains and Sequence
Sequence
Forward Primer
GCAGGAGCAACAAGTGTTTT
Reverse Primer
GGTTAAGAGCCCTGACTGTTC
Region
Genes in Region
1 to 1 of 1 rows
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The following
Genes
overlap with this region.
Full Report
CSV
TAB
Printer
Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
71022
Itga7
integrin subunit alpha 7
7
1360125
1388886
Rat
1 to 1 of 1 rows
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20
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100
All Rows
Nucleotide Sequences
1 to 1 of 1 rows
3
5
10
20
30
100
All Rows
GenBank Nucleotide
AF053391
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
1 to 1 of 1 rows
3
5
10
20
30
100
All Rows
QTLs in Region (GRCr8)
1 to 9 of 9 rows
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All Rows
The following
QTLs
overlap with this region.
Full Report
CSV
TAB
Printer
Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61410
Bw19
Body weight QTL 19
6.2
0.001
body mass (VT:0001259)
body weight (CMO:0000012)
7
1
44782185
Rat
1300176
Hrtrt10
Heart rate QTL 10
3.19
heart pumping trait (VT:2000009)
heart rate (CMO:0000002)
7
664270
26029351
Rat
2317047
Wbc4
White blood cell count QTL 4
0.01
leukocyte quantity (VT:0000217)
white blood cell count (CMO:0000027)
7
1
35342956
Rat
2298550
Neuinf6
Neuroinflammation QTL 6
3.3
nervous system integrity trait (VT:0010566)
spinal cord RT1-B protein level (CMO:0002132)
7
1
27829089
Rat
631503
Bp102
Blood pressure QTL 102
1.9
arterial blood pressure trait (VT:2000000)
systolic blood pressure (CMO:0000004)
7
1
44822433
Rat
634336
Anxrr17
Anxiety related response QTL 17
3.66
locomotor behavior trait (VT:0001392)
number of entries into a discrete space in an experimental apparatus (CMO:0000960)
7
924703
115097879
Rat
724560
Plsm3
Polydactyly-luxate syndrome (PLS) morphotypes QTL 3
0.0003
tibia length (VT:0004357)
tibia length (CMO:0000450)
7
1
34000259
Rat
9590142
Scort5
Serum corticosterone level QTL 5
24.4
0.001
blood corticosterone amount (VT:0005345)
plasma corticosterone level (CMO:0001173)
7
1
31962314
Rat
7411566
Bw136
Body weight QTL 136
10.4
0.001
body mass (VT:0001259)
body weight gain (CMO:0000420)
7
1
31962314
Rat
1 to 9 of 9 rows
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Additional Information
External Database Links
1 to 1 of 1 rows
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Database
Acc Id
Source(s)
NCBI Gene
81008
UniSTS
1 to 1 of 1 rows
3
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