Dazap1 (DAZ associated protein 1) - Rat Genome Database

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Gene: Dazap1 (DAZ associated protein 1) Rattus norvegicus
Analyze
Symbol: Dazap1
Name: DAZ associated protein 1
RGD ID: 1305280
Description: Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome and spermatogenesis. Predicted to act upstream of or within cell population proliferation and maternal placenta development. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of ribonucleoprotein complex. Orthologous to human DAZAP1 (DAZ associated protein 1); PARTICIPATES IN mRNA decay pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; allethrin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DAZ-associated protein 1; LOC362836; MGC114376
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.279,423,673 - 9,448,116 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl79,424,178 - 9,538,818 (-)Ensembl
Rnor_6.0712,289,895 - 12,315,897 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,290,402 - 12,311,149 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,459,595 - 12,484,021 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4710,935,537 - 10,956,289 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1710,935,536 - 10,956,289 (-)NCBI
Celera77,600,951 - 7,621,631 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10857750   PMID:11604102   PMID:12185095   PMID:12477932   PMID:15081113   PMID:15647502   PMID:15700540   PMID:16209998   PMID:18669443   PMID:22658674   PMID:22681889   PMID:23636947  


Genomics

Comparative Map Data
Dazap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.279,423,673 - 9,448,116 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl79,424,178 - 9,538,818 (-)Ensembl
Rnor_6.0712,289,895 - 12,315,897 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,290,402 - 12,311,149 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,459,595 - 12,484,021 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4710,935,537 - 10,956,289 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1710,935,536 - 10,956,289 (-)NCBI
Celera77,600,951 - 7,621,631 (-)NCBICelera
Cytogenetic Map7q11NCBI
DAZAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,407,586 - 1,435,684 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl191,407,569 - 1,435,687 (+)EnsemblGRCh38hg38GRCh38
GRCh37191,407,585 - 1,435,683 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,358,584 - 1,386,683 (+)NCBINCBI36hg18NCBI36
Build 34191,358,583 - 1,386,683NCBI
Celera191,341,862 - 1,369,681 (+)NCBI
Cytogenetic Map19p13.3NCBI
HuRef191,170,341 - 1,210,179 (+)NCBIHuRef
CHM1_1191,407,703 - 1,435,678 (+)NCBICHM1_1
Dazap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391080,097,168 - 80,124,242 (+)NCBIGRCm39mm39
GRCm39 Ensembl1080,097,320 - 80,124,242 (+)Ensembl
GRCm381080,261,362 - 80,288,408 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,261,486 - 80,288,408 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,727,736 - 79,751,158 (+)NCBIGRCm37mm9NCBIm37
MGSCv361079,668,226 - 79,691,203 (+)NCBImm8
Celera1081,279,864 - 81,303,286 (+)NCBICelera
Cytogenetic Map10C1NCBI
Dazap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,497,890 - 6,524,462 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,499,553 - 6,516,227 (-)NCBIChiLan1.0ChiLan1.0
DAZAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1191,391,441 - 1,409,016 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,391,764 - 1,408,254 (+)Ensemblpanpan1.1panPan2
DAZAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,411,249 - 57,435,852 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,411,825 - 57,435,799 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,202,656 - 57,227,082 (-)NCBI
ROS_Cfam_1.02058,141,946 - 58,166,379 (-)NCBI
ROS_Cfam_1.0 Ensembl2058,141,947 - 58,166,420 (-)Ensembl
UMICH_Zoey_3.12057,197,932 - 57,222,358 (-)NCBI
UNSW_CanFamBas_1.02057,677,585 - 57,702,032 (-)NCBI
UU_Cfam_GSD_1.02057,879,614 - 57,904,050 (-)NCBI
Dazap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,076,561 - 217,093,531 (-)NCBI
SpeTri2.0NW_004936588730,626 - 758,074 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DAZAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,047,910 - 77,200,559 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,048,890 - 77,070,565 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,941,175 - 77,962,866 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DAZAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.161,181,416 - 1,208,784 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl61,181,408 - 1,208,838 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660817,644,771 - 7,684,540 (-)NCBIVero_WHO_p1.0
Dazap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248287,258,582 - 7,283,931 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH140052  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,431,245 - 9,431,447 (+)MAPPERmRatBN7.2
Rnor_6.0712,297,468 - 12,297,669NCBIRnor6.0
Rnor_5.0712,467,168 - 12,467,369UniSTSRnor5.0
RGSC_v3.4710,942,608 - 10,942,809UniSTSRGSC3.4
Celera77,607,934 - 7,608,135UniSTS
Cytogenetic Map7q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:40
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000046886
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000021648   ⟹   ENSRNOP00000021648
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl79,535,009 - 9,538,818 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000046886   ⟹   ENSRNOP00000046032
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl79,424,180 - 9,444,929 (-)Ensembl
Rnor_6.0 Ensembl712,290,402 - 12,311,149 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100123   ⟹   ENSRNOP00000090669
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl79,424,178 - 9,448,078 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101444   ⟹   ENSRNOP00000088612
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl79,424,180 - 9,536,880 (-)Ensembl
RefSeq Acc Id: NM_001025742   ⟹   NP_001020913
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.279,424,175 - 9,444,929 (-)NCBI
Rnor_6.0712,290,397 - 12,311,149 (-)NCBI
Rnor_5.0712,459,595 - 12,484,021 (-)NCBI
RGSC_v3.4710,935,537 - 10,956,289 (-)RGD
Celera77,600,951 - 7,621,631 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240968   ⟹   XP_006241030
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.279,423,673 - 9,444,970 (-)NCBI
Rnor_6.0712,289,895 - 12,311,201 (-)NCBI
Rnor_5.0712,459,595 - 12,484,021 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240969   ⟹   XP_006241031
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.279,423,673 - 9,448,116 (-)NCBI
Rnor_6.0712,289,895 - 12,314,327 (-)NCBI
Rnor_5.0712,459,595 - 12,484,021 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240970   ⟹   XP_006241032
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.279,423,673 - 9,448,116 (-)NCBI
Rnor_6.0712,289,895 - 12,314,326 (-)NCBI
Rnor_5.0712,459,595 - 12,484,021 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079402   ⟹   XP_038935330
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.279,423,673 - 9,444,971 (-)NCBI
RefSeq Acc Id: XM_039079403   ⟹   XP_038935331
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.279,423,673 - 9,444,973 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001020913   ⟸   NM_001025742
- UniProtKB: Q4KLZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241032   ⟸   XM_006240970
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006241031   ⟸   XM_006240969
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006241030   ⟸   XM_006240968
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000046032   ⟸   ENSRNOT00000046886
RefSeq Acc Id: XP_038935331   ⟸   XM_039079403
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038935330   ⟸   XM_039079402
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000088612   ⟸   ENSRNOT00000101444
RefSeq Acc Id: ENSRNOP00000021648   ⟸   ENSRNOT00000021648
RefSeq Acc Id: ENSRNOP00000090669   ⟸   ENSRNOT00000100123
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLZ3-F1-model_v2 AlphaFold Q4KLZ3 1-405 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695027
Promoter ID:EPDNEW_R5551
Type:initiation region
Name:Dazap1_1
Description:DAZ associated protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0712,311,146 - 12,311,206EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305280 AgrOrtholog
BioCyc Gene G2FUF-34928 BioCyc
Ensembl Genes ENSRNOG00000031387 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000046032 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000090669 ENTREZGENE
Ensembl Transcript ENSRNOT00000046886 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000100123 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133110 IMAGE-MGC_LOAD
  IMAGE:7133199 IMAGE-MGC_LOAD
InterPro DAZAP1_RRM1 UniProtKB/TrEMBL
  DAZAP1_RRM2 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report rno:362836 UniProtKB/TrEMBL
MGC_CLONE MGC:114376 IMAGE-MGC_LOAD
  MGC:94347 IMAGE-MGC_LOAD
NCBI Gene 362836 ENTREZGENE
Pfam RRM_1 UniProtKB/TrEMBL
PhenoGen Dazap1 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt Q4KLZ3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F2Z3S1 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Dazap1  DAZ associated protein 1  Dazap1_predicted  DAZ associated protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Dazap1_predicted  DAZ associated protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED