LOC120093915 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120093915 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120093915
Name: U6 spliceosomal RNA
RGD ID: 41293978
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8712,862,780 - 12,862,870 (+)NCBIGRCr8
mRatBN7.2712,212,291 - 12,212,381 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl712,212,291 - 12,212,381 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl712,212,291 - 12,212,381 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl715,377,846 - 15,377,940 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120093915
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8712,862,780 - 12,862,870 (+)NCBIGRCr8
mRatBN7.2712,212,291 - 12,212,381 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl712,212,291 - 12,212,381 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl712,212,291 - 12,212,381 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl715,377,846 - 15,377,940 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map7q11NCBI
RNU6-83P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381399,025,234 - 99,025,345 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1399,025,234 - 99,025,345 (+)EnsemblGRCh38hg38GRCh38
GRCh371399,677,488 - 99,677,599 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q32.3NCBI
HuRef1380,271,478 - 80,271,589 (+)NCBIHuRef
CHM1_11399,647,234 - 99,647,345 (+)NCBICHM1_1
T2T-CHM13v2.01398,235,038 - 98,235,149 (+)NCBIT2T-CHM13v2.0
LOC119873547
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha944,951,500 - 44,951,606 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0946,627,686 - 46,627,792 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl946,627,686 - 46,627,792 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1945,397,777 - 45,397,883 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0945,692,315 - 45,692,421 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0945,746,760 - 45,746,866 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC120093915
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000080412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl712,212,291 - 12,212,381 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-34787 BioCyc
Ensembl Genes ENSRNOG00000058134 Ensembl, ENTREZGENE
NCBI Gene LOC120093915 ENTREZGENE
PhenoGen LOC120093915 PhenoGen
RatGTEx ENSRNOG00000058134 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120093915  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15011547 737654 PROVISIONAL
2021-01-27 LOC120093915  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL