Wiz (WIZ zinc finger) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Wiz (WIZ zinc finger) Rattus norvegicus
Analyze
Symbol: Wiz
Name: WIZ zinc finger
RGD ID: 1307771
Description: Predicted to enable several functions, including SET domain binding activity; histone methyltransferase binding activity; and transcription corepressor binding activity. Predicted to be involved in positive regulation of nuclear cell cycle DNA replication; protein stabilization; and regulation of transcription by RNA polymerase II. Predicted to be located in midbody and nucleoplasm. Predicted to be active in nucleus. Orthologous to human WIZ (WIZ zinc finger); INTERACTS WITH 17beta-estradiol 3-benzoate; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC314598; widely-interspaced zinc finger motifs
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8712,017,374 - 12,045,812 (-)NCBIGRCr8
mRatBN7.2711,366,837 - 11,395,279 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl711,367,035 - 11,395,490 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0714,374,358 - 14,402,647 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl714,374,358 - 14,402,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0714,528,651 - 14,556,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4712,923,848 - 12,951,555 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1712,923,779 - 12,952,653 (-)NCBI
Celera79,477,871 - 9,505,633 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
midbody  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Aberrantly Methylated-Differentially Expressed Genes Identify Novel Atherosclerosis Risk Subtypes. Xue Y, etal., Front Genet. 2020 Dec 14;11:569572. doi: 10.3389/fgene.2020.569572. eCollection 2020.
Additional References at PubMed
PMID:16702210   PMID:19056867   PMID:22082260   PMID:23545495  


Genomics

Comparative Map Data
Wiz
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8712,017,374 - 12,045,812 (-)NCBIGRCr8
mRatBN7.2711,366,837 - 11,395,279 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl711,367,035 - 11,395,490 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0714,374,358 - 14,402,647 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl714,374,358 - 14,402,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0714,528,651 - 14,556,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4712,923,848 - 12,951,555 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1712,923,779 - 12,952,653 (-)NCBI
Celera79,477,871 - 9,505,633 (-)NCBICelera
Cytogenetic Map7q11NCBI
WIZ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381915,419,978 - 15,449,956 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1915,419,978 - 15,449,956 (-)EnsemblGRCh38hg38GRCh38
GRCh371915,530,789 - 15,560,767 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361915,393,318 - 15,421,762 (-)NCBINCBI36Build 36hg18NCBI36
Celera1915,427,962 - 15,457,580 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1915,100,244 - 15,126,923 (-)NCBIHuRef
CHM1_11915,531,951 - 15,560,460 (-)NCBICHM1_1
T2T-CHM13v2.01915,544,969 - 15,574,945 (-)NCBIT2T-CHM13v2.0
Wiz
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391732,573,021 - 32,608,463 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1732,573,029 - 32,608,413 (-)EnsemblGRCm39 Ensembl
GRCm381732,354,047 - 32,389,501 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1732,354,055 - 32,389,439 (-)EnsemblGRCm38mm10GRCm38
MGSCv371732,490,995 - 32,526,384 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361732,085,684 - 32,121,093 (-)NCBIMGSCv36mm8
Celera1733,274,879 - 33,303,324 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.52NCBI
Wiz
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554957,811,804 - 7,833,918 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554957,810,145 - 7,834,908 (+)NCBIChiLan1.0ChiLan1.0
WIZ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22020,334,678 - 20,363,125 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11919,337,451 - 19,365,898 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01914,952,948 - 14,981,300 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11915,939,104 - 15,965,914 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1915,940,642 - 15,965,859 (-)Ensemblpanpan1.1panPan2
WIZ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,746,991 - 46,773,065 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,747,062 - 46,817,240 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,593,062 - 46,619,095 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02047,232,138 - 47,258,176 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2047,232,152 - 47,287,197 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12046,467,006 - 46,493,040 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,883,655 - 46,909,689 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02047,157,162 - 47,183,198 (+)NCBIUU_Cfam_GSD_1.0
Wiz
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118205,511,416 - 205,535,792 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365965,061,674 - 5,084,931 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WIZ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl262,155,428 - 62,182,769 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1262,155,387 - 62,181,797 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,730,981 - 61,757,124 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WIZ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,025,533 - 14,052,834 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660745,455,360 - 5,482,502 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wiz
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249012,511,986 - 2,536,939 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wiz
45 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:88
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000008303
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat

Markers in Region
BF402727  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2711,377,958 - 11,378,121 (+)MAPPERmRatBN7.2
Rnor_6.0714,385,478 - 14,385,640NCBIRnor6.0
Rnor_5.0714,539,827 - 14,539,989UniSTSRnor5.0
RGSC_v3.4712,935,023 - 12,935,185UniSTSRGSC3.4
Celera79,489,101 - 9,489,263UniSTS
RH 3.4 Map761.5UniSTS
Cytogenetic Map7q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 25 25 3 25 66 27 35 3
Low 10 32 16 16 16 8 11 8 8 6 8 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001427399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000008303   ⟹   ENSRNOP00000008303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl711,367,035 - 11,395,490 (-)Ensembl
Rnor_6.0 Ensembl714,374,358 - 14,402,010 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095805   ⟹   ENSRNOP00000079133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl711,384,078 - 11,395,490 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103303   ⟹   ENSRNOP00000080016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl711,369,974 - 11,394,692 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109179   ⟹   ENSRNOP00000093209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl711,367,035 - 11,377,605 (-)Ensembl
RefSeq Acc Id: NM_001427399   ⟹   NP_001414328
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,787 (-)NCBI
RefSeq Acc Id: XM_008765161   ⟹   XP_008763383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,493 (-)NCBI
mRatBN7.2711,366,837 - 11,394,960 (-)NCBI
Rnor_6.0714,374,359 - 14,402,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765163   ⟹   XP_008763385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,811 (-)NCBI
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
Rnor_6.0714,374,359 - 14,402,626 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594800   ⟹   XP_017450289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,811 (-)NCBI
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
Rnor_6.0714,374,359 - 14,402,624 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594801   ⟹   XP_017450290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,493 (-)NCBI
mRatBN7.2711,366,837 - 11,394,960 (-)NCBI
Rnor_6.0714,374,359 - 14,402,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594803   ⟹   XP_017450292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,043,977 (-)NCBI
mRatBN7.2711,366,837 - 11,393,445 (-)NCBI
Rnor_6.0714,374,359 - 14,400,915 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080029   ⟹   XP_038935957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,811 (-)NCBI
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
RefSeq Acc Id: XM_039080031   ⟹   XP_038935959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,799 (-)NCBI
mRatBN7.2711,366,837 - 11,395,274 (-)NCBI
RefSeq Acc Id: XM_039080032   ⟹   XP_038935960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,493 (-)NCBI
mRatBN7.2711,366,837 - 11,393,548 (-)NCBI
RefSeq Acc Id: XM_039080033   ⟹   XP_038935961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,811 (-)NCBI
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
RefSeq Acc Id: XM_039080034   ⟹   XP_038935962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,037,325 (-)NCBI
mRatBN7.2711,366,837 - 11,386,789 (-)NCBI
RefSeq Acc Id: XM_039080035   ⟹   XP_038935963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,811 (-)NCBI
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
RefSeq Acc Id: XM_039080036   ⟹   XP_038935964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,811 (-)NCBI
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
RefSeq Acc Id: XM_039080037   ⟹   XP_038935965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,812 (-)NCBI
mRatBN7.2711,366,837 - 11,395,279 (-)NCBI
RefSeq Acc Id: XM_039080038   ⟹   XP_038935966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,803 (-)NCBI
mRatBN7.2711,366,837 - 11,395,270 (-)NCBI
RefSeq Acc Id: XM_039080040   ⟹   XP_038935968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,802 (-)NCBI
mRatBN7.2711,366,837 - 11,395,270 (-)NCBI
RefSeq Acc Id: XM_039080041   ⟹   XP_038935969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,030,971 (-)NCBI
mRatBN7.2711,366,837 - 11,378,486 (-)NCBI
RefSeq Acc Id: XM_039080042   ⟹   XP_038935970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,801 (-)NCBI
mRatBN7.2711,366,837 - 11,395,269 (-)NCBI
RefSeq Acc Id: XM_039080043   ⟹   XP_038935971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,030,971 (-)NCBI
mRatBN7.2711,366,837 - 11,378,486 (-)NCBI
RefSeq Acc Id: XM_039080044   ⟹   XP_038935972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,801 (-)NCBI
mRatBN7.2711,366,837 - 11,395,269 (-)NCBI
RefSeq Acc Id: XM_063263401   ⟹   XP_063119471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,811 (-)NCBI
RefSeq Acc Id: XM_063263402   ⟹   XP_063119472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,489 (-)NCBI
RefSeq Acc Id: XM_063263403   ⟹   XP_063119473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,489 (-)NCBI
RefSeq Acc Id: XM_063263404   ⟹   XP_063119474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,802 (-)NCBI
RefSeq Acc Id: XM_063263405   ⟹   XP_063119475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,488 (-)NCBI
RefSeq Acc Id: XM_063263406   ⟹   XP_063119476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,801 (-)NCBI
RefSeq Acc Id: XM_063263407   ⟹   XP_063119477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,017,374 - 12,045,488 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001414328 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763383 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763385 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450289 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450290 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450292 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935957 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935959 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935960 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935961 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935962 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935963 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935964 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935965 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935966 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935968 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935969 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935970 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935971 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935972 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119471 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119472 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119473 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119474 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119475 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119476 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119477 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL89467 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000008303.4
  ENSRNOP00000079133.1
  ENSRNOP00000080016.1
  ENSRNOP00000093209.1
RefSeq Acc Id: XP_008763385   ⟸   XM_008765163
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008763383   ⟸   XM_008765161
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450289   ⟸   XM_017594800
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450290   ⟸   XM_017594801
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450292   ⟸   XM_017594803
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000008303   ⟸   ENSRNOT00000008303
RefSeq Acc Id: XP_038935965   ⟸   XM_039080037
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038935964   ⟸   XM_039080036
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038935961   ⟸   XM_039080033
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038935963   ⟸   XM_039080035
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038935957   ⟸   XM_039080029
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038935959   ⟸   XM_039080031
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038935968   ⟸   XM_039080040
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038935966   ⟸   XM_039080038
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038935972   ⟸   XM_039080044
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038935970   ⟸   XM_039080042
- Peptide Label: isoform X15
- UniProtKB: D3ZQQ2 (UniProtKB/TrEMBL),   A6K947 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935960   ⟸   XM_039080032
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935962   ⟸   XM_039080034
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038935971   ⟸   XM_039080043
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038935969   ⟸   XM_039080041
- Peptide Label: isoform X11
- UniProtKB: A0A8I6AH19 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000080016   ⟸   ENSRNOT00000103303
RefSeq Acc Id: ENSRNOP00000079133   ⟸   ENSRNOT00000095805
RefSeq Acc Id: ENSRNOP00000093209   ⟸   ENSRNOT00000109179
RefSeq Acc Id: XP_063119471   ⟸   XM_063263401
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063119474   ⟸   XM_063263404
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063119476   ⟸   XM_063263406
- Peptide Label: isoform X15
- UniProtKB: A6K947 (UniProtKB/TrEMBL),   D3ZQQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414328   ⟸   NM_001427399
RefSeq Acc Id: XP_063119473   ⟸   XM_063263403
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063119472   ⟸   XM_063263402
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063119477   ⟸   XM_063263407
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063119475   ⟸   XM_063263405
- Peptide Label: isoform X14
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQQ2-F1-model_v2 AlphaFold D3ZQQ2 1-962 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307771 AgrOrtholog
BioCyc Gene G2FUF-34827 BioCyc
Ensembl Genes ENSRNOG00000006217 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008303.6 UniProtKB/TrEMBL
  ENSRNOT00000095805.1 UniProtKB/TrEMBL
  ENSRNOT00000103303.1 UniProtKB/TrEMBL
  ENSRNOT00000109179.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene 314598 ENTREZGENE
PANTHER PROTEIN WIZ UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
PhenoGen Wiz PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006217 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZM39_RAT UniProtKB/TrEMBL
  A0A8I5ZPR7_RAT UniProtKB/TrEMBL
  A0A8I6AH19 ENTREZGENE, UniProtKB/TrEMBL
  A6K947 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQQ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-12-04 Wiz  WIZ zinc finger  Wiz  widely-interspaced zinc finger motifs  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Wiz  widely-interspaced zinc finger motifs   Wiz_predicted  widely-interspaced zinc finger motifs (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Wiz_predicted  widely-interspaced zinc finger motifs (predicted)      Symbol and Name status set to approved 70820 APPROVED