Wiz (WIZ zinc finger) - Rat Genome Database
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Gene: Wiz (WIZ zinc finger) Rattus norvegicus
Analyze
Symbol: Wiz
Name: WIZ zinc finger
RGD ID: 1307771
Description: Predicted to have several functions, including RNA polymerase II transcription corepressor binding activity; SET domain binding activity; and histone methyltransferase binding activity. Predicted to be involved in positive regulation of nuclear cell cycle DNA replication; protein stabilization; and regulation of transcription, DNA-templated. Predicted to localize to midbody and nucleoplasm. Orthologous to human WIZ (WIZ zinc finger); INTERACTS WITH 17beta-estradiol 3-benzoate; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC314598; widely-interspaced zinc finger motifs
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2711,366,837 - 11,395,279 (-)NCBI
Rnor_6.0 Ensembl714,374,358 - 14,402,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0714,374,358 - 14,402,647 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0714,528,651 - 14,556,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4712,923,848 - 12,951,555 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1712,923,779 - 12,952,653 (-)NCBI
Celera79,477,871 - 9,505,633 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
midbody  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

References

Additional References at PubMed
PMID:16702210   PMID:19056867   PMID:22082260   PMID:23545495  


Genomics

Comparative Map Data
Wiz
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2711,366,837 - 11,395,279 (-)NCBI
Rnor_6.0 Ensembl714,374,358 - 14,402,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0714,374,358 - 14,402,647 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0714,528,651 - 14,556,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4712,923,848 - 12,951,555 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1712,923,779 - 12,952,653 (-)NCBI
Celera79,477,871 - 9,505,633 (-)NCBICelera
Cytogenetic Map7q11NCBI
WIZ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1915,419,980 - 15,449,951 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1915,419,978 - 15,449,956 (-)EnsemblGRCh38hg38GRCh38
GRCh381915,419,978 - 15,449,956 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371915,532,318 - 15,560,767 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371915,530,789 - 15,560,767 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361915,393,318 - 15,421,762 (-)NCBINCBI36hg18NCBI36
Celera1915,427,962 - 15,457,580 (-)NCBI
Cytogenetic Map19p13.12NCBI
HuRef1915,100,244 - 15,126,923 (-)NCBIHuRef
CHM1_11915,531,951 - 15,560,460 (-)NCBICHM1_1
Wiz
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391732,573,021 - 32,608,475 (-)NCBIGRCm39mm39
GRCm381732,354,047 - 32,389,501 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1732,354,055 - 32,389,439 (-)EnsemblGRCm38mm10GRCm38
MGSCv371732,490,995 - 32,526,384 (-)NCBIGRCm37mm9NCBIm37
MGSCv361732,085,684 - 32,121,093 (-)NCBImm8
Celera1733,274,879 - 33,303,324 (-)NCBICelera
Cytogenetic Map17B1NCBI
Wiz
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554957,811,804 - 7,833,918 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554957,810,145 - 7,834,908 (+)NCBIChiLan1.0ChiLan1.0
WIZ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11915,939,104 - 15,965,914 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1915,940,642 - 15,965,859 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01914,952,948 - 14,981,300 (-)NCBIMhudiblu_PPA_v0panPan3
WIZ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2046,747,062 - 46,817,240 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12046,746,991 - 46,773,065 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Wiz
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365965,061,674 - 5,084,931 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WIZ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl262,155,428 - 62,182,794 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1262,155,387 - 62,181,797 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,730,981 - 61,757,124 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WIZ
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,025,533 - 14,052,834 (-)NCBI
Wiz
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249012,511,986 - 2,536,939 (-)NCBI

Position Markers
BF402727  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0714,385,478 - 14,385,640NCBIRnor6.0
Rnor_5.0714,539,827 - 14,539,989UniSTSRnor5.0
RGSC_v3.4712,935,023 - 12,935,185UniSTSRGSC3.4
Celera79,489,101 - 9,489,263UniSTS
RH 3.4 Map761.5UniSTS
Cytogenetic Map7q11UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7134147172Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7134828535Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7134828535Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7137009673Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7138119654Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7265313832258115Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)72920071124838025Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7591147750911477Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7595196950951969Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7975804554758045Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)71164710256647102Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71232846767193263Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)712328467106995532Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71268785067801690Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71395217958952179Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:88
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000008303
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 25 25 3 25 66 27 35 3
Low 10 32 16 16 16 8 11 8 8 6 8 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008765161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000008303   ⟹   ENSRNOP00000008303
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl714,374,358 - 14,402,010 (-)Ensembl
RefSeq Acc Id: NM_001108064   ⟹   NP_001101534
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0714,374,358 - 14,402,010 (-)NCBI
Rnor_5.0714,528,651 - 14,556,782 (-)NCBI
RGSC_v3.4712,923,848 - 12,951,555 (-)RGD
Celera79,477,871 - 9,505,633 (-)RGD
Sequence:
RefSeq Acc Id: XM_008765161   ⟹   XP_008763383
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,394,960 (-)NCBI
Rnor_6.0714,374,359 - 14,402,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765162   ⟹   XP_008763384
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0714,374,359 - 14,402,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765163   ⟹   XP_008763385
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
Rnor_6.0714,374,359 - 14,402,626 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765164   ⟹   XP_008763386
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
Rnor_6.0714,374,359 - 14,402,647 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765166   ⟹   XP_008763388
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0714,374,359 - 14,394,287 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594800   ⟹   XP_017450289
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
Rnor_6.0714,374,359 - 14,402,624 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594801   ⟹   XP_017450290
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,394,960 (-)NCBI
Rnor_6.0714,374,359 - 14,402,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594802   ⟹   XP_017450291
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0714,374,359 - 14,402,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594803   ⟹   XP_017450292
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,393,445 (-)NCBI
Rnor_6.0714,374,359 - 14,400,915 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594804   ⟹   XP_017450293
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0714,374,359 - 14,400,984 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594805   ⟹   XP_017450294
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0714,374,359 - 14,402,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594806   ⟹   XP_017450295
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0714,374,359 - 14,402,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594807   ⟹   XP_017450296
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0714,374,359 - 14,402,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594808   ⟹   XP_017450297
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0714,374,359 - 14,402,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594809   ⟹   XP_017450298
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0714,374,359 - 14,384,707 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594810   ⟹   XP_017450299
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0714,374,359 - 14,402,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080029   ⟹   XP_038935957
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
RefSeq Acc Id: XM_039080031   ⟹   XP_038935959
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,274 (-)NCBI
RefSeq Acc Id: XM_039080032   ⟹   XP_038935960
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,393,548 (-)NCBI
RefSeq Acc Id: XM_039080033   ⟹   XP_038935961
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
RefSeq Acc Id: XM_039080034   ⟹   XP_038935962
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,386,789 (-)NCBI
RefSeq Acc Id: XM_039080035   ⟹   XP_038935963
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
RefSeq Acc Id: XM_039080036   ⟹   XP_038935964
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,278 (-)NCBI
RefSeq Acc Id: XM_039080037   ⟹   XP_038935965
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,279 (-)NCBI
RefSeq Acc Id: XM_039080038   ⟹   XP_038935966
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,270 (-)NCBI
RefSeq Acc Id: XM_039080039   ⟹   XP_038935967
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,393,548 (-)NCBI
RefSeq Acc Id: XM_039080040   ⟹   XP_038935968
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,270 (-)NCBI
RefSeq Acc Id: XM_039080041   ⟹   XP_038935969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,378,486 (-)NCBI
RefSeq Acc Id: XM_039080042   ⟹   XP_038935970
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,269 (-)NCBI
RefSeq Acc Id: XM_039080043   ⟹   XP_038935971
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,378,486 (-)NCBI
RefSeq Acc Id: XM_039080044   ⟹   XP_038935972
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2711,366,837 - 11,395,269 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101534   ⟸   NM_001108064
- Sequence:
RefSeq Acc Id: XP_008763386   ⟸   XM_008765164
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008763385   ⟸   XM_008765163
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008763384   ⟸   XM_008765162
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008763383   ⟸   XM_008765161
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008763388   ⟸   XM_008765166
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017450289   ⟸   XM_017594800
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450290   ⟸   XM_017594801
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450299   ⟸   XM_017594810
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017450297   ⟸   XM_017594808
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017450296   ⟸   XM_017594807
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017450295   ⟸   XM_017594806
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017450291   ⟸   XM_017594802
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017450294   ⟸   XM_017594805
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017450293   ⟸   XM_017594804
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017450292   ⟸   XM_017594803
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017450298   ⟸   XM_017594809
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSRNOP00000008303   ⟸   ENSRNOT00000008303
RefSeq Acc Id: XP_038935965   ⟸   XM_039080037
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038935964   ⟸   XM_039080036
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038935961   ⟸   XM_039080033
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038935963   ⟸   XM_039080035
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038935957   ⟸   XM_039080029
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038935959   ⟸   XM_039080031
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038935968   ⟸   XM_039080040
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038935966   ⟸   XM_039080038
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038935972   ⟸   XM_039080044
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038935970   ⟸   XM_039080042
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038935967   ⟸   XM_039080039
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038935960   ⟸   XM_039080032
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935962   ⟸   XM_039080034
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038935971   ⟸   XM_039080043
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038935969   ⟸   XM_039080041
- Peptide Label: isoform X11
Protein Domains
C2H2-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307771 AgrOrtholog
Ensembl Genes ENSRNOG00000006217 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000008303 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008303 UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report rno:314598 UniProtKB/TrEMBL
NCBI Gene 314598 ENTREZGENE
PhenoGen Wiz PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt D3ZQQ2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-12-04 Wiz  WIZ zinc finger  Wiz  widely-interspaced zinc finger motifs  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Wiz  widely-interspaced zinc finger motifs   Wiz_predicted  widely-interspaced zinc finger motifs (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Wiz_predicted  widely-interspaced zinc finger motifs (predicted)      Symbol and Name status set to approved 70820 APPROVED