Midn (midnolin) - Rat Genome Database

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Gene: Midn (midnolin) Rattus norvegicus
Analyze
Symbol: Midn
Name: midnolin
RGD ID: 1309629
Description: Enables kinase binding activity. Acts upstream of or within negative regulation of glucokinase activity and negative regulation of insulin secretion. Predicted to be located in cytosol and nucleolus. Predicted to be active in nucleus. Orthologous to human MIDN (midnolin); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; glafenine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC314623
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,198,761 - 10,210,563 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl710,200,306 - 10,207,203 (-)EnsemblGRCr8
mRatBN7.279,548,100 - 9,559,605 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,549,650 - 9,559,752 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx712,432,617 - 12,439,315 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,307,956 - 14,314,654 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,169,052 - 12,175,753 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,414,303 - 12,426,712 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,414,733 - 12,424,367 (-)Ensemblrn6Rnor6.0
Rnor_5.0712,584,413 - 12,594,483 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4711,061,651 - 11,068,365 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera77,725,827 - 7,732,221 (-)NCBICelera
RGSC_v3.1711,061,650 - 11,065,347 (-)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
glafenine  (EXP)
hydroquinone O-beta-D-glucopyranoside  (ISO)
inulin  (ISO)
kojic acid  (ISO)
levonorgestrel  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N(4)-hydroxycytidine  (ISO)
okadaic acid  (ISO)
orphenadrine  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
testosterone undecanoate  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zalcitabine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
nucleolus  (IDA,IEA,ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Identification of the ubiquitin-like domain of midnolin as a new glucokinase interaction partner. Hofmeister-Brix A, etal., J Biol Chem. 2013 Dec 13;288(50):35824-39. doi: 10.1074/jbc.M113.526632. Epub 2013 Nov 1.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10974535   PMID:28724963   PMID:29311479  


Genomics

Comparative Map Data
Midn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,198,761 - 10,210,563 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl710,200,306 - 10,207,203 (-)EnsemblGRCr8
mRatBN7.279,548,100 - 9,559,605 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,549,650 - 9,559,752 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx712,432,617 - 12,439,315 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,307,956 - 14,314,654 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,169,052 - 12,175,753 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,414,303 - 12,426,712 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,414,733 - 12,424,367 (-)Ensemblrn6Rnor6.0
Rnor_5.0712,584,413 - 12,594,483 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4711,061,651 - 11,068,365 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera77,725,827 - 7,732,221 (-)NCBICelera
RGSC_v3.1711,061,650 - 11,065,347 (-)NCBI
Cytogenetic Map7q11NCBI
MIDN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,248,583 - 1,259,143 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,248,553 - 1,259,143 (+)Ensemblhg38GRCh38
GRCh37191,248,582 - 1,259,142 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,199,552 - 1,210,142 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34191,199,551 - 1,210,139NCBI
Celera191,182,784 - 1,193,375 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef191,016,694 - 1,033,236 (+)NCBIHuRef
CHM1_1191,248,788 - 1,259,383 (+)NCBICHM1_1
T2T-CHM13v2.0191,217,106 - 1,227,667 (+)NCBIT2T-CHM13v2.0
Midn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,984,106 - 79,994,202 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,984,106 - 79,994,202 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381080,146,005 - 80,158,368 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,148,272 - 80,158,368 (+)Ensemblmm10GRCm38
MGSCv371079,611,035 - 79,621,112 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361079,551,419 - 79,561,496 (+)NCBIMGSCv36mm8
Celera1081,163,119 - 81,173,223 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Midn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,651,347 - 6,661,846 (-)Ensembl
ChiLan1.0NW_0049554956,651,331 - 6,661,846 (-)NCBIChiLan1.0ChiLan1.0
MIDN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,590,718 - 5,601,602 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,827,404 - 4,838,188 (+)NCBINHGRI_mPanPan1
MIDN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,535,165 - 57,543,014 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,536,880 - 57,542,977 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2057,338,182 - 57,347,362 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02058,278,085 - 58,287,269 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,278,408 - 58,285,791 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,333,905 - 57,343,083 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,813,201 - 57,822,362 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,016,184 - 58,025,365 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Midn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,207,670 - 217,214,411 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588620,840 - 625,443 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936588620,353 - 627,113 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MIDN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,204,017 - 77,211,671 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1277,203,671 - 77,213,205 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,790,525 - 77,797,452 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MIDN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.161,017,141 - 1,027,577 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl61,018,290 - 1,027,618 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660817,835,876 - 7,846,419 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Midn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,415,288 - 7,425,608 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248287,417,157 - 7,427,331 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Midn
127 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:83
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000060698
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat

Markers in Region
RH131283  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,548,131 - 9,548,317 (+)MAPPERmRatBN7.2
Rnor_6.0712,414,335 - 12,414,520NCBIRnor6.0
Rnor_5.0712,584,440 - 12,584,625UniSTSRnor5.0
RGSC_v3.4711,060,133 - 11,060,318UniSTSRGSC3.4
Celera77,724,309 - 7,724,494UniSTS
RH 3.4 Map738.3UniSTS
Cytogenetic Map7q11UniSTS
BF389020  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,549,487 - 9,549,699 (+)MAPPERmRatBN7.2
Rnor_6.0712,415,691 - 12,415,902NCBIRnor6.0
Rnor_5.0712,585,796 - 12,586,007UniSTSRnor5.0
RGSC_v3.4711,061,489 - 11,061,700UniSTSRGSC3.4
Celera77,725,665 - 7,725,876UniSTS
RH 3.4 Map740.2UniSTS
Cytogenetic Map7q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000060698   ⟹   ENSRNOP00000057429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl710,200,306 - 10,207,203 (-)Ensembl
mRatBN7.2 Ensembl79,549,650 - 9,559,752 (-)Ensembl
Rnor_6.0 Ensembl712,414,733 - 12,424,367 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102859   ⟹   ENSRNOP00000085295
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl710,200,306 - 10,207,203 (-)Ensembl
mRatBN7.2 Ensembl79,549,650 - 9,559,752 (-)Ensembl
RefSeq Acc Id: NM_001191577   ⟹   NP_001178506
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,200,306 - 10,207,004 (-)NCBI
mRatBN7.279,549,650 - 9,556,350 (-)NCBI
Rnor_6.0712,415,853 - 12,422,551 (-)NCBI
Rnor_5.0712,584,413 - 12,594,483 (-)NCBI
Celera77,725,827 - 7,732,221 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240911   ⟹   XP_006240973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,198,761 - 10,210,527 (-)NCBI
mRatBN7.279,548,100 - 9,559,300 (-)NCBI
Rnor_6.0712,414,303 - 12,426,388 (-)NCBI
Rnor_5.0712,584,413 - 12,594,483 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240912   ⟹   XP_006240974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,198,761 - 10,208,684 (-)NCBI
mRatBN7.279,548,100 - 9,558,029 (-)NCBI
Rnor_6.0712,414,303 - 12,424,255 (-)NCBI
Rnor_5.0712,584,413 - 12,594,483 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240913   ⟹   XP_006240975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,198,761 - 10,210,563 (-)NCBI
mRatBN7.279,548,100 - 9,559,605 (-)NCBI
Rnor_6.0712,414,308 - 12,426,712 (-)NCBI
Rnor_5.0712,584,413 - 12,594,483 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240914   ⟹   XP_006240976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,198,761 - 10,209,616 (-)NCBI
mRatBN7.279,548,100 - 9,559,026 (-)NCBI
Rnor_6.0712,414,303 - 12,426,376 (-)NCBI
Rnor_5.0712,584,413 - 12,594,483 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765097   ⟹   XP_008763319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,198,761 - 10,206,734 (-)NCBI
mRatBN7.279,548,100 - 9,556,055 (-)NCBI
Rnor_6.0712,414,303 - 12,422,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594815   ⟹   XP_017450304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,198,761 - 10,209,631 (-)NCBI
mRatBN7.279,548,100 - 9,559,285 (-)NCBI
Rnor_6.0712,414,303 - 12,426,379 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001178506   ⟸   NM_001191577
- UniProtKB: D4AE48 (UniProtKB/TrEMBL),   A6K8Q2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240975   ⟸   XM_006240913
- Peptide Label: isoform X2
- UniProtKB: A6K8Q2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240973   ⟸   XM_006240911
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006240976   ⟸   XM_006240914
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006240974   ⟸   XM_006240912
- Peptide Label: isoform X1
- UniProtKB: D4AE48 (UniProtKB/TrEMBL),   A6K8Q2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763319   ⟸   XM_008765097
- Peptide Label: isoform X5
- UniProtKB: A6K8Q2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450304   ⟸   XM_017594815
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSRNOP00000057429   ⟸   ENSRNOT00000060698
Ensembl Acc Id: ENSRNOP00000085295   ⟸   ENSRNOT00000102859
Protein Domains
Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AE48-F1-model_v2 AlphaFold D4AE48 1-505 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695032
Promoter ID:EPDNEW_R5556
Type:single initiation site
Name:Midn_1
Description:midnolin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0712,424,341 - 12,424,401EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309629 AgrOrtholog
BioCyc Gene G2FUF-34919 BioCyc
Ensembl Genes ENSRNOG00000015434 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000060698 ENTREZGENE
  ENSRNOT00000060698.5 UniProtKB/Swiss-Prot
  ENSRNOT00000102859 ENTREZGENE
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
InterPro Midnolin UniProtKB/Swiss-Prot
  Ubiquitin-rel_dom UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report rno:314623 UniProtKB/Swiss-Prot
NCBI Gene 314623 ENTREZGENE
PANTHER MIDNOLIN UniProtKB/Swiss-Prot
  PTHR23010 UniProtKB/Swiss-Prot
Pfam ubiquitin UniProtKB/Swiss-Prot
PhenoGen Midn PhenoGen
PROSITE UBIQUITIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015434 RatGTEx
SMART UBQ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot
UniProt A0A8I6A3L5 ENTREZGENE, UniProtKB/TrEMBL
  A6K8Q1 ENTREZGENE, UniProtKB/TrEMBL
  A6K8Q2 ENTREZGENE, UniProtKB/TrEMBL
  D4AE48 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Midn  midnolin   Midn_predicted  midnolin (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Midn_predicted  midnolin (predicted)      Symbol and Name status set to approved 70820 APPROVED