LOC103692795 (uncharacterized LOC103692795) - Rat Genome Database

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Gene: LOC103692795 (uncharacterized LOC103692795) Rattus norvegicus
Analyze
Symbol: LOC103692795
Name: uncharacterized LOC103692795
RGD ID: 9149203
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: LOC102552467; uncharacterized LOC102552467
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8716,606,422 - 16,625,453 (-)NCBIGRCr8
mRatBN7.2715,911,077 - 15,922,065 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl715,903,881 - 15,929,311 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0720,482,096 - 20,485,714 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0720,550,013 - 20,554,598 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC103692795
94 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001838763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000097698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl715,911,319 - 15,929,060 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl715,911,312 - 15,929,123 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl715,911,312 - 15,929,311 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl715,903,881 - 15,929,060 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl715,911,320 - 15,929,311 (-)Ensembl
RefSeq Acc Id: XR_001838764
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,613,971 (-)NCBI
mRatBN7.2715,911,077 - 15,918,631 (-)NCBI
Rnor_6.0720,482,096 - 20,485,714 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005487468
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,620,849 (-)NCBI
mRatBN7.2715,911,077 - 15,922,065 (-)NCBI
RefSeq Acc Id: XR_005487469
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,609,838 (-)NCBI
mRatBN7.2715,911,077 - 15,914,495 (-)NCBI
RefSeq Acc Id: XR_010053621
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,625,036 (-)NCBI
RefSeq Acc Id: XR_010053622
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,625,036 (-)NCBI
RefSeq Acc Id: XR_010053623
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,625,035 (-)NCBI
RefSeq Acc Id: XR_010053624
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,625,033 (-)NCBI
RefSeq Acc Id: XR_010053625
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,625,035 (-)NCBI
RefSeq Acc Id: XR_010053626
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,625,453 (-)NCBI
RefSeq Acc Id: XR_010053627
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,624,721 (-)NCBI
RefSeq Acc Id: XR_010053628
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,625,036 (-)NCBI
RefSeq Acc Id: XR_010053629
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,625,038 (-)NCBI
RefSeq Acc Id: XR_010053630
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,625,034 (-)NCBI
RefSeq Acc Id: XR_010053631
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8716,606,422 - 16,625,037 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-34674 BioCyc
Ensembl Genes ENSRNOG00000070619 Ensembl
NCBI Gene LOC103692795 ENTREZGENE
PhenoGen LOC103692795 PhenoGen
RatGTEx ENSRNOG00000070619 RatGTEx
RNAcentral URS0000CD007D RNACentral
  URS0000CD04FD RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC103692795  uncharacterized LOC103692795  LOC102552467  uncharacterized LOC102552467  Data merged from RGD:7598387 737654 PROVISIONAL
2014-08-25 LOC103692795  uncharacterized LOC103692795      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-18 LOC102552467  uncharacterized LOC102552467      Symbol and Name status set to provisional 70820 PROVISIONAL