Zfp955a (zinc finger protein 955A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Zfp955a (zinc finger protein 955A) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Zfp955a
Name: zinc finger protein 955A
RGD ID: 1598322
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100361825; LOC314600; similar to zinc finger protein 422, related sequence 1; Zfp967; zinc finger protein 422, related sequence 1-like; zinc finger protein 967
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8713,406,328 - 13,420,160 (-)NCBIGRCr8
mRatBN7.2712,756,142 - 12,769,776 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl712,756,141 - 12,769,796 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx715,401,734 - 15,415,404 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0717,279,055 - 17,292,725 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0715,315,064 - 15,328,696 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0715,775,714 - 15,789,348 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl715,785,410 - 15,790,366 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0715,947,718 - 15,961,352 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4714,089,462 - 14,114,688 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in Zfp955a
106 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:478
Count of miRNA genes:253
Interacting mature miRNAs:304
Transcripts:ENSRNOT00000073235
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat

Markers in Region
BG379587  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2712,758,640 - 12,758,761 (-)MAPPERmRatBN7.2
mRatBN7.2712,621,313 - 12,621,434 (+)MAPPERmRatBN7.2
Rnor_6.0715,786,729 - 15,786,849NCBIRnor6.0
Rnor_5.0715,958,733 - 15,958,853UniSTSRnor5.0
RGSC_v3.4714,113,497 - 14,113,617UniSTSRGSC3.4
Celera710,613,130 - 10,613,250UniSTS
RH 3.4 Map766.8UniSTS
Cytogenetic Map7q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 30 5 4 4 1 1 74 22 38 1 1
Low 3 13 52 37 19 37 7 10 13 3 10 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000073235   ⟹   ENSRNOP00000065229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl712,756,141 - 12,769,796 (-)Ensembl
Rnor_6.0 Ensembl715,785,447 - 15,790,366 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082664   ⟹   ENSRNOP00000071479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl715,785,410 - 15,788,262 (+)Ensembl
RefSeq Acc Id: NM_001126281   ⟹   NP_001119753
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8713,406,528 - 13,420,160 (-)NCBI
mRatBN7.2712,756,142 - 12,769,776 (-)NCBI
Rnor_6.0715,775,714 - 15,789,348 (+)NCBI
Rnor_5.0715,947,718 - 15,961,352 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063263408   ⟹   XP_063119478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8713,406,328 - 13,420,010 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001119753 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119478 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI60923 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065229
  ENSRNOP00000065229.3
Reference Protein Sequences
RefSeq Acc Id: NP_001119753   ⟸   NM_001126281
- Sequence:
RefSeq Acc Id: ENSRNOP00000071479   ⟸   ENSRNOT00000082664
RefSeq Acc Id: ENSRNOP00000065229   ⟸   ENSRNOT00000073235
RefSeq Acc Id: XP_063119478   ⟸   XM_063263408
- Peptide Label: isoform X1
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K0K0-F1-model_v2 AlphaFold A0A0G2K0K0 1-591 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1598322 AgrOrtholog
BioCyc Gene G2FUF-34769 BioCyc
Ensembl Genes ENSRNOG00000048577 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000073235 ENTREZGENE
  ENSRNOT00000073235.3 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8362600 IMAGE-MGC_LOAD
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:314600 UniProtKB/TrEMBL
MGC_CLONE MGC:188677 IMAGE-MGC_LOAD
NCBI Gene 314600 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 101 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp955a PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000048577 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt B1H2A1_RAT UniProtKB/TrEMBL
  M0R713_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Zfp955a  zinc finger protein 955A  LOC100361825  zinc finger protein 422, related sequence 1-like  Data merged from RGD:2319350 737654 PROVISIONAL
2012-11-27 Zfp955a  zinc finger protein 955A  Zfp967  zinc finger protein 967  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-09-17 Zfp967  zinc finger protein 967  LOC314600  similar to zinc finger protein 422, related sequence 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100361825  zinc finger protein 422, related sequence 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC314600  similar to zinc finger protein 422, related sequence 1      Symbol and Name status set to provisional 70820 PROVISIONAL