Cd320 (CD320 molecule) - Rat Genome Database

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Gene: Cd320 (CD320 molecule) Rattus norvegicus
Analyze
Symbol: Cd320
Name: CD320 molecule
RGD ID: 1305860
Description: Predicted to enable calcium ion binding activity; cargo receptor activity; and cobalamin binding activity. Predicted to be involved in cobalamin metabolic process; cobalamin transport; and positive regulation of B cell activation. Predicted to act upstream of or within regulation of vitamin metabolic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of plasma membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in methylmalonic acidemia due to transcobalamin receptor defect. Orthologous to human CD320 (CD320 molecule); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CD320 antigen; CD320 antigen-like; LOC362851; RGD1305860; similar to 8D6 antigen; TCblR; transcobalamin receptor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2714,626,171 - 14,631,976 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl714,609,146 - 14,631,976 (+)Ensembl
Rnor_6.0718,700,445 - 18,706,244 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,700,344 - 18,706,244 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0718,878,058 - 18,883,844 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4716,338,136 - 16,343,892NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1716,338,135 - 16,343,892NCBI
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10727470   PMID:18779389   PMID:19946888   PMID:20524213   PMID:23376485   PMID:23430977   PMID:27411955  


Genomics

Comparative Map Data
Cd320
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2714,626,171 - 14,631,976 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl714,609,146 - 14,631,976 (+)Ensembl
Rnor_6.0718,700,445 - 18,706,244 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,700,344 - 18,706,244 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0718,878,058 - 18,883,844 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4716,338,136 - 16,343,892NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1716,338,135 - 16,343,892NCBI
Cytogenetic Map7q13NCBI
CD320
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,302,127 - 8,308,358 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl198,302,127 - 8,308,358 (-)EnsemblGRCh38hg38GRCh38
GRCh37198,367,011 - 8,373,242 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36198,273,011 - 8,279,239 (-)NCBINCBI36hg18NCBI36
Build 34198,273,010 - 8,279,239NCBI
Celera198,223,534 - 8,229,765 (-)NCBI
Cytogenetic Map19p13.2NCBI
HuRef198,021,040 - 8,027,272 (-)NCBIHuRef
CHM1_1198,366,510 - 8,372,742 (-)NCBICHM1_1
T2T-CHM13v2.0198,288,656 - 8,294,880 (-)NCBI
Cd320
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,062,065 - 34,068,748 (+)NCBIGRCm39mm39
GRCm39 Ensembl1734,062,065 - 34,068,748 (+)Ensembl
GRCm381733,843,091 - 33,849,774 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,843,091 - 33,849,774 (+)EnsemblGRCm38mm10GRCm38
MGSCv371733,980,036 - 33,986,719 (+)NCBIGRCm37mm9NCBIm37
MGSCv361733,449,214 - 33,456,005 (+)NCBImm8
Celera1736,600,303 - 36,608,793 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Cd320
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,084,474 - 1,093,111 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,084,523 - 1,089,395 (+)NCBIChiLan1.0ChiLan1.0
CD320
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1198,438,955 - 8,445,464 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl198,438,955 - 8,445,464 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0197,587,760 - 7,594,055 (-)NCBIMhudiblu_PPA_v0panPan3
CD320
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,886,087 - 52,890,361 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,886,087 - 52,890,366 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,687,555 - 52,691,829 (-)NCBI
ROS_Cfam_1.02053,414,068 - 53,418,342 (-)NCBI
ROS_Cfam_1.0 Ensembl2053,414,068 - 53,418,348 (-)Ensembl
UMICH_Zoey_3.12052,616,774 - 52,621,039 (-)NCBI
UNSW_CanFamBas_1.02053,062,048 - 53,066,321 (-)NCBI
UU_Cfam_GSD_1.02053,293,654 - 53,297,928 (-)NCBI
Cd320
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118212,687,660 - 212,692,222 (+)NCBI
SpeTri2.0NW_0049365885,142,561 - 5,147,111 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD320
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,965,672 - 70,970,288 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,961,897 - 70,970,289 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CD320
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,666,201 - 7,673,088 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl67,665,895 - 7,673,599 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607412,617,008 - 12,624,955 (+)NCBIVero_WHO_p1.0
Cd320
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248281,102,306 - 1,106,211 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248281,102,016 - 1,106,314 (-)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:184
Count of miRNA genes:131
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000009067
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 55 39 19 39 6 9 74 35 41 11 6
Low 2 2 2 2 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000009067   ⟹   ENSRNOP00000009067
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl714,626,183 - 14,631,971 (+)Ensembl
Rnor_6.0 Ensembl718,700,344 - 18,706,244 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000009425   ⟹   ENSRNOP00000009425
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl714,609,262 - 14,622,564 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095587   ⟹   ENSRNOP00000084734
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl714,609,240 - 14,622,598 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104433   ⟹   ENSRNOP00000090950
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl714,609,146 - 14,631,976 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119702   ⟹   ENSRNOP00000094620
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl714,628,707 - 14,631,976 (+)Ensembl
RefSeq Acc Id: NM_001014201   ⟹   NP_001014223
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2714,626,220 - 14,631,976 (+)NCBI
Rnor_6.0718,700,488 - 18,706,244 (+)NCBI
Rnor_5.0718,878,058 - 18,883,844 (+)NCBI
RGSC_v3.4716,338,136 - 16,343,892 (+)RGD
Sequence:
RefSeq Acc Id: XM_006241128   ⟹   XP_006241190
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2714,626,171 - 14,631,976 (+)NCBI
Rnor_6.0718,700,445 - 18,706,244 (+)NCBI
Rnor_5.0718,878,058 - 18,883,844 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001014223 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380776 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241190 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88861 (Get FASTA)   NCBI Sequence Viewer  
  Q5HZW5 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001014223   ⟸   NM_001014201
- Peptide Label: precursor
- UniProtKB: Q5HZW5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006241190   ⟸   XM_006241128
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000009067   ⟸   ENSRNOT00000009067
RefSeq Acc Id: ENSRNOP00000084734   ⟸   ENSRNOT00000095587
RefSeq Acc Id: ENSRNOP00000090950   ⟸   ENSRNOT00000104433
RefSeq Acc Id: ENSRNOP00000009425   ⟸   ENSRNOT00000009425
RefSeq Acc Id: ENSRNOP00000094620   ⟸   ENSRNOT00000119702
Protein Domains
LDL-receptor class A

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5HZW5-F1-model_v2 AlphaFold Q5HZW5 1-264 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695090
Promoter ID:EPDNEW_R5614
Type:initiation region
Name:Cd320_1
Description:CD320 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0718,700,475 - 18,700,535EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305860 AgrOrtholog
BioCyc Gene G2FUF-34705 BioCyc
Ensembl Genes ENSRNOG00000006901 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000009067 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000084734.1 UniProtKB/TrEMBL
  ENSRNOP00000090950.1 UniProtKB/TrEMBL
  ENSRNOP00000094620.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009067 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000095587.1 UniProtKB/TrEMBL
  ENSRNOT00000104433.1 UniProtKB/TrEMBL
  ENSRNOT00000119702.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.400.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7310701 IMAGE-MGC_LOAD
InterPro LDL_receptor-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NDUA7 UniProtKB/TrEMBL
KEGG Report rno:362851 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105707 IMAGE-MGC_LOAD
NCBI Gene 362851 ENTREZGENE
PANTHER PTHR12485 UniProtKB/TrEMBL
Pfam CI-B14_5a UniProtKB/TrEMBL
  Ldl_recept_a UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cd320 PhenoGen
PRINTS LDLRECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LDLRA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LDLa UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57424 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A2J5_RAT UniProtKB/TrEMBL
  A0A8I6AEH1_RAT UniProtKB/TrEMBL
  A0A8I6AK05_RAT UniProtKB/TrEMBL
  CD320_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Cd320  CD320 molecule  LOC100365110  CD320 antigen-like  Data Merged 1643240 APPROVED
2013-05-24 Cd320  CD320 molecule  LOC688345  similar to 8D6 antigen  Data Merged 1643240 APPROVED
2010-05-05 LOC100365110  CD320 antigen-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-06-27 Cd320  CD320 molecule  Cd320  CD320 antigen  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC688345  similar to 8D6 antigen      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Cd320  CD320 antigen  RGD1305860  similar to 8D6 antigen  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1305860  similar to 8D6 antigen  RGD1305860_predicted  similar to 8D6 antigen (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305860_predicted  similar to 8D6 antigen (predicted)  LOC362851_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362851_predicted  similar to 8D6 antigen (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL