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Gene: Rtcb (RNA 2',3'-cyclic phosphate and 5'-OH ligase) Rattus norvegicus
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Symbol: Rtcb
Name: RNA 2',3'-cyclic phosphate and 5'-OH ligase
RGD ID: 1303261
Description: Predicted to have RNA ligase (ATP) activity and vinculin binding activity. Predicted to be involved in in utero embryonic development; placenta development; and tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate. Predicted to localize to several cellular components, including endoplasmic reticulum membrane; nucleus; and tRNA-splicing ligase complex. Orthologous to human RTCB (RNA 2',3'-cyclic phosphate and 5'-OH ligase); PARTICIPATES IN tRNA maturation pathway; INTERACTS WITH bisphenol A; Brodifacoum; ethanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 3'-phosphate/5'-hydroxy nucleic acid ligase; hypothetical protein LOC362855; LOC362855; P55; RNA-splicing ligase RtcB homolog; tRNA-splicing ligase RtcB homolog
Orthologs:
Homo sapiens (human) : RTCB (RNA 2',3'-cyclic phosphate and 5'-OH ligase)  HGNC  Alliance
Mus musculus (house mouse) : Rtcb (RNA 2',3'-cyclic phosphate and 5'-OH ligase)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rtcb (RNA 2',3'-cyclic phosphate and 5'-OH ligase)
Pan paniscus (bonobo/pygmy chimpanzee) : RTCB (RNA 2',3'-cyclic phosphate and 5'-OH ligase)
Canis lupus familiaris (dog) : RTCB (RNA 2',3'-cyclic phosphate and 5'-OH ligase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rtcb (RNA 2',3'-cyclic phosphate and 5'-OH ligase)
Sus scrofa (pig) : RTCB (RNA 2',3'-cyclic phosphate and 5'-OH ligase)
Chlorocebus sabaeus (African green monkey) : RTCB (RNA 2',3'-cyclic phosphate and 5'-OH ligase)
Heterocephalus glaber (naked mole-rat) : Rtcb (RNA 2',3'-cyclic phosphate and 5'-OH ligase)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0723,913,830 - 23,933,191 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl723,913,830 - 23,933,191 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0724,063,354 - 24,082,716 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4720,045,978 - 20,065,340 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1720,059,163 - 20,079,411 (+)NCBI
Celera715,140,132 - 15,159,379 (+)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Rtcb
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1303261
Created: 2004-12-03
Species: Rattus norvegicus
Last Modified: 2020-09-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.