Mcs18 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Mcs18 (Mammary carcinoma susceptibility QTL 18) Rattus norvegicus

Symbol: Mcs18
Name: Mammary carcinoma susceptibility QTL 18
RGD ID: 1600379
Also known as: Chr 2 QTL
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: 2.6
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.227,887,772 - 42,804,738RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.025,417,336 - 42,777,046RGD_MAPPER_PIPELINERnor6.0
Rnor_5.025,396,621 - 61,826,080RGDRnor5.0
RGSC_v3.425,601,528 - 35,247,994RGDRGSC3.4
RGSC_v3.125,627,976 - 35,062,282RGD
Cross Type: backcross
Strains Crossed: WKY/Ztm SPRD/Ztm 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
SPRD/Ztm  (IEA)
WKY/Ztm  (IEA)

References


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1305526Fam172afamily with sequence similarity 172, member A275538738018183Rat
1589456Pou5f2POU domain class 5, transcription factor 2279075047908738Rat
7509688LOC102548021protein FAM98B-like280008068013311Rat
41141624LOC120100651uncharacterized LOC120100651280178818035957Rat
621682Nr2f1nuclear receptor subfamily 2, group F, member 1280403758050123Rat
7645336LOC102549789uncharacterized LOC102549789280530298304831Rat
1583248LOC685054similar to solute carrier family 25, member 5282198768226468Rat
41088779LOC120101163U6 spliceosomal RNA282619198262025Rat
41008983LOC120101325small nucleolar RNA SNORA17283347328334859Rat
6490176LOC10091188360S ribosomal protein L6-like286091558611368Rat
7722382LOC102548480low molecular weight phosphotyrosine protein phosphatase-like21001410310014541Rat
40942615LOC120100637igE-binding protein-like21066856710673066Rat
1596482Rps8-ps1ribosomal protein S8, pseudogene 121098464010985313Rat
1596458Tdg-ps1thymine-DNA glycosylase, pseudogene 121106041111064568Rat
1359478Arrdc3arrestin domain containing 321113744311149978Rat
40974287LOC120100652uncharacterized LOC12010065221113764811139734Rat
1590822LOC365970similar to 2B2821122513511226004Rat
41118210LOC120100653uncharacterized LOC12010065321124605711288544Rat
1562101Adgrv1adhesion G protein-coupled receptor V121133143411911713Rat
40980043LOC120101384U1 spliceosomal RNA21139192911392087Rat
41391875LOC120100655ubiquitin-conjugating enzyme E2 L3-like21163469611636749Rat
41361600LOC120100654ribosome-recycling factor, mitochondrial-like21168969211690540Rat
1595695LOC499494similar to tubulin, alpha 121190356111905006Rat
1593816LOC685441similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI)21192000311920552Rat
1308805Lysmd3LysM domain containing 321193378711939944Rat
1593792Polr3gRNA polymerase III subunit G21194521511986125Rat
1306703Mblac2metallo-beta-lactamase domain containing 221198607512028882Rat
620249Cetn3centrin 321208902512101828Rat
11506640LOC108349914uncharacterized LOC10834991421215497012204382Rat
41256822LOC120100656uncharacterized LOC12010065621217127812173747Rat
2321913LOC100360544fibrillarin-like21248019912571223Rat
7496117LOC10254886060S ribosomal protein L19-like21258207912590457Rat
41318360NEWGENE_40933693transfer RNA proline (anticodon GGG)21265585012655924Rat
41102332LOC120101160U6 spliceosomal RNA21267725212677358Rat
41072862LOC120100657uncharacterized LOC12010065721325260413344832Rat
9106115LOC10369142560S ribosomal protein L7a pseudogene21326822913268696Rat
11380414LOC108349915uncharacterized LOC10834991521327087513302846Rat
10043200Rps27a-ps29ribosomal protein S27a, pseudogene 2921338964113390087Rat
41115917LOC120100658uncharacterized LOC12010065821343900513528948Rat
41175335LOC120101191U6 spliceosomal RNA21372052213720616Rat
9087824LOC103691411uncharacterized LOC10369141121379350613882765Rat
7710292LOC102552429uncharacterized LOC10255242921391630013972744Rat
1563119Mef2cmyocyte enhancer factor 2C21397329914136065Rat
9362811LOC103691412uncharacterized LOC10369141221409777814109233Rat
40960165LOC120100659uncharacterized LOC12010065921417428814363747Rat
4888542Mir3597-2microRNA 3597-221419771114197828Rat
2325602Mir9-2microRNA 9-221419772414197810Rat
11426534LOC10834991660S ribosomal protein L7a pseudogene21441693714417836Rat
6502717LOC10090962560S acidic ribosomal protein P0-like21447911014479737Rat
11402434LOC108349917uncharacterized LOC10834991721451189214552563Rat
7652976LOC102554243uncharacterized LOC10255424321456843714572006Rat
41330271LOC120100660uncharacterized LOC12010066021459565214715634Rat
7705669LOC102553998stathmin-like21467558414683994Rat
1309660Tmem161btransmembrane protein 161B21471445114793809Rat
7680557LOC102554306uncharacterized LOC10255430621483017614840060Rat
41389417LOC120100661uncharacterized LOC12010066121526485415280304Rat
41106288LOC120100548uncharacterized LOC12010054821529537015301580Rat
41326689LOC120100662uncharacterized LOC12010066221530437215326712Rat
7599584LOC102554363uncharacterized LOC10255436321532684715337972Rat
1594384LOC499500similar to transcriptional adaptor 3-like21570446215705839Rat
41042083LOC120100549uncharacterized LOC12010054921581321215815878Rat
69419Ccnhcyclin H21583483315855643Rat
3537Rasa1RAS p21 protein activator 121585770415940757Rat
7525791LOC102555062uncharacterized LOC10255506221594866515969617Rat
7566528LOC102555137AT-rich interactive domain-containing protein 4A-like21597062615973408Rat
41232309LOC12010063860S ribosomal protein L7a-like21630069116367393Rat
1559647RGD1559647similar to Psmc6 protein21653532416536530Rat
1587831LOC685943similar to family with sequence similarity 51, member A1 homolog21659195116592611Rat
7539922LOC102551194uncharacterized LOC10255119421661379816615809Rat
11367373LOC108350221histone H2A.Z pseudogene21669623316696586Rat
1587804LOC685971similar to eukaryotic translation elongation factor 1 delta21678312016783583Rat
2300145Cox7ccytochrome c oxidase subunit 7C21684177116843796Rat
727842LOC252890Z39 small nucleolar RNA21684197116842030Rat
1587780LOC685995similar to discoidin, CUB and LCCL domain containing 121695316516959244Rat
1594513LOC365635hypothetical LOC36563521719131017192198Rat
9225015LOC103694538uncharacterized LOC10369453821735981217380100Rat
2320545LOC100361218zinc finger and BTB domain containing 26-like21738010717440459Rat
41062866LOC120100550igE-binding protein-like21907983519081617Rat
1588593LOC294635similar to spindlin isoform 221916563719166834Rat
6499419LOC100910216casein kinase I isoform alpha-like21934243119343443Rat
1588887Edil3EGF like repeats and discoidin domains 321989039620405028Rat
41010025LOC120101274small nucleolar RNA SNORA4822032253220322680Rat
41056460LOC120101144U6 spliceosomal RNA22055168520551791Rat
1588877LOC688411similar to eukaryotic translation elongation factor 1 alpha 222062239720623912Rat
2412Hapln1hyaluronan and proteoglycan link protein 122063164020696388Rat
619940Vcanversican22076171820860637Rat
1359573Xrcc4X-ray repair cross complementing 422094846421197705Rat
11375591LOC10835015340S ribosomal protein S6 pseudogene22114137121151233Rat
2323318Tmem167atransmembrane protein 167A22119772821216746Rat
41267733LOC120101372small nucleolar RNA U10922120778021207914Rat
1564936Atp6ap1lATPase H+ transporting accessory protein 1 like22203754222079376Rat
41076301LOC120100663uncharacterized LOC12010066322205753722070249Rat
621039Rps23ribosomal protein S2322207933922080909Rat
1587624Atg10autophagy related 1022210930422398313Rat
41224681LOC120100664uncharacterized LOC12010066422223421222241323Rat
41341754LOC120100665uncharacterized LOC12010066522257644822585015Rat
1562968Ssbp2single-stranded DNA binding protein 222265048822933696Rat
9137253LOC103691419uncharacterized LOC10369141922281453422818085Rat
41268252NEWGENE_40940579transfer RNA leucine (anticodon AAG)22289107822891152Rat
41184943LOC120101307small nucleolar RNA SNORA1722297417022974295Rat
619752Acot12acyl-CoA thioesterase 1222298686723027538Rat
1307450Zcchc9zinc finger CCHC-type containing 922303815623048249Rat
41075573LOC120100551uncharacterized LOC12010055122306050123065411Rat
61977Ckmt2creatine kinase, mitochondrial 222307992023110518Rat
69413Rasgrf2RAS protein-specific guanine nucleotide-releasing factor 222311361323361537Rat
41080950LOC120100666uncharacterized LOC12010066622342734623431346Rat
1563954Msh3mutS homolog 322344432623585777Rat
2500Dhfrdihydrofolate reductase22358587623611199Rat
1594383Ankrd34bankyrin repeat domain 34B22365108323668041Rat
1561110Fam151bfamily with sequence similarity 151, member B22367431723710420Rat
1564784Zfyve16zinc finger FYVE-type containing 1622371301823757576Rat
1562395Spz1spermatogenic leucine zipper 122379674123798337Rat
1594512LOC365643hypothetical LOC36564322381914923820836Rat
621571Serinc5serine incorporator 522384689923950346Rat
62046Thbs4thrombospondin 422398315824025289Rat
1583002Mtx3metaxin 322406633224079708Rat
11458063LOC108350222uncharacterized LOC10835022222409945324103141Rat
11388888LOC108349921uncharacterized LOC10834992122418322224209061Rat
1582992Cmya5cardiomyopathy associated 522427952024378253Rat
1306438Tent2terminal nucleotidyltransferase 222438013524432099Rat
9307820LOC103691422uncharacterized LOC10369142222446878724481554Rat
628725Homer1homer scaffold protein 122454277724645715Rat
1585601Jmyjunction mediating and regulatory protein, p53 cofactor22466210424730955Rat
7572801LOC102548141uncharacterized LOC10254814122476423824771284Rat
621496Bhmtbetaine-homocysteine S-methyltransferase22485987124879449Rat
9314470LOC10369142360S ribosomal protein L36 pseudogene22488384524884266Rat
1359418Bhmt2betaine-homocysteine S-methyltransferase 222489552524912475Rat
620453Dmgdhdimethylglycine dehydrogenase22491260024987533Rat
2158Arsbarylsulfatase B22500221025162675Rat
41078389LOC120101271small nucleolar RNA SNORA4822509230325092451Rat
41087919LOC120101241small nucleolar RNA SNORA2422509833125098459Rat
41152305LOC120100667uncharacterized LOC12010066722511381725136139Rat
1309869Lhfpl2LHFPL tetraspan subfamily member 222528177125428128Rat
2322653LOC100360196SNRPN upstream reading frame22541723325417480Rat
1596440LOC685256similar to small nuclear ribonucleoparticle-associated protein22541765525418541Rat
3625Scamp1secretory carrier membrane protein 122543395825516734Rat
1310256Ap3b1adaptor related protein complex 3 subunit beta 122560006925800937Rat
11374962LOC108349922uncharacterized LOC10834992222590716025922806Rat
1311538Tbcatubulin folding cofactor A22601171426065909Rat
727945Otporthopedia homeobox22610815826116359Rat
11423879LOC108350223uncharacterized LOC10835022322611811926123605Rat
1306363Wdr41WD repeat domain 4122622279726273840Rat
735041Pde8bphosphodiesterase 8B22627511726479725Rat
41346751LOC120101137U6 spliceosomal RNA22641538926415495Rat
41338505LOC120100668succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like22654966026551984Rat
6488109LOC100912266uncharacterized LOC10091226622655406226563136Rat
7716052LOC102548698uncharacterized LOC10254869822655721926579051Rat
1309665Zbed3zinc finger, BED-type containing 322658762026600177Rat
41122070LOC120101373small nucleolar RNA SNORA4722659426026594397Rat
1587155LOC679528similar to peroxiredoxin 122660316726603947Rat
1310888Aggf1angiogenic factor with G patch and FHA domains 122661933626646050Rat
41244732LOC120101365small nucleolar RNA SNORD7822668496026685025Rat
2403Crhbpcorticotropin releasing hormone binding protein22669240326704710Rat
1562902S100zS100 calcium binding protein Z22673878026753611Rat
620866F2rl1F2R like trypsin receptor 122677227426785226Rat
1566212RGD1566212similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)22683636226836853Rat
2586F2rcoagulation factor II (thrombin) receptor22686934326885856Rat
2321734Iqgap2IQ motif containing GTPase activating protein 222689483627170270Rat
40941687LOC120100669uncharacterized LOC12010066922691733826929267Rat
620871F2rl2coagulation factor II (thrombin) receptor-like 222697205426977098Rat
40996532LOC120100670uncharacterized LOC12010067022698515927001342Rat
41401989LOC120100672uncharacterized LOC12010067222709767727102253Rat
41131202LOC120100671uncharacterized LOC12010067122709867227103241Rat
41124781LOC120101383U1 spliceosomal RNA22717466527174822Rat
41151137LOC120100552uncharacterized LOC12010055222717960227186615Rat
3156Ndufs6NADH:ubiquinone oxidoreductase subunit S622720171327202126Rat
619718Sv2csynaptic vesicle glycoprotein 2c22723293327428479Rat
40986804LOC120101201U6 spliceosomal RNA22740036427400468Rat
1584743LOC679799similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar protein NO38)22760092327601921Rat
1594510LOC365650similar to metal response element binding transcription factor 222771107527712546Rat
1310597Poc5POC5 centriolar protein22771974527748805Rat
2325067Ankdd1bankyrin repeat and death domain containing 1B22775030127814291Rat
620058PolkDNA polymerase kappa22782222827882331Rat
1309131Cert1ceramide transporter 122788254627987090Rat
2803Hmgcr3-hydroxy-3-methylglutaryl-CoA reductase22799752328018983Rat
2323520Ankrd31ankyrin repeat domain 3122807918728241722Rat
41215863LOC12010067440S ribosomal protein S26-like22809326228094806Rat
7679991LOC102554085chromobox protein homolog 3-like22818840428189044Rat
40929069LOC120101190U6 spliceosomal RNA22822452328224621Rat
1563891Gcnt4glucosaminyl (N-acetyl) transferase 422825331128329381Rat
41307324LOC120100675uncharacterized LOC12010067522834563728381004Rat
1590893Fam169afamily with sequence similarity 169, member A22838416228441361Rat
11374184LOC108349924NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 pseudogene22838740428399084Rat
621335Nsa2NSA2 ribosome biogenesis factor22844314228449393Rat
1309854Gfm2GTP dependent ribosome recycling factor mitochondrial 222844945228488200Rat
1307607Hexbhexosaminidase subunit beta22848399728504165Rat
41266376LOC120100553uncharacterized LOC12010055322851713628519470Rat
41403936LOC120100676uncharacterized LOC12010067622852018928542905Rat
1303152Enc1ectodermal-neural cortex 122855067028562591Rat
41210646LOC120100677uncharacterized LOC12010067722873301528741444Rat
7638416LOC102550768uncharacterized LOC10255076822879516728849077Rat
40966847LOC120100678uncharacterized LOC12010067822884711828850605Rat
7505570LOC102551027uncharacterized LOC10255102722895496928999400Rat
7571143LOC102551152uncharacterized LOC10255115222907398029084474Rat
7613080LOC102551263uncharacterized LOC10255126322909986529102988Rat
1594508LOC365654similar to ATP synthase beta chain, mitochondrial precursor22913567729137702Rat
9179183LOC10369508940S ribosomal protein S13 pseudogene22923873429239646Rat
1307061Arhgef28Rho guanine nucleotide exchange factor 2822926388629560595Rat
41284150LOC120101361small nucleolar RNA SNORA4022927320929273341Rat
1310992Utp15UTP15, small subunit processome component22959440529612819Rat
1303108Ankra2ankyrin repeat family A member 222961286729623748Rat
1308095Btf3basic transcription factor 322965976429666898Rat
41157206LOC120100679uncharacterized LOC12010067922966705629674448Rat
41083090LOC120101283small nucleolar RNA SNORA1722969142429691555Rat
621712Foxd1forkhead box D122970255829704978Rat
41170998LOC120100680uncharacterized LOC12010068022978892429842718Rat
41172133LOC120101204U6 spliceosomal RNA22984966929849772Rat
41253697LOC120100554uncharacterized LOC12010055422990222129907787Rat
1561129Tmem174transmembrane protein 17422999207029993601Rat
41026454LOC120100681uncharacterized LOC12010068123002762630029202Rat
11503988LOC108349927uncharacterized LOC10834992723002970630033330Rat
1359492Tmem171transmembrane protein 17123003527830045996Rat
7676687LOC102546725uncharacterized LOC10254672523004768530053470Rat
1565396Fcho2FCH and mu domain containing endocytic adaptor 223007914330181639Rat
2320812LOC100364548hypothetical LOC10036454823009310330100126Rat
1308372Tnpo1transportin 123020752930300162Rat
41035860LOC120100682translation initiation factor IF-223029947430302657Rat
1590323LOC684444similar to HIStone family member (his-41)23038709430387613Rat
41230016LOC120100683uncharacterized LOC12010068323052273030537147Rat
2322904Zfp366zinc finger protein 36623057855230640546Rat
1310308Ptcd2pentatricopeptide repeat domain 223071227630739968Rat
1311829Mrps27mitochondrial ribosomal protein S2723074000730808577Rat
3043Map1bmicrotubule-associated protein 1B23081726130910458Rat
7654966LOC102553545uncharacterized LOC10255354523091063030933322Rat
1594382LOC499517hypothetical LOC49951723098056430981584Rat
41064988LOC120100684uncharacterized LOC12010068423103987531070957Rat
41165958LOC120101347small nucleolar RNA SNORA1723106447131064584Rat
7635624LOC102553770uncharacterized LOC10255377023106828531106257Rat
41181423LOC120100685uncharacterized LOC12010068523110902531110232Rat
41371773LOC120100686uncharacterized LOC12010068623111348831132788Rat
1585838LOC680951similar to ubiquitin-conjugating enzyme E2 variant 123124673231247635Rat
2272CartptCART prepropeptide23125509831257452Rat
1310279Mccc2methylcrotonyl-CoA carboxylase subunit 223130492731375978Rat
1308512Bdp1B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB23145752331470119Rat
1565105Serf1small EDRK-rich factor 123147577731482030Rat
41046346LOC120100687uncharacterized LOC12010068723148769831489974Rat
620755Smn1survival of motor neuron 1, telomeric23149001831501065Rat
621281Naip6NLR family, apoptosis inhibitory protein 623150742331559098Rat
1559914Naip5NLR family, apoptosis inhibitory protein 523155770631608722Rat
1310499Gtf2h2general transcription factor IIH subunit 223162375231652697Rat
1594507LOC365655similar to ribosomal protein L22 like 123165479631655280Rat
620089Oclnoccludin23165721731707466Rat
41007563LOC120101130U4 spliceosomal RNA23171010731710236Rat
40971037LOC120100688uncharacterized LOC12010068823171368231723623Rat
2320700LOC100361161bolA-like 1-like23172813531729259Rat
7627562LOC102557393uncharacterized LOC10255739323174211431746654Rat
1306909Marveld2MARVEL domain containing 223174265231764150Rat
41247549LOC12009309960S ribosomal protein L36-like23175516131755493Rat
1309515Rad17RAD17 checkpoint clamp loader component23176426031794542Rat
727861Taf9TATA-box binding protein associated factor 923179431631798324Rat
7387335Ak6adenylate kinase 623179431631806375Rat
1561673Ccdc125coiled-coil domain containing 12523180912031835538Rat
621124Cdk7cyclin-dependent kinase 723184054531865447Rat
40967037LOC120100689protein KTI12 homolog23185263531853927Rat
1309315Mrps36mitochondrial ribosomal protein S3623187054931878335Rat
1583506Cenphcentromere protein H23189425331910182Rat
41183723LOC120100690uncharacterized LOC12010069023189724131902191Rat
2291Ccnb1cyclin B123191219031921163Rat
1306931Slc30a5solute carrier family 30 member 523194574531975969Rat
41251155LOC12010063960S ribosomal protein L7a-like23201909732019924Rat
7613395LOC102555263uncharacterized LOC10255526323210901732216220Rat
11494182LOC10834993260S ribosomal protein L21 pseudogene23252930632531079Rat
7668930LOC102556051uncharacterized LOC10255605123253577832855354Rat
41022741LOC120100691uncharacterized LOC12010069123261736632625636Rat
3329Pik3r1phosphoinositide-3-kinase regulatory subunit 123287894232963611Rat
11390954LOC108350224uncharacterized LOC10835022423313033033134546Rat
41078971LOC120100692uncharacterized LOC12010069223343819133470167Rat
41325769LOC120101262small nucleolar RNA SNORA4823344337933443518Rat
9191663LOC103691443uncharacterized LOC10369144323344482133447613Rat
1595422LOC681402similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)23347098033472009Rat
41258804LOC120101170U6 spliceosomal RNA23347197733472081Rat
41007476LOC120100555caspase-6-like23351689533520476Rat
7497054LOC102546726uncharacterized LOC10254672623355267833777029Rat
41190503LOC120100693uncharacterized LOC12010069323367858233734740Rat
11381588LOC108349935uncharacterized LOC10834993523384297833850878Rat
1308170Cd180CD180 molecule23385594033870046Rat
1310139Mast4microtubule associated serine/threonine kinase family member 423389324134483600Rat
40982580LOC120101075uncharacterized LOC12010107523389787433938550Rat
41015821LOC120101076uncharacterized LOC12010107623391285733914443Rat
41232441LOC120101238small nucleolar RNA SNORA1523402219734022326Rat
40934274LOC120101078uncharacterized LOC12010107823409371134095907Rat
41056464LOC120101077uncharacterized LOC12010107723447471034477122Rat
41053152LOC120100556uncharacterized LOC12010055623460940034615966Rat
621696Srek1splicing regulatory glutamic acid and lysine rich protein 123484955234885120Rat
1562952Erbinerbb2 interacting protein23492696235028440Rat
7672686LOC102548891AKT-interacting protein-like23505758135059009Rat
41030574LOC120100694uncharacterized LOC12010069423509379335099838Rat
621518Nlnneurolysin23513363435232927Rat
727976Sgtbsmall glutamine rich tetratricopeptide repeat co-chaperone beta23523304535269527Rat
1306583Trappc13trafficking protein particle complex subunit 1323527049335302049Rat
41350418Shld3shieldin complex subunit 323529495635301865Rat
621587Trim23tripartite motif-containing 2323530240535335746Rat
1310204Ppwd1peptidylprolyl isomerase domain and WD repeat containing 123533730135360661Rat
1310461Cenpkcentromere protein K23536013235421372Rat
1307678Adamts6ADAM metallopeptidase with thrombospondin type 1 motif, 623542148335633305Rat
41113370LOC120101138U6 spliceosomal RNA23552861635528722Rat
41347556LOC120101080uncharacterized protein C11orf98 homolog23561335735613723Rat
41029337LOC12010069540S ribosomal protein S29-like23574579835764518Rat
1310697Cwc27CWC27 spliceosome associated cyclophilin23576467435975908Rat
1305356Srek1ip1SREK1-interacting protein 123597604535999630Rat
1564672Shisal2bshisa like 2B23600262236019529Rat
1309360Rgs7bpregulator of G-protein signaling 7 binding protein23613394436231505Rat
1589594LOC502504similar to CG11883-PB, isoform B23624601036326648Rat
1595064Rnf180ring finger protein 18023633028536511168Rat
40954385LOC120101342small nucleolar RNA SNORA1723644024536440364Rat
2845Htr1a5-hydroxytryptamine receptor 1A23669417436695442Rat
1594381LOC499522similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI)23692858836929161Rat
9151583LOC103691446uncharacterized LOC10369144623719043137463186Rat
1560462RGD1560462similar to ribosomal protein L10a23719203637193479Rat
7695496LOC102556361uncharacterized LOC10255636123761814037642341Rat
1311133Ipo11importin 1123816968838342929Rat
41272581Lrrc70leucine rich repeat containing 7023821350838231099Rat
1311752Dimt1DIM1 rRNA methyltransferase and ribosome maturation factor23834308638366760Rat
70974Kif2akinesin family member 2A23836799838431237Rat
1564606RGD1564606similar to 60S ribosomal protein L23a23845281438453384Rat
7517146LOC102546512uncharacterized LOC10254651223852728838537176Rat
41348725LOC120101157U6 spliceosomal RNA23858377138583877Rat
11413279LOC108349939uncharacterized LOC10834993923861681938657106Rat
41396312LOC120100697uncharacterized LOC12010069723866775238693190Rat
11449327LOC108349941uncharacterized LOC10834994123877523038811284Rat
41288964LOC120100698uncharacterized LOC12010069823886524538876526Rat
41265315LOC120100699uncharacterized LOC12010069923892561638943051Rat
7751753LOC102546727uncharacterized LOC10254672723897359938994374Rat
11452971LOC108349942uncharacterized LOC10834994223903661239069876Rat
9150057LOC103691449uncharacterized LOC10369144923913897439167216Rat
1306624Zswim6zinc finger, SWIM-type containing 623921113139378877Rat
41167126LOC120100700uncharacterized LOC12010070023939181139400380Rat
41019158LOC120100701uncharacterized LOC12010070123943749039446872Rat
41204573LOC120100702uncharacterized LOC12010070223949465539499673Rat
7567902LOC102549347uncharacterized LOC10254934723950006339528170Rat
2324600Smim15small integral membrane protein 1523952825639533416Rat
1560158Ndufaf2NADH:ubiquinone oxidoreductase complex assembly factor 223953568039647378Rat
1311570Ercc8ERCC excision repair 8, CSA ubiquitin ligase complex subunit23964739339686229Rat
41213703LOC12010055760S ribosomal protein L29-like23971531539716074Rat
1560076RGD1560076similar to 60S ribosomal protein L29 (P23)23972034939720914Rat
41036237LOC120100985egl nine homolog 1-like23974837339749980Rat
1310560Elovl7ELOVL fatty acid elongase 723978922939858579Rat
11419093LOC108350211uncharacterized LOC10835021123984997239855243Rat
1305799Depdc1bDEP domain containing 1B23989116339963779Rat
3281Pde4dphosphodiesterase 4D24001493341529190Rat
41308577LOC120101083uncharacterized LOC12010108324027851940287658Rat
40993190NEWGENE_40933816transfer RNA valine (anticodon AAC)24060367340603753Rat
2325413Mir582microRNA 58224092857140928651Rat
11487276LOC108350210uncharacterized LOC10835021024102007441032958Rat
41207854LOC120101081uncharacterized LOC12010108124106008041067591Rat
41368707LOC120101082uncharacterized LOC12010108224106763841091014Rat
41024273LOC120101084uncharacterized LOC12010108424131450641320081Rat
11451820LOC108349943uncharacterized LOC10834994324158493541590024Rat
620923Rab3cRAB3C, member RAS oncogene family24162772041843541Rat
1586621GaptGrb2-binding adaptor protein, transmembrane24192753341932120Rat
620760Plk2polo-like kinase 224196917641974945Rat
1585493LOC686105similar to solute carrier family 25, member 524210259442103565Rat
9436047LOC103691451uncharacterized LOC10369145124272675242733899Rat
1560402RGD1560402similar to Phosphoglycerate kinase 124275460542755929Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33822D2Mit29246278877727888014Ratregion
5066238PMC123630P1650279079927908642Ratregion
5064866BE108652164280642308064394Ratregion
5065780BE109854151280648348064985Ratregion
5066992AU048029126281667388166864Ratregion
39946D2Rat251227286345718634800Ratregion
1638815D2Mco49258289223828922640Ratregion
1633195D2Got39220721053378410533991Ratregion
1633560D2Mco4688721089262610893513Ratregion
43462D2Got127521092860710928882Ratregion
35901D2Rat313621098383410983959Ratregion
5050044RH13383021421114951211149726Ratregion
5502551RH12526912521122525011225375Ratregion
40786D2Rat18714621125172111251855Ratregion
5053253RH14254210421128825011288354Ratregion
5089663AU04928923721131667111316908Ratregion
5072024RH13542121121148534411485555Ratregion
5053183RH14250110821148596611486074Ratregion
5499715UniSTS:23416522921169008511690314Ratregion
36912D2Rat117421185206211852238Ratregion
42284D2Rat36820221185628411856483Ratregion
5500129UniSTS:23706221521194269711942912Ratregion
5047280RH13223718121199390511994086Ratregion
5026336RH13181619021208706112087251Ratregion
5057478AI0305669021210152612101616Ratregion
5026458RH13229218321217629912176482Ratregion
67798D2Uwm1414721265410012654247Ratregion
1629134D2Got37819421374790113748095Ratregion
42285D2Rat36924021382088313821113Ratregion
67797D2Uwm1320121384054213840758Ratregion
5031702AU04743514321397882913978972Ratregion
5507547G1064723721413209514132332Ratregion
5070474AV01117214221413315614133298Ratregion
5050218RH13392921121413315614133367Ratregion
5081929BE11877215821413443914134597Ratregion
5079748RH14118021421413569914135913Ratregion
5035661STS-Z400676321413595014136013Ratregion
5032301AI8433899621479343614793532Ratregion
66484D2Uia1727621491036214910642Ratregion
62486D2Uia522121557584015576061Ratregion
5506254G35939126721564274915644016Ratregion
5032277AI98785611721570582515705942Ratregion
5044528RH13065518721584848115848674Ratregion
5081030RH14192418021585103015851210Ratregion
5054703RH14337715721585816315858320Ratregion
36205D2Rat217321649174016491908Ratregion
5068692AU04699120021693930416939504Ratregion
40024D2Rat18917521731960617319743Ratregion
5084858AI10299919921734319017343389Ratregion
1628275D2Ulb2521221860440518604617Ratregion
5090073AU04953421522029008820290298Ratregion
5078088RH14013720822040439320404601Ratregion
5047770RH13251818022040469520404875Ratregion
5503877CRTL124622068537720685623Ratregion
5029951BE10354818522069355520693740Ratregion
5078578RH14042512422069578320695907Ratregion
5060882BE10465220122069615220696353Ratregion
5055247RH14369111922076205120762170Ratregion
5077502RH13979321822094860020948818Ratregion
1631679D10Ulb1149522114339421144889Ratregion
5065628BI30364712022119590121196021Ratregion
5055467RH14381813122121419721214328Ratregion
5071762RH13527020022121564621215846Ratregion
5041452RH12886419122121652821216719Ratregion
36089D2Rat416822146301221463190Ratregion
42559D2Rat30821622164545221645651Ratregion
5053681RH14278914522203762422037769Ratregion
5056879RH14463320422210789322108097Ratregion
5048730RH13307220822210989222110100Ratregion
5030337BF40261824222219720722197450Ratregion
5063650BE10790516422226320222263366Ratregion
5069384AU04653417122254823222548402Ratregion
41402D2Rat19116022255537922555559Ratregion
42592D2Rat37722222258926722589503Ratregion
5029091RH14348916322265441322654575Ratregion
5027465AW5586848422293331722933401Ratregion
5046414RH13173920522293336122933566Ratregion
7206416mEgCIR3792022293512522935155Ratregion
5032791RH13531218722293844822938635Ratregion
5029143RH14368017722293845722938634Ratregion
5073356RH13738916222303875523038917Ratregion
5050606RH13415322022311373523113965Ratregion
5030333BE10591718622311470823114894Ratregion
5071968RH13538920022311659923116799Ratregion
5082001BG37254013822311880323118941Ratregion
5081152RH14199518822317416623174354Ratregion
5056263RH14427714522323805423238199Ratregion
61291D2Uwm1513922331929623319447Ratregion
60316D2Got220522336480123365006Ratregion
5506054UniSTS:49824518622358223623582422Ratregion
5031039BE12139814922358909823589247Ratregion
5050576RH13413619222361050423610696Ratregion
5051533AW5550948322361061423610697Ratregion
5032669RH13485918622361244423612630Ratregion
5083783AI41290013022361336123613491Ratregion
5079784RH14120118122366709823667279Ratregion
5040558RH12835219522367447923674674Ratregion
5080168RH14142420522375755623757761Ratregion
5064518BI30223615022380558023805730Ratregion
5074176RH13786514222390063523900777Ratregion
5046660RH13188115022398326723983944Ratregion
5502760THBS4022399420923994558Ratregion
5505901UniSTS:4960186322402114124021204Ratregion
5046542RH13181318222406947924069661Ratregion
5047132RH13215118622407943124079617Ratregion
5081316RH14209018822409950524099693Ratregion
5051158RH13447319022427975024279940Ratregion
5045230RH13105918022438043124380611Ratregion
5066810AU04813713722453494424535079Ratregion
42561D2Rat30921722459022824590426Ratregion
1639891D2Wox5122460197024602285Ratregion
5082247BE11901519022460304624603236Ratregion
5078602RH14043912522466613724666262Ratregion
5082633BE11988616822469530324695471Ratregion
5082007BF40904122122477094424771165Ratregion
5026748RH13338119722485998024860177Ratregion
5032913RH13694718122489476624894947Ratregion
39834D2Rat25218922490385324904033Ratregion
5043496RH13005818022498731324987493Ratregion
5039114RH12752019222500163825001830Ratregion
5090625AU04986515622501881125018969Ratregion
5066124BF41348520722504182725042041Ratregion
5506505D16S506135322507075225072105Ratregion
5029271RH14416316922511119425111363Ratregion
5044768RH13079318022516247025162650Ratregion
5031924AU04668714022529468925294829Ratregion
38576D2Rat18224322541342325413652Ratregion
5039950RH12800220022542757125427771Ratregion
5047586RH13241319222543412425434316Ratregion
5032887RH13685121622543565925435875Ratregion
5506210Mbd333822550152725501865Ratregion
5050086RH13385421522550165525501870Ratregion
5038692RH12683922022550166225501882Ratregion
36546D2Rat515022555172725551874Ratregion
5080110RH14138819722559910225599299Ratregion
5028555C7839515122580038425800535Ratregion
5042952RH12974322022580272125802941Ratregion
5028157D13Mit25811322610653826106651Ratregion
5071678RH13522120522612003126120236Ratregion
5085286AI59920615022625424126254391Ratregion
43474D2Got319622637731126377507Ratregion
39558D2Rat25316422655981726560006Ratregion
5073254RH13732918022659990126600081Ratregion
5046624RH13186121222661945926619671Ratregion
5082429BE11937216822664491926645087Ratregion
43477D2Got417022668513726685307Ratregion
1632280D2Wox5619822669245826692656Ratregion
5048338RH13284619222669264626692838Ratregion
43475D2Got18014922672849926728648Ratregion
5033399RH13869414022675219026752330Ratregion
5059876BF40005912622686750526867631Ratregion
5047024RH13209020122686850926868710Ratregion
5079394RH14097018522686968226869867Ratregion
5070189RH9452417922687025726870436Ratregion
5501229PMC156147P911022687191526872025Ratregion
5072504RH13688719922689492926895128Ratregion
5085960AI01400616022690554826905708Ratregion
38976D2Rat12421522691781726918153Ratregion
38976D2Rat12421522691794826918153Ratregion
7206266F2rl212022697596926976089Ratregion
5045348RH13112620022697752926977729Ratregion
36145D2Rat7317022699957126999741Ratregion
5074934RH13830317522708608027086255Ratregion
10966D2Uwm3420022720502327205223Ratregion
5082099BF40950112922723159427231723Ratregion
5086080AI17931415022729849227298648Ratregion
5064756BE10845516222742344227423604Ratregion
5076958RH13947720622742985827430064Ratregion
1641309D2Ulb2214822763993727640083Ratregion
5065168BE12106115522774424627744401Ratregion
5071370RH13504318022774854527748725Ratregion
67799D2Uwm1613022782411727824231Ratregion
5081999BG37253615122782516927825320Ratregion
5057810BE10159415122783949527839646Ratregion
5029891BE09746415522792428827924443Ratregion
39728D2Rat19220622794025927940466Ratregion
35699D2Rat614222796038727960546Ratregion
5056811RH14459416522796193027962095Ratregion
5044278RH13051119322798684527987038Ratregion
5042032RH12919918022799795327998133Ratregion
5505271Hmgcr022799872027999556Ratregion
1633622D2Ulb2313022817212128172253Ratregion
36171D2Rat715022828423028284380Ratregion
5081747BE11801116622840440628404572Ratregion
5500133UniSTS:23708520122843871328438914Ratregion
5079196RH14079113922844102828441167Ratregion
5087161AI22869819722844162528441823Ratregion
5500615RH136262022844753228447820Ratregion
5063892BE12017915222848341628483568Ratregion
5078654RH14047110622848522528485331Ratregion
5077190RH13961418322848522528485408Ratregion
5039488RH12773420622848783328488039Ratregion
5057886BE10164516222885280328852965Ratregion
5049642RH13359818122886972328869904Ratregion
5066714AU04819419622906793729068133Ratregion
5066714AU04819419622906796229068133Ratregion
5035504ATP5B13722913603929136176Ratregion
5039890RH12796621922913752529137741Ratregion
5059548BE09728015922928098129281140Ratregion
5034796AI23233510222929506829295170Ratregion
5029265RH14413916422930553829305702Ratregion
43479D2Got519422942916129429355Ratregion
5061648BF39698512922959500029595129Ratregion
5078048RH14011221822959638529596603Ratregion
5086357AA89158519022962325629623447Ratregion
5086357AA89158519022962325629623447Ratregion
5502873Foxd185122970400729704858Ratregion
5032413AI38563214022970441529704555Ratregion
5066068BE11670415622976927429769430Ratregion
43480D2Got722322986524029865463Ratregion
40242D2Rat19417522997159329971768Ratregion
5048642RH13302120222998832329988525Ratregion
5042478RH12945818023007915630079336Ratregion
5066452AU04834822423013468830136229Ratregion
5078006RH14008720823016815130168359Ratregion
5075872RH13884613623017687030177006Ratregion
5025116AU02174920723020777830207985Ratregion
5500135UniSTS:23709011523020778930207904Ratregion
5064250BE12088315423020811030208264Ratregion
5063122BE1137769223021162330211715Ratregion
5073862RH13768220723021255930212766Ratregion
35427D2Rat812523051368330513808Ratregion
5064080BE11400916023057115330571313Ratregion
5087270AW53220916523058216030582325Ratregion
5047982RH13264020123071230330712504Ratregion
5076104RH13898121823078792530788143Ratregion
5050818RH13427619323080320030803393Ratregion
5043568RH13010020423080830030808504Ratregion
5028557X5139610423082064930820753Ratregion
5088011UniSTS:14392820523082682230827027Ratregion
5073458RH13744821023089612930896339Ratregion
5036416Mtap1b18023091001830910198Ratregion
39280D2Rat15410323091721630917319Ratregion
5500318GDB:187013120023094744130948641Ratregion
5063480BF39890718523098977630989961Ratregion
5080724RH14174518623110601131106197Ratregion
5067132AU04794313723128425731284394Ratregion
5045284RH13108918823130506131305249Ratregion
5090415AU04973722723135033831350565Ratregion
5070792RH13470818923137853431378723Ratregion
5072138RH13667315523138037531380530Ratregion
1629938D2Got3689823138512731385227Ratregion
5059908BF3947799123144897931449070Ratregion
5055887RH14406018823147748931477677Ratregion
5071284RH13499420223148178231481984Ratregion
5066072BE11673415823148915631489315Ratregion
37880D2Rat9422023152340931523629Ratregion
5087781D13Die2516723152654431526711Ratregion
5048628RH13301321123155589831556109Ratregion
5087781D13Die2516723157535631575523Ratregion
5085840BF38818520323161236231612565Ratregion
5031017BE12102417023161387231614042Ratregion
41016D2Rat19310123168580531685914Ratregion
38414D2Rat9012123173567231735799Ratregion
60344D2Got822323173612231736338Ratregion
5047436RH132327023174088931741072Ratregion
5057722BE10140616023174217031742330Ratregion
5069262AU04661318123175084231751014Ratregion
5500143UniSTS:23709610723177018231770289Ratregion
5053781RH14284711423179489331795007Ratregion
5041678RH12899519923179792631798125Ratregion
5072472RH13686915123180604931806200Ratregion
5059088AI07131720123183383931834040Ratregion
5039624RH12781218623187207431872260Ratregion
5064594BE10816919023189471131894900Ratregion
5071752RH13526419623189677631896972Ratregion
5049994RH13380120023191221231912412Ratregion
1638933D2Ulb3310023191340131913501Ratregion
5041854RH12909715623191345831913614Ratregion
5076504RH13921414423191347931913623Ratregion
5506183UniSTS:49873717523191404631914401Ratregion
5499575D4Ertd639e22223191410731914953Ratregion
5087724Ccnb1-rs113823191412731914445Ratregion
5039420RH12769618123194610131946282Ratregion
43481D2Wox3220623199099831991192Ratregion
5065668BF41272519523208019532080390Ratregion
43484D2Got617323223089632231087Ratregion
67800D2Uwm1733023237377032374088Ratregion
5058612BE10219119223264290532643097Ratregion
502794138.MMHAP15FLE5.seq18123264376532643946Ratregion
5088285AU04847817223283995732840121Ratregion
43485D2Got1014423284403732844191Ratregion
5055013RH14355511023287934932879459Ratregion
5039920RH12798421923288214932882368Ratregion
5036450Pik3r118423288277432882958Ratregion
5027467U504138423288278132882865Ratregion
5027805RH9481217123288509032885351Ratregion
5074552RH13808315323293287732933030Ratregion
5074718RH13817812023293648632936606Ratregion
5034664BF39085716723293803632938203Ratregion
66385D2Mco4320023310317833103392Ratregion
43483D2Got19511423311776833117872Ratregion
1639378D2Ulb428823314036733140655Ratregion
1632335D2Got37110723360873033608837Ratregion
5090643AU04987518623368898433689148Ratregion
5090745AU04993813523374020033740321Ratregion
36896D2Rat913023374476633744889Ratregion
5506853G4646529623385878333859079Ratregion
5073352RH13738615423386860333868757Ratregion
5077762RH13994421723389325933893476Ratregion
5035270AI17859011823395553233955646Ratregion
60282D2Got1129223408434234084616Ratregion
37520D2Rat11612023409103934091161Ratregion
5028991RH14309820223409579734096004Ratregion
5058086BF38659818623412671734126903Ratregion
5053517RH14269410123420103334201134Ratregion
41380D2Rat19515523420301234203179Ratregion
5085487BE09695915123425007434250224Ratregion
5053475RH14267010023432062534320725Ratregion
5029319RH14434621323447713334477346Ratregion
60288D2Got1329223457022334570514Ratregion
5084812AI1793779123465265534652747Ratregion
66732D2Mco3720023476305334763258Ratregion
66695D2Mco2522423476309534763315Ratregion
43486D2Got1210823476314034763246Ratregion
1631604D2Ulb520023477231034772510Ratregion
5071134RH13490621823484971234849933Ratregion
5039868RH12795319123485174134851935Ratregion
5053409RH14263212723487705834877185Ratregion
5046516RH13179819323492671434926907Ratregion
5501518G0732917123492697034927141Ratregion
5025516RH12862220123492762134927822Ratregion
36532D2Rat1112723493800734938128Ratregion
5072736RH13702318523513372935133914Ratregion
34425D2Mgh113423513484135134970Ratregion
5085842BM38290715223513501335135165Ratregion
5048514RH132947023523168435232738Ratregion
5059666BE09757621723525574535255962Ratregion
5079958RH14130118323526947535269658Ratregion
5041236RH12874118023527056635270746Ratregion
5074396RH13799313323529500635295139Ratregion
5501844MARC_15693-15694:1017691889:161923533042335331042Ratregion
5042878RH129699023533495435335135Ratregion
5055853RH14404018323533606735336250Ratregion
5054213RH14309529523550926435509559Ratregion
5063368BI30171219323556218535562378Ratregion
5085792BM39231216523562236335622528Ratregion
5053373RH14261113423563098235631116Ratregion
5058146BF38669819923573309335733292Ratregion
5046754RH13193521123576476835764979Ratregion
5056521RH14442611523579690435797019Ratregion
1634602D2Got37411723589967635899811Ratregion
5074460RH13802912023597826335978383Ratregion
5043454RH13003518823599936335999551Ratregion
5064506BI29686519823600124636001444Ratregion
5041620RH12896215523600264736002802Ratregion
36428D2Rat1018623602318436023379Ratregion
5048152RH13273821523607975536079970Ratregion
5081124RH14197820523613405936134264Ratregion
5083171BF39091816123613634036136501Ratregion
5079906RH14127118323613752236137705Ratregion
43473D2Got1511223617934336179445Ratregion
5059496BE09707620723633029636330503Ratregion
66656D2Mco1517423651947736519658Ratregion
34514D2Mit3116523669541436695579Ratregion
5083147BF39087815623669596636696122Ratregion
5070055RH9444319923669616536696364Ratregion
44552D9Wox2113623740565337405710Ratregion
43463D2Got1422323750492237505150Ratregion
43466D2Got2328323751261037512902Ratregion
43468D2Got1918323785178437851955Ratregion
43465D2Got2018523808168538081874Ratregion
35250D2Rat1313623808169038081826Ratregion
43464D2Got2119823808329338083501Ratregion
5501620REN122C19023816007038161096Ratregion
5084194AA94506720623821623438216442Ratregion
5053151RH14248315323830002238300176Ratregion
5044580RH13068521223836264538362857Ratregion
5077160RH13959619623836796838368164Ratregion
5047272RH13223219223836826038368452Ratregion
5078410RH14032624823836941738369665Ratregion
42104D2Arb124023852858938528872Ratregion
5042886RH12970318323854993238550115Ratregion
5049530RH133534023880415938804340Ratregion
43472D2Got1613723903305739033194Ratregion
5044432RH13059921823921125139211469Ratregion
5056307RH14430320823925285539253063Ratregion
43471D2Got2223923927635739276596Ratregion
5062140BF39749615223928489939285051Ratregion
5084652AI00817122023931989539320115Ratregion
5066686AU04821117523934991639350091Ratregion
5059806BI28544116223935671739356879Ratregion
5035318BM38701619723936273739362934Ratregion
43470D2Got1819223936291339363105Ratregion
35941D2Rat1215423937437639374529Ratregion
5506915G4794025523940154439401799Ratregion
42564D2Rat31210823946200539462111Ratregion
61289D2Mco1920023946319939463386Ratregion
5082203BI27412420323950042339500626Ratregion
5056777RH14457416423952743739527601Ratregion
5083881AI01065111623953379139533907Ratregion
5060530BE11029717723968365739683834Ratregion
5025646RH129115023968424639684430Ratregion
5049036RH13324921223968587039686082Ratregion
5072050RH13543620823969700839697216Ratregion
5041584RH12894122023978388739784107Ratregion
5068096AU04735019323980880939809001Ratregion
5068376AU04718414823981968639819829Ratregion
5062914AA95555318623985838439858570Ratregion
43469D2Got1717323988474239884915Ratregion
5049242RH13336719423996345039963644Ratregion
41158D2Rat19724824006783540068095Ratregion
34397D2Mgh213324006794440068089Ratregion
38770D2Rat18421924034010640340327Ratregion
38770D2Rat18421924034010640340593Ratregion
38770D2Rat18421924034027540340327Ratregion
5069614AU04638219324062937740629570Ratregion
5062674BF40377422024079801740798237Ratregion
66701D2Mco2720124098660740986991Ratregion
66701D2Mco2720124098677640986991Ratregion
35292D2Rat1817624112578941125954Ratregion
505166913.MMHAP86FRE7.seq18524114118641141371Ratregion
7206386fb98c02.x1109224114448941145581Ratregion
60750D2Rat31711224115006841150174Ratregion
5075936RH13888315224123016741230319Ratregion
41538D2Rat19913324124396341244106Ratregion
5086498BF40159421724133146541331682Ratregion
5087080BQ19287518824135685041357038Ratregion
60319D2Got2511824143647241436590Ratregion
5036889AU04952519624144973041449926Ratregion
5085258AW53275016724152864441528811Ratregion
43467D2Got2414224157675441576896Ratregion
5079832RH14122918024162055541620720Ratregion
5073968RH13774313724162146041621597Ratregion
5083197BF39096617924162397741624156Ratregion
5505654UniSTS:488481155824192783441929393Ratregion
5056031RH14414313824192808041928218Ratregion
5027089IB167116224197466241974824Ratregion
38476D2Rat14211124259119142591300Ratregion
38064D2Rat15322024278647942786683Ratregion
37018D2Rat1414224280460742804738Ratregion
Position Markers

Flank 1: (D2Mit29)
Rat AssemblyChrPosition (strand)Source
mRatBN7.227,887,772 - 7,888,014 (+)MAPPER
Rnor_6.025,417,336 - 5,417,577NCBI
Rnor_5.025,396,621 - 5,396,862UniSTS
RGSC_v3.425,601,528 - 5,601,770RGD
RGSC_v3.425,601,529 - 5,601,770UniSTS
RGSC_v3.125,627,976 - 5,628,373RGD
Celera24,338,310 - 4,338,555UniSTS
Cytogenetic Map2q11UniSTS
Peak: (D2Rat4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2221,463,012 - 21,463,190 (+)MAPPER
Rnor_6.0219,190,917 - 19,191,094NCBI
Rnor_5.0219,065,913 - 19,066,090UniSTS
RGSC_v3.4220,424,672 - 20,424,849RGD
RGSC_v3.4220,424,673 - 20,424,850UniSTS
RGSC_v3.1220,345,041 - 20,345,218RGD
Celera217,588,583 - 17,588,760UniSTS
SHRSP x BN Map24.7599UniSTS
SHRSP x BN Map24.7599RGD
Flank 2: (D2Rat14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2242,804,607 - 42,804,738 (+)MAPPER
Rnor_6.0242,776,916 - 42,777,046NCBI
Rnor_5.0261,825,950 - 61,826,080UniSTS
Celera238,596,670 - 38,596,808UniSTS
RH 3.4 Map2197.8UniSTS
RH 3.4 Map2197.8RGD
RH 2.0 Map2240.5RGD
SHRSP x BN Map2-1.1RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777212654247Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
731179Mamtr3Mammary tumor resistance QTL 30.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)23237377043665178Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
12879863Bp402Blood pressure QTL 4020.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24112578956532139Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type backcross  
qtl_general allele responsible: cryptic WKY allele increases tumor number 1599317
qtl_general inducing agent and dosage: single dosage of DMBA, 65mg/kg 1599317
qtl_general number of animals used: 187 1599317
qtl_general gender: 53-58 days old virgin females 1599317
qtl_general spans 140 cM 1599317