LOC100912266 (uncharacterized LOC100912266) - Rat Genome Database

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Gene: LOC100912266 (uncharacterized LOC100912266) Rattus norvegicus
Analyze
Symbol: LOC100912266
Name: uncharacterized LOC100912266
RGD ID: 6488109
Description:
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: LRRG00123; LRRGT00103
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,288,798 - 28,297,872 (+)NCBIGRCr8
mRatBN7.2226,554,062 - 26,563,136 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,554,062 - 26,563,137 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_WKY_Bbb_1.0226,507,930 - 26,517,291 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0225,007,218 - 25,016,292 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl225,007,218 - 25,016,293 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0244,165,763 - 44,174,838 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera222,619,885 - 22,628,959 (+)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC100912266
146 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat

Markers in Region
D2Rat253  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2226,559,817 - 26,560,006 (+)MAPPERmRatBN7.2
Rnor_6.0225,012,974 - 25,013,162NCBIRnor6.0
Rnor_5.0244,171,519 - 44,171,707UniSTSRnor5.0
RGSC_v3.4225,663,274 - 25,663,463RGDRGSC3.4
RGSC_v3.4225,663,275 - 25,663,463UniSTSRGSC3.4
RGSC_v3.1225,583,643 - 25,583,832RGD
Celera222,625,641 - 22,625,829UniSTS
FHH x ACI Map212.2699RGD
FHH x ACI Map212.2699UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system renal system reproductive system
High
Medium
Low 2
Below cutoff 1 1 10

Sequence


RefSeq Acc Id: ENSRNOT00000078413   ⟹   ENSRNOP00000070141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl226,554,062 - 26,563,137 (+)Ensembl
Rnor_6.0 Ensembl225,007,218 - 25,016,293 (+)Ensembl
RefSeq Acc Id: NR_131102
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8228,288,798 - 28,297,872 (+)NCBI
mRatBN7.2226,554,062 - 26,563,136 (+)NCBI
Rnor_6.0225,007,218 - 25,016,292 (+)NCBI
Celera222,619,885 - 22,628,959 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAQ91059 (Get FASTA)   NCBI Sequence Viewer  
  AAS66214 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070141.1
RefSeq Acc Id: ENSRNOP00000070141   ⟸   ENSRNOT00000078413

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6QI85-F1-model_v2 AlphaFold Q6QI85 1-92 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54817 BioCyc
Ensembl Genes ENSRNOG00000059441 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078413 ENTREZGENE
  ENSRNOT00000078413.2 UniProtKB/TrEMBL
NCBI Gene LOC100912266 ENTREZGENE
PhenoGen LOC100912266 PhenoGen
RatGTEx ENSRNOG00000059441 RatGTEx
RNAcentral URS00008121DD RNACentral
UniProt Q6QI85_RAT UniProtKB/TrEMBL
UniProt Secondary A6I4Y5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100912266  uncharacterized LOC100912266      Symbol and Name status set to provisional 70820 PROVISIONAL