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Gene: Lhfpl2 (LHFPL tetraspan subfamily member 2) Rattus norvegicus

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Symbol:

Lhfpl2

Name:

LHFPL tetraspan subfamily member 2

RGD ID:

1309869

Description:

Predicted to be involved in development of primary female sexual characteristics; development of primary male sexual characteristics; and positive regulation of fertilization. Predicted to be active in membrane. Orthologous to human LHFPL2 (LHFPL tetraspan subfamily member 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; all-trans-retinoic acid.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

lipoma HMGIC fusion partner-like 2; lipoma HMGIC fusion partner-like 2 protein; LOC294643

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LHFPL2 (LHFPL tetraspan subfamily member 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Lhfpl2 (lipoma HMGIC fusion partner-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lhfpl2 (LHFPL tetraspan subfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LHFPL2 (LHFPL tetraspan subfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LHFPL2 (LHFPL tetraspan subfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lhfpl2 (LHFPL tetraspan subfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LHFPL2 (LHFPL tetraspan subfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LHFPL2 (LHFPL tetraspan subfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lhfpl2 (LHFPL tetraspan subfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MRPL40 (mitochondrial ribosomal protein L40)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	LHFPL2 (LHFPL tetraspan subfamily member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lhfpl2 (lipoma HMGIC fusion partner-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lhfpl2b (LHFPL tetraspan subfamily member 2b)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lhfpl2a (LHFPL tetraspan subfamily member 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3770	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lhfpl2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	27,016,404 - 27,169,830 (+)	NCBI		GRCr8
mRatBN7.2	2	25,281,771 - 25,428,128 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	25,281,901 - 25,427,950 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	32,373,260 - 32,456,118 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	30,473,524 - 30,556,383 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	25,298,201 - 25,380,341 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	23,705,491 - 23,852,021 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	23,770,721 - 23,852,021 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	42,878,147 - 43,023,911 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	24,407,387 - 24,489,407 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	24,384,047 - 24,406,455 (+)	NCBI
Celera	2	21,418,069 - 21,501,439 (+)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Hermansky-Pudlak syndrome 2 (ISO)

IgA glomerulonephritis (ISO)

mucopolysaccharidosis VI (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-bromohexadecanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

allopurinol (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

dimethylarsinic acid (ISO)

ethanol (ISO)

fipronil (EXP)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

indometacin (ISO)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

methimazole (EXP)

methoxychlor (EXP)

methylarsonic acid (ISO)

N-Nitrosopyrrolidine (ISO)

nevirapine (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

phenobarbital (ISO)

piroxicam (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tremolite asbestos (ISO)

trichloroethene (EXP)

triclosan (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

troglitazone (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

development of primary female sexual characteristics (ISO)

development of primary male sexual characteristics (ISO)

positive regulation of fertilization (ISO)

Cellular Component

membrane (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:26964900

Genomics

Comparative Map Data

Lhfpl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	27,016,404 - 27,169,830 (+)	NCBI		GRCr8
mRatBN7.2	2	25,281,771 - 25,428,128 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	25,281,901 - 25,427,950 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	32,373,260 - 32,456,118 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	30,473,524 - 30,556,383 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	25,298,201 - 25,380,341 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	23,705,491 - 23,852,021 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	23,770,721 - 23,852,021 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	42,878,147 - 43,023,911 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	24,407,387 - 24,489,407 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	24,384,047 - 24,406,455 (+)	NCBI
Celera	2	21,418,069 - 21,501,439 (+)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

LHFPL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	78,485,230 - 78,648,772 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	78,485,215 - 78,770,021 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	77,781,053 - 77,944,595 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	77,816,794 - 77,980,404 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	77,816,809 - 77,841,867	NCBI
Celera	5	73,674,222 - 73,837,829 (-)	NCBI		Celera
Cytogenetic Map	5	q14.1	NCBI
HuRef	5	72,987,888 - 73,135,012 (-)	NCBI		HuRef
CHM1_1	5	77,214,339 - 77,377,632 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	78,966,706 - 79,251,841 (-)	NCBI		T2T-CHM13v2.0

Lhfpl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	94,193,659 - 94,331,918 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	94,194,304 - 94,331,917 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	94,057,152 - 94,195,410 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	94,057,796 - 94,195,409 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	94,827,751 - 94,965,364 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	95,158,549 - 95,296,163 (+)	NCBI		MGSCv36	mm8
Celera	13	97,679,541 - 97,817,771 (+)	NCBI		Celera
Cytogenetic Map	13	C3	NCBI
cM Map	13	49.03	NCBI

Lhfpl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	22,504,107 - 22,557,970 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	22,398,503 - 22,556,667 (+)	NCBI	ChiLan1.0	ChiLan1.0

LHFPL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	36,655,122 - 36,819,286 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	34,809,565 - 34,972,913 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	36,663,171 - 36,825,272 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	37,151,995 - 37,314,043 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	37,289,046 - 37,314,043 (+)	Ensembl	panpan1.1		panPan2

LHFPL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	28,255,389 - 28,279,510 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	29,367,033 - 29,520,677 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	28,049,631 - 28,203,008 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	3	27,985,849 - 28,139,437 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	27,964,071 - 28,117,601 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	28,291,124 - 28,444,925 (+)	NCBI		UU_Cfam_GSD_1.0

Lhfpl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	184,321,166 - 184,460,783 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936549	6,397,810 - 6,418,937 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936549	6,398,190 - 6,537,832 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LHFPL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	87,322,934 - 87,349,878 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	87,321,119 - 87,498,686 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	88,879,254 - 88,970,752 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LHFPL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	72,738,214 - 72,769,384 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	72,737,678 - 72,835,153 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	21,585,518 - 21,745,975 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lhfpl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624869	2,991,062 - 3,071,841 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624869	2,991,062 - 3,146,048 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Lhfpl2
1380 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	442
Count of miRNA genes:	236
Interacting mature miRNAs:	310
Transcripts:	ENSRNOT00000014795
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	11591100	56591100	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	22384627	67384627	Rat
631682	Bp115	Blood pressure QTL 115	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	1	37410502	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	41244106	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	20304672	65304672	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
738012	Anxrr3	Anxiety related response QTL 3	3.8		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	2	9023519	54023519	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
10402051	Gdil2	Gastrointestinal dilation QTL 2			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	24903853	74786777	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	7887772	42804738	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	5873687	102844969	Rat
2300168	Bmd47	Bone mineral density QTL 47	6.6	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	2	20662448	65662448	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	11852062	49003364	Rat
1357990	Ael1	Aortic elastin QTL 1	3.1	0.00091	aorta elastin amount (VT:0003905)	aortic elastin	2	19076825	64076825	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	16491740	61491740	Rat

Markers in Region

D2Rat182

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	27,148,328 - 27,148,557 (+)	Marker Load Pipeline
mRatBN7.2	2	25,413,423 - 25,413,652 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	23,837,491 - 23,837,719	NCBI	Rnor6.0
Rnor_5.0	2	43,009,380 - 43,009,608	UniSTS	Rnor5.0
RGSC_v3.4	2	24,474,447 - 24,474,676	RGD	RGSC3.4
RGSC_v3.4	2	24,474,448 - 24,474,676	UniSTS	RGSC3.4
RGSC_v3.1	2	24,394,817 - 24,395,045	RGD
Celera	2	21,486,419 - 21,486,647	UniSTS
RH 3.4 Map	2	13.3	RGD
RH 3.4 Map	2	13.3	UniSTS
RH 2.0 Map	2	76.4	RGD
SHRSP x BN Map	2	6.9998	RGD
FHH x ACI Map	2	11.3699	RGD
Cytogenetic Map	2	q12	UniSTS

RH128002

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	25,427,571 - 25,427,771 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	23,851,639 - 23,851,838	NCBI	Rnor6.0
Rnor_5.0	2	43,023,528 - 43,023,727	UniSTS	Rnor5.0
RGSC_v3.4	2	24,489,025 - 24,489,224	UniSTS	RGSC3.4
Celera	2	21,501,057 - 21,501,256	UniSTS
Cytogenetic Map	2	q12	UniSTS

Expression

RNA-SEQ Expression

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Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014795 ⟹ ENSRNOP00000014795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	25,281,901 - 25,427,950 (+)	Ensembl
Rnor_6.0 Ensembl	2	23,770,721 - 23,852,021 (+)	Ensembl

RefSeq Acc Id:

NM_001106402 ⟹ NP_001099872

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	27,081,085 - 27,162,859 (+)	NCBI
mRatBN7.2	2	25,346,171 - 25,427,954 (+)	NCBI
Rnor_6.0	2	23,770,708 - 23,852,021 (+)	NCBI
Rnor_5.0	2	42,878,147 - 43,023,911 (+)	NCBI
RGSC_v3.4	2	24,407,387 - 24,489,407 (+)	RGD
Celera	2	21,418,069 - 21,501,439 (+)	RGD

Sequence:

show sequence

GTGGTGTTTTTCTAAAGTTGTTCACTGAGGCTTCTCAGCATTGCTGCCAAGATAAACAGGTGAG
GCTGCTGGCCGCTGGGACTCAGCACTCCGTATGAATGCCGTCAGCCCGGGATCCAGACCTCACT
GCTTCTGCTGCCTCGGACGGGACTGAGCGACCCTCGCCGAGACTTCCTTCTCGGACTTCCTCGC
CACTCACAGCTGTCTTTCTGGATTGACACCGTGGACTTCCAGCCTCGCTTTCCCACCGTGAACA
TCAATATGTGTCATGTCATTGTCACCTGCCGCTCGATGCTCTGGACCCTCCTGAGTATCGTGGT
GGCCTTTGCTGAACTCGTTGCCTTCATGAGCGCCGACTGGCTCATCGGGAAAGCCAAGACCCGC
AGCGGCGACGAGCAGGCAGGCATGGACTCGGAGCCCCACTACCTGGGCATCCTCTGCCTCCGCA
CCCCTGCCATGCAGCAAGTCCCTCGGGACACACTGTGCGGGACCTATGCCAAGAGCTTTGGGGA
GATAGCCAGCGGCTTCTGGCAGGCTACCGCTATTTTCCTGGCCATGGGGATCTTCATTCTCTGC
GTAGTGGCTTTGGTGTCCGTCTTCACCATGTGCGTGCAAAGCATCATGAGGAAAAGCATTTTCA
ACGTCTGCGGGCTCCTGCAGGGAATCGCAGGTCTGTTCCTTATCCTCGGCCTGGTCCTCTACCC
TGCAGGCTGGGGCTGCCAGAAAGCCATCGACTGTGGACGATATGCATCCCCCTACAAACCTGGA
GACTGTTCCTTGGGCTGGGCCTTTTACACTGCCACCGGGGGCACAGTCCTCACCTTTATCTGTG
CTGTCTTCTCCGCACAAGCAGAAATTGCGACCTCCAGTGACAAAGTCCAGGAAGAAATTGAAGA
GGGGAAAAACCTCATTTGCCTCCTTTAGTCTGGAAGACCTCACTGCCACCGTTACCTTTCCTTT
ATGGCCTTGTGACACAGTCTTCATCATTCGAATCAAGTGAAGAACCAGCCTTGACCTACCGGAG
CCATACTCCACAGCTCCGGGCCTCCGTGGGACCAGTGAGCGGTACCACCCACCAAGTAGAGCTC
TTGGACATACGAGCTGGCAGTGCTAATGAGACCAGACAAGGACATGGTATGGTCCCTGTGGAGT
CCTGTGGGAGACTCCATCTCCCTGGGGCTCAATGAAGGATAGTGATCTGACTCACCAAGGCAGG
CAGCAACCTCTCTGTCCGCAGATGAGAGGATACCCAGCCTCAGGGGAGTTTGAGGCAGGCTTTT
GGCCCACAGCTATGTGTTTACGAGCATCTCAGAATGGCGGGTGGAGGTGGGGACCTTGGTTTTC
TTCCTATTTCTTTCATGTTGTCTCACTTGAGGACTGAAAGGAAGACAGCAGGCTTACGTGACAG
GTTAAATGCTGAAGGTGACAGCAAGATGCCAGGCTTTGCTTAACTGCACAAAGGCCTTAACAGG
GACAGAGCAGAACCCCACTGTGGACCTTCTCCAGTCTGAGTTCCAGGGTCAGAGGCATCAAGTG
GAACTCTCCTCAGGATTTGAGTAAAGAAAGACAATCAGAATGAAAGTACAAACCCCAGGCAGTA
AGGCAGACACCTCCTGCTTCCTGCAGTCAGCCTAGTGCCTGTGGTAGCCCTGTCTCTTCTGATA
GTTTTCGCCTAGGGTTGGGGTTGTGCTTGGCTGCCCAGGGAAACCTCAGTGTTCCTTGCTTCCA
AGGATTAGAGCCTCCAGACCAGCTGTGGTTCGTGCAGATGTACGCAGGGAGGGGTTGCCAGAAC
CTCTGCCTTTGCAGAGTGAGCTTTTCTGTTTGGTGACTTAGCTTTCCAATCCCACTGGCATTAT
CTGAAGAGAAAGCAGGAGCTAGCCCTGGAAGCTGTCTCTAGCTTCTGGTGTGGATCCGCAGAGC
AGGCTGGATGACACTGGCTCACTGCCCTGCTGTATCCAGAATCCCATCGGCAGGTTAGCGTGAA
AGCAGGGGCCGGGCCAAACTCATTGTGCCTGCCTACGCAGGTCACAGAACCCCCAAATGCCTAC
TAAAGAGGACTCAGGGCTTTTAACCCAGTTTCCATAATTACCCCTTTGACCAAAGCAGCCAGAA
AGCCCAGTCTGGCATCATATGAACCTTGGAGACACAGAGACCCTTCATAGGGGTGCAAGTGGAG
TGGACCTGTTTGGTTTTAGAGATGGCAGGTTGAGGCTTTTGTCTTTGAGTTAAGTAGTGAAACC
TTCTGCCGCCGGGCATTTGCTTACCAGGTATACAGCCTTGCCCCGGTGCAGCACTGTGTCAGTT
TAGAGTCTGCCTTGGTCCAGACAACTCCCTTATCTATAGATGGGCTAGGCCCCCAGGGGTTTAA
CTGTAGGATATTTACCCTTTGGCCTATATCAAACCGTCTTATCTCTCATGCAGATGAAAGTTAT
GGAAGGGTACTGAATCAGATCTTAAGTTCAGTTTTGAACCAGTATTCAAAATAAGCTAGGTAGA
CACCCCGTGGCTTCTTTGAAAGAGAAAGGGGAGGCACCCTAAGCAGCCCTAGGAATGCTCAGGA
AACCGGAACAGATCACTAAGGACACATGCCACTGAGCATATGGAGAAAGCGCTTCACTGGGTAT
TGATGACGTTGTCCTATGCAATCCTTGAAGCGCAGTAACTGTGTTTCCAACCCGGGCAGTACTT
TGCACGAAACACAGTTTTGTTCACTAGGAAAACTGTGACAAAACCACTTCATTTTCCTTGAATT
TACCAGATTAACTTTTCCATCTTTATGACCTTAGCCCCTTCCTCACAGACCAATCCTAGTCCAC
AGGTCCTGTGTGCATGCCCAGCCCCTGCTCTTTGGGGTCAGAGGGCAGTGGACTCCTAGCAACC
TGGTAACAGTCACGAGTGAAGTCATGACCTCTCTGCCACACTGTTACTCCACTGTTTCTCATTA
ATTTAAACGTTAGGGAAGACAGCCCCACCACAGAAGAGCACAATGAAAACTGCTACATGCTGAC
TTAATGGAACTAGATTGCATTCTATAGCAGAGAGACCTTCACACCAATGCACAGACCTTTGCAG
GAAATGAAGGACCATCTACAACTGTACTAGTACAGAATGGGACTCGGCTCCTGGCTCTTTAAAA
CCACTTGCTGGCCGATACCCGGTTCTCGGAGGATGGGACCATTGCTACTACCAGAAACGTCTTC
TCTTGCCTGCGTTTGTGCTGAGCTTCTCATTGAACTCTAAAGCAGAAACACTTGGGAGTCTGTG
GCTTCTTTAAACCTGTGTGGTAATTCAACATTGCATTTGTAACTGTGGAAGGGTCCTTGAAATA
TCTGTGGTGTAATGATGGCCTTTGTTAAACACATATTCCGTGAGGTGCCAGTCTTTATGTGTAG
CATATTTAAGTATATATATTACACATACACGTTTGTCTGATAGATGTGCAATAACCAAGGAGTA
TGTATATGTTTTCTTTGGGGAAACTGGACACGTTTCAAAACAGGGATGTTTCTTTCTGGGCAAA
GCAGAGTTAGACATTTTTGCCTTCATGGCTAGTCACTAGTCTGTAACATCCGTGATGCCCTATA
AACCTTATGTGAAGAAAAGCCTGGGATGAAGCAATTTTCTCCCGGGTCTAAGCTAAAACGATCA
CTTTGTTTATGGGAGAGTCGATCCAGCAAGCCAGGCCCAGCCAGTGCTAGCCTTCCGTGTGAAA
TGTGAAGCTGTCCGTGGCCTCTTCTGTGGGCCTGAACGCTAGACGCTGGTGCAGAGGAAGCAGC
CGCTTCTCACTGTGCTTTTGTAGACCGTGTTAATGCTGGACCACTGTCTCTGAGGCCTAGGCTC
ACACCTTCTTAGCCATAAGGGTCTGGCTTAGGACAGACCATTCCGTGCAATAACACGTGGCTGC
TGGGAGTCCCGGGCCTGTATGTGTGTGTTTTGGGGAGCGAAAACTCAAGGCCAAAAGCGTTCCA
GGGATGAATGGGGGCTTCTGAGACTATGGGGACCTCCATAGCCCAGTGGGTCCGTGGGTGCTGT
GAAAGGACTGTGCACCACTTGGTGTTCCATAGCCACTTGAGCCAAATGTAAAATTGTCCTTAGA
GCTGACGGACTCAGTGAGAGCCTTCAGATGTGGGTCATCTTGTTACAAGGAACTGCACACTGTT
GGTCTAGCCTCCATTAGGATTCTGTACTTAAGGATTTTCACAATGTCCTCCCTTCCCCTCTTGA
GATCTGAATTAAATCTGATTTCGCAAACTC

hide sequence

RefSeq Acc Id:

XM_017590688 ⟹ XP_017446177

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	27,016,696 - 27,169,830 (+)	NCBI
mRatBN7.2	2	25,281,776 - 25,428,128 (+)	NCBI
Rnor_6.0	2	23,705,491 - 23,851,218 (+)	NCBI

Sequence:

show sequence

GGGATGCTGTGTGGCAGCGGCCGGCCTGGGCTGCGAGGTTCGGCCGCCTCCTCCCGCTGCGCCC
GCCCCTCGGCCTCCGCCCCGGCGCCGCCGACCCTCGTCTGCTCCCGCCCTCGCCCCTGCGGGTC
CGCGGGGGCCAGACCGAGGCTGCAGCGAGGAGGCGGCACGGAGAGCGCGGCTGAGGAAGGCTGC
ACGCGCCGGACCCAGAGCGGGGCGTTAGGAGCCGGCTGCCCCGGCCAGGTGGTGTTTTTCTAAA
GTTGTTCACTGAGGCTTCTCAGCATTGCTGCCAAGATAAACAGGTGAGGCTGCTGGCCGCTGGG
ACTCAGCACTCCGTATGAATGCCGTCAGCCCGGGATCCAGACCTCACTGCTTCTGCTGCCTCGG
ACGGGACTGAGCGACCCTCGCCGAGACTTCCTTCTCGGACTTCCTCGCCACTCACAGCTGTCTT
TCTGGATTGACACCGTGGACTTCCAGCCTCGCTTTCCCACCGTGAACATCAATATGTGTCATGT
CATTGTCACCTGCCGCTCGATGCTCTGGACCCTCCTGAGTATCGTGGTGGCCTTTGCTGAACTC
GTTGCCTTCATGAGCGCCGACTGGCTCATCGGGAAAGCCAAGACCCGCAGCGGCGACGAGCAGG
CAGGCATGGACTCGGAGCCCCACTACCTGGGCATCCTCTGCCTCCGCACCCCTGCCATGCAGCA
AGTCCCTCGGGACACACTGTGCGGGACCTATGCCAAGAGCTTTGGGGAGATAGCCAGCGGCTTC
TGGCAGGCTACCGCTATTTTCCTGGCCATGGGGATCTTCATTCTCTGCGTAGTGGCTTTGGTGT
CCGTCTTCACCATGTGCGTGCAAAGCATCATGAGGAAAAGCATTTTCAACGTCTGCGGGCTCCT
GCAGGGAATCGCAGGTCTGTTCCTTATCCTCGGCCTGGTCCTCTACCCTGCAGGCTGGGGCTGC
CAGAAAGCCATCGACTGTGGACGATATGCATCCCCCTACAAACCTGGAGACTGTTCCTTGGGCT
GGGCCTTTTACACTGCCACCGGGGGCACAGTCCTCACCTTTATCTGTGCTGTCTTCTCCGCACA
AGCAGAAATTGCGACCTCCAGTGACAAAGTCCAGGAAGAAATTGAAGAGGGGAAAAACCTCATT
TGCCTCCTTTAGTCTGGAAGACCTCACTGCCACCGTTACCTTTCCTTTATGGCCTTGTGACACA
GTCTTCATCATTCGAATCAAGTGAAGAACCAGCCTTGACCTACCGGAGCCATACTCCACAGCTC
CGGGCCTCCGTGGGACCAGTGAGCGGTACCACCCACCAAGTAGAGCTCTTGGACATACGAGCTG
GCAGTGCTAATGAGACCAGACAAGGACATGGTATGGTCCCTGTGGAGTCCTGTGGGAGACTCCA
TCTCCCTGGGGCTCAATGAAGGATAGTGATCTGACTCACCAAGGCAGGCAGCAACCTCTCTGTC
CGCAGATGAGAGGATACCCAGCCTCAGGGGAGTTTGAGGCAGGCTTTTGGCCCACAGCTATGTG
TTTACGAGCATCTCAGAATGGCGGGTGGAGGTGGGGACCTTGGTTTTCTTCCTATTTCTTTCAT
GTTGTCTCACTTGAGGACTGAAAGGAAGACAGCAGGCTTACGTGACAGGTTAAATGCTGAAGGT
GACAGCAAGATGCCAGGCTTTGCTTAACTGCACAAAGGCCTTAACAGGGACAGAGCAGAACCCC
ACTGTGGACCTTCTCCAGTCTGAGTTCCAGGGTCAGAGGCATCAAGTGGAACTCTCCTCAGGAT
TTGAGTAAAGAAAGACAATCAGAATGAAAGTACAAACCCCAGGCAGTAAGGCAGACACCTCCTG
CTTCCTGCAGTCAGCCTAGTGCCTGTGGTAGCCCTGTCTCTTCTGATAGTTTTCGCCTAGGGTT
GGGGTTGTGCTTGGCTGCCCAGGGAAACCTCAGTGTTCCTTGCTTCCAAGGATTAGAGCCTCCA
GACCAGCTGTGGTTCGTGCAGATGTACGCAGGGAGGGGTTGCCAGAACCTCTGCCTTTGCAGAG
TGAGCTTTTCTGTTTGGTGACTTAGCTTTCCAATCCCACTGGCATTATCTGAAGAGAAAGCAGG
AGCTAGCCCTGGAAGCTGTCTCTAGCTTCTGGTGTGGATCCGCAGAGCAGGCTGGATGACACTG
GCTCACTGCCCTGCTGTATCCAGAATCCCATCGGCAGGTTAGCGTGAAAGCAGGGGCCGGGCCA
AACTCATTGTGCCTGCCTACGCAGGTCACAGAACCCCCAAATGCCTACTAAAGAGGACTCAGGG
CTTTTAACCCAGTTTCCATAATTACCCCTTTGACCAAAGCAGCCAGAAAGCCCAGTCTGGCATC
ATATGAACCTTGGAGACACAGAGACCCTTCATAGGGGTGCAAGTGGAGTGGACCTGTTTGGTTT
TAGAGATGGCAGGTTGAGGCTTTTGTCTTTGAGTTAAGTAGTGAAACCTTCTGCCGCCGGGCAT
TTGCTTACCAGGTATACAGCCTTGCCCCGGTGCAGCACTGTGTCAGTTTAGAGTCTGCCTTGGT
CCAGACAACTCCCTTATCTATAGATGGGCTAGGCCCCCAGGGGTTTAACTGTAGGATATTTACC
CTTTGGCCTATATCAAACCGTCTTATCTCTCATGCAGATGAAAGTTATGGAAGGGTACTGAATC
AGATCTTAAGTTCAGTTTTGAACCAGTATTCAAAATAAGCTAGGTAGACACCCCGTGGCTTCTT
TGAAAGAGAAAGGGGAGGCACCCTAAGCAGCCCTAGGAATGCTCAGGAAACCGGAACAGATCAC
TAAGGACACATGCCACTGAGCATATGGAGAAAGCGCTTCACTGGGTATTGATGACGTTGTCCTA
TGCAATCCTTGAAGCGCAGTAACTGTGTTTCCAACCCGGGCAGTACTTTGCACGAAACACAGTT
TTGTTCACTAGGAAAACTGTGACAAAACCACTTCATTTTCCTTGAATTTACCAGATTAACTTTT
CCATCTTTATGACCTTAGCCCCTTCCTCACAGACCAATCCTAGTCCACAGGTCCTGTGTGCATG
CCCAGCCCCTGCTCTTTGGGGTCAGAGGGCAGTGGACTCCTAGCAACCTGGTAACAGTCACGAG
TGAAGTCATGACCTCTCTGCCACACTGTTACTCCACTGTTTCTCATTAATTTAAACGTTAGGGA
AGACAGCCCCACCACAGAAGAGCACAATGAAAACTGCTACATGCTGACTTAATGGAACTAGATT
GCATTCTATAGCAGAGAGACCTTCACACCAATGCACAGACCTTTGCAGGAAATGAAGGACCATC
TACAACTGTACTAGTACAGAATGGGACTCGGCTCCTGGCTCTTTAAAACCACTTGCTGGCCGAT
ACCCGGTTCTCGGAGGATGGGACCATTGCTACTACCAGAAACGTCTTCTCTTGCCTGCGTTTGT
GCTGAGCTTCTCATTGAACTCTAAAGCAGAAACACTTGGGAGTCTGTGGCTTCTTTAAACCTGT
GTGGTAATTCAACATTGCATTTGTAACTGTGGAAGGGTCCTTGAAATATCTGTGGTGTAATGAT
GGCCTTTGTTAAACACATATTCCGTGAGGTGCCAGTCTTTATGTGTAGCATATTTAAGTATATA
TATTACACATACACGTTTGTCTGATAGATGTGCAATAACCAAG

hide sequence

RefSeq Acc Id:

XM_017590692 ⟹ XP_017446181

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	27,133,184 - 27,169,830 (+)	NCBI
mRatBN7.2	2	25,398,288 - 25,428,128 (+)	NCBI
Rnor_6.0	2	23,821,139 - 23,848,816 (+)	NCBI

Sequence:

show sequence

GTGTCTGTGTGTCTGTGTGTGTCTGTCTAGACAGTGGCACACATCACTGCTTGGGGGGGCACAG
TCACCCCAGGCAAGATGAGAACCCCTGCTTCAGTGGCTTCCCAGAGGATCAGAGGTATGAGGAG
GAGACGCTTGTCCTGGGAGCTGAGAAAGATTATGGACCGAAGCTGGAAGGTGCTGGGCACAGTC
AGCTCAAAGAACAGAGTACTTGCTGGGGCATTTGACAGGCAGAACGATTTTCTGTAACCAGTAT
GTCCTGTGGGGCAGTCAGAGCAAAGGCTTGAGAGGCCTCCTCTGGTGGCCTCGTTTAAAATCTG
AAGACAAAGAAAGCAGCCATGCAAGGTGCTTCTCCTCTCATACGAGCATAGGCCGTGCACATTG
CCTGTGGGGAAAGGTCCCAAGCCATCAGGGAGTTCCCTCGCCGTCCTGGGATTTGCTGGAGCAC
AGCTGCTCTGCTGAATCCCTTGTTCCCATTGACTTGGGAGCCCTCCTGAGCTCGACAGAGAACT
GGTGGCCGGCCAGCCGCTGGCTGTGTCCTGATCACACTGGGTCACACCCCTGTGTCTTCCTCCT
TCCTTCATAAACTATGACAGAATGTGGTGGGAACTGGTTAGAGGTGCAGGTCCCCCCTCCCCAA
CACCTCCCTGCAGGAGTGGGGTGGAGAGTGGGGGGTCCTTGTCCCCTACCTTCTGGTAGTGAAG
GGTCTTCTTCACTCTCAGAGGCAAAATCACAAGCAGTTGGCTTTATCCAACTGTCTCATGCTTG
CACAAGACCTGGGGGTTGAAGGCCAATTTGCTAAGCCTTTTGTGTGGTTCCCGTGTCTAGGAGA
GACAGCAATAATCCAGAAATGGGCCAAGAAACAAAGAGCTTCTCAGAAGCATATGGTTAGATGT
GCTCCCCCAGATCAAGGTAGTAAATTTACTGATATTTGGGGCTTATATTGTTAATTTAATATTT
TATCCTTCCATACTTAGAGTTCACCAGCAGAAAAAGTTCTCCCTCCCCTTTGGTGTTTTCAGTG
TAAATTACTTAAGCTTTGTGTTTTGAAACCTGTATGGTATTTCTGTTTCTATAAAGCTCCTGGA
GGGCCACTCTGGCCAGGGACCCACCCACCTTCAGTCCCTCAGAGACCAAAGCTGGAGTTGGGAG
AATTCCTTACAGAGTCTGTTAGCAGGTTCCTCAGCTAACACTGGGCCGCCATTTTTACCAGAGC
TCTGACCTGGGGCCACTTCCTTTTGCCCCACTGATTTGTTGGCCCTTGCCTTCCTTTGCCACTT
TCTAGAGTTTTTCTTTTCGTCATCCTCGGGTTGTGTCACAAAACTGGAGCCTGGGGGACCATGC
AGTCTCAGTAGAACAAAAGGATCCCTGCCCCCCAAAACTGATATTTTGTCAGTACTCCCTGTGT
CCTCAGTGTTATGCTAATCCCATGGTGGCAGTGAGGAATGGCTGGCACCGTGGACTGGATGCTG
TGCTTCTCGTCATTCAGATGCCCACATCTTACTCCTCACTGCAGCCGTGGGGAGCAGGGCACTG
TTCTATTCTGGGGGATGAGGAAGCCAGACATGCAGAGGCTAAATACAAACAGCCTGTCTGAGAG
CACCGTTTTTGATTGGCAGAACCAAGGAGGTCTGAGGTCTGTGTATGAAGCTTTGAAAAGCACT
GTCCCACCCCGTCATGTGGTGTGCATGCCCTTCGCACAGGATGGCATTGCTTGCCGAGGGGCAC
AGCGGGCAGAGAACAACGCCAGAGGACAGCATGTTTGTCCTTTTCCAGTAGAGTCTCTGGATGG
CCTGGGGTCTCCAGGATGCTGTGAGGCTGCTGGCCGCTGGGACTCAGCACTCCGTATGAATGCC
GTCAGCCCGGGATCCAGACCTCACTGCTTCTGCTGCCTCGGACGGGACTGAGCGACCCTCGCCG
AGACTTCCTTCTCGGACTTCCTCGCCACTCACAGCTGTCTTTCTGGATTGACACCGTGGACTTC
CAGCCTCGCTTTCCCACCGTGAACATCAATATGTGTCATGTCATTGTCACCTGCCGCTCGATGC
TCTGGACCCTCCTGAGTATCGTGGTGGCCTTTGCTGAACTCGTTGCCTTCATGAGCGCCGACTG
GCTCATCGGGAAAGCCAAGACCCGCAGCGGCGACGAGCAGGCAGGCATGGACTCGGAGCCCCAC
TACCTGGGCATCCTCTGCCTCCGCACCCCTGCCATGCAGCAAGTCCCTCGGGACACACTGTGCG
GGACCTATGCCAAGAGCTTTGGGGAGATAGCCAGCGGCTTCTGGCAGGCTACCGCTATTTTCCT
GGCCATGGGGATCTTCATTCTCTGCGTAGTGGCTTTGGTGTCCGTCTTCACCATGTGCGTGCAA
AGCATCATGAGGAAAAGCATTTTCAACGTCTGCGGGCTCCTGCAGGGAATCGCAGGTCTGTTCC
TTATCCTCGGCCTGGTCCTCTACCCTGCAGGCTGGGGCTGCCAGAAAGCCATCGACTGTGGACG
ATATGCATCCCCCTACAAACCTGGAGACTGTTCCTTGGGCTGGGCCTTTTACACTGCCACCGGG
GGCACAGTCCTCACCTTTATCTGTGCTGTCTTCTCCGCACAAGCAGAAATTGCGACCTCCAGTG
ACAAAGTCCAGGAAGAAATTGAAGAGGGGAAAAACCTCATTTGCCTCCTTTAGTCTGGAAGACC
TCACTGCCACCGTTACCTTTCCTTTATGGCCTTGTGACACAGTCTTCATCATTCGAATCAAGTG
AAGAACCAGCCTTGACCTACCGGAGCCATACTCCACAGCTCCGGGCCTCC

hide sequence

RefSeq Acc Id:

XM_039101908 ⟹ XP_038957836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	27,133,162 - 27,169,830 (+)	NCBI
mRatBN7.2	2	25,398,264 - 25,428,128 (+)	NCBI

RefSeq Acc Id:

XM_039101909 ⟹ XP_038957837

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	27,136,854 - 27,169,830 (+)	NCBI
mRatBN7.2	2	25,401,949 - 25,428,128 (+)	NCBI

RefSeq Acc Id:

XM_039101911 ⟹ XP_038957839

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	27,016,698 - 27,169,830 (+)	NCBI
mRatBN7.2	2	25,281,771 - 25,428,128 (+)	NCBI

RefSeq Acc Id:

XM_039101912 ⟹ XP_038957840

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	27,137,121 - 27,169,830 (+)	NCBI
mRatBN7.2	2	25,402,554 - 25,428,128 (+)	NCBI

RefSeq Acc Id:

XM_063281486 ⟹ XP_063137556

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	27,016,404 - 27,067,283 (+)	NCBI

RefSeq Acc Id:

XM_063281487 ⟹ XP_063137557

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	27,021,414 - 27,067,283 (+)	NCBI

RefSeq Acc Id:

XM_063281488 ⟹ XP_063137558

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	27,021,162 - 27,169,830 (+)	NCBI

RefSeq Acc Id:

XM_063281489 ⟹ XP_063137559

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	27,137,280 - 27,169,830 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099872	(Get FASTA)	NCBI Sequence Viewer
	NP_001416073	(Get FASTA)	NCBI Sequence Viewer
	XP_017446177	(Get FASTA)	NCBI Sequence Viewer
	XP_017446181	(Get FASTA)	NCBI Sequence Viewer
	XP_038957836	(Get FASTA)	NCBI Sequence Viewer
	XP_038957837	(Get FASTA)	NCBI Sequence Viewer
	XP_038957839	(Get FASTA)	NCBI Sequence Viewer
	XP_038957840	(Get FASTA)	NCBI Sequence Viewer
	XP_063137556	(Get FASTA)	NCBI Sequence Viewer
	XP_063137557	(Get FASTA)	NCBI Sequence Viewer
	XP_063137558	(Get FASTA)	NCBI Sequence Viewer
	XP_063137559	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM10071	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014795.5

RefSeq Acc Id:

NP_001099872 ⟸ NM_001106402

- UniProtKB:

D4A0X7 (UniProtKB/TrEMBL), A6I4W3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCHVIVTCRSMLWTLLSIVVAFAELVAFMSADWLIGKAKTRSGDEQAGMDSEPHYLGILCLRTP
AMQQVPRDTLCGTYAKSFGEIASGFWQATAIFLAMGIFILCVVALVSVFTMCVQSIMRKSIFNV
CGLLQGIAGLFLILGLVLYPAGWGCQKAIDCGRYASPYKPGDCSLGWAFYTATGGTVLTFICAV
FSAQAEIATSSDKVQEEIEEGKNLICLL

hide sequence

RefSeq Acc Id:

XP_017446177 ⟸ XM_017590688

- Peptide Label:

isoform X3

- Sequence:

show sequence

MCHVIVTCRSMLWTLLSIVVAFAELVAFMSADWLIGKAKTRSGDEQAGMDSEPHYLGILCLRTP
AMQQVPRDTLCGTYAKSFGEIASGFWQATAIFLAMGIFILCVVALVSVFTMCVQSIMRKSIFNV
CGLLQGIAGLFLILGLVLYPAGWGCQKAIDCGRYASPYKPGDCSLGWAFYTATGGTVLTFICAV
FSAQAEIATSSDKVQEEIEEGKNLICLL

hide sequence

RefSeq Acc Id:	XP_017446181 ⟸ XM_017590692
- Peptide Label:	isoform X3
- UniProtKB:	D4A0X7 (UniProtKB/TrEMBL), A6I4W3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCHVIVTCRSMLWTLLSIVVAFAELVAFMSADWLIGKAKTRSGDEQAGMDSEPHYLGILCLRTP AMQQVPRDTLCGTYAKSFGEIASGFWQATAIFLAMGIFILCVVALVSVFTMCVQSIMRKSIFNV CGLLQGIAGLFLILGLVLYPAGWGCQKAIDCGRYASPYKPGDCSLGWAFYTATGGTVLTFICAV FSAQAEIATSSDKVQEEIEEGKNLICLL hide sequence

Ensembl Acc Id:

ENSRNOP00000014795 ⟸ ENSRNOT00000014795

RefSeq Acc Id:	XP_038957839 ⟸ XM_039101911
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038957836 ⟸ XM_039101908
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038957837 ⟸ XM_039101909
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038957840 ⟸ XM_039101912
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063137556 ⟸ XM_063281486
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063137558 ⟸ XM_063281488
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063137557 ⟸ XM_063281487
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063137559 ⟸ XM_063281489
- Peptide Label:	isoform X3
- UniProtKB:	A6I4W3 (UniProtKB/TrEMBL), D4A0X7 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A0X7-F1-model_v2	AlphaFold	D4A0X7	1-220	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309869	AgrOrtholog
BioCyc Gene	G2FUF-54834	BioCyc
Ensembl Genes	ENSRNOG00000011032	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014795.8	UniProtKB/TrEMBL
Gene3D-CATH	1.20.140.150	UniProtKB/TrEMBL
InterPro	Lipome_HGMIC_fus_partner-like	UniProtKB/TrEMBL
KEGG Report	rno:294643	UniProtKB/TrEMBL
NCBI Gene	294643	ENTREZGENE
PANTHER	LHFPL TETRASPAN SUBFAMILY MEMBER 2 PROTEIN	UniProtKB/TrEMBL
	PTHR12489	UniProtKB/TrEMBL
Pfam	L_HGMIC_fpl	UniProtKB/TrEMBL
PhenoGen	Lhfpl2	PhenoGen
RatGTEx	ENSRNOG00000011032	RatGTEx
UniProt	A6I4W3	ENTREZGENE, UniProtKB/TrEMBL
	D4A0X7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-07-05	Lhfpl2	LHFPL tetraspan subfamily member 2	Lhfpl2	lipoma HMGIC fusion partner-like 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Lhfpl2	lipoma HMGIC fusion partner-like 2	Lhfpl2_predicted	lipoma HMGIC fusion partner-like 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Lhfpl2_predicted	lipoma HMGIC fusion partner-like 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD