Lhfpl2 (lipoma HMGIC fusion partner-like 2) - Rat Genome Database

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Gene: Lhfpl2 (lipoma HMGIC fusion partner-like 2) Mus musculus
Analyze
Symbol: Lhfpl2
Name: lipoma HMGIC fusion partner-like 2
RGD ID: 1320444
MGI Page MGI
Description: Involved in development of primary female sexual characteristics; development of primary male sexual characteristics; and positive regulation of fertilization. Predicted to localize to membrane. Is expressed in several structures, including hemolymphoid system gland; liver; lung; reproductive system; and tail unsegmented mesenchyme. Orthologous to human LHFPL2 (LHFPL tetraspan subfamily member 2); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 6030465B15; AI447312; AW050335; lipoma HMGIC fusion partner-like 2 protein; mKIAA0206; vg; vgim
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391394,193,659 - 94,331,918 (+)NCBIGRCm39mm39
GRCm39 Ensembl1394,194,304 - 94,331,917 (+)Ensembl
GRCm381394,057,152 - 94,195,410 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1394,057,796 - 94,195,409 (+)EnsemblGRCm38mm10GRCm38
MGSCv371394,827,751 - 94,965,364 (+)NCBIGRCm37mm9NCBIm37
MGSCv361395,158,549 - 95,296,163 (+)NCBImm8
Celera1397,679,541 - 97,817,771 (+)NCBICelera
Cytogenetic Map13C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14621295   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:21917142   PMID:25917818   PMID:26964900   PMID:29555813  


Genomics

Comparative Map Data
Lhfpl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391394,193,659 - 94,331,918 (+)NCBIGRCm39mm39
GRCm39 Ensembl1394,194,304 - 94,331,917 (+)Ensembl
GRCm381394,057,152 - 94,195,410 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1394,057,796 - 94,195,409 (+)EnsemblGRCm38mm10GRCm38
MGSCv371394,827,751 - 94,965,364 (+)NCBIGRCm37mm9NCBIm37
MGSCv361395,158,549 - 95,296,163 (+)NCBImm8
Celera1397,679,541 - 97,817,771 (+)NCBICelera
Cytogenetic Map13C3NCBI
LHFPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl578,485,215 - 78,770,021 (-)EnsemblGRCh38hg38GRCh38
GRCh38578,485,224 - 78,770,256 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37577,781,053 - 77,944,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36577,816,794 - 77,980,404 (-)NCBINCBI36hg18NCBI36
Build 34577,816,809 - 77,841,867NCBI
Celera573,674,222 - 73,837,829 (-)NCBI
Cytogenetic Map5q14.1NCBI
HuRef572,987,888 - 73,135,012 (-)NCBIHuRef
CHM1_1577,214,339 - 77,377,632 (-)NCBICHM1_1
Lhfpl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2225,281,771 - 25,428,128 (+)NCBI
Rnor_6.0 Ensembl223,770,721 - 23,852,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0223,705,491 - 23,852,021 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0242,878,147 - 43,023,911 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4224,407,387 - 24,489,407 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1224,384,047 - 24,406,455 (+)NCBI
Celera221,418,069 - 21,501,439 (+)NCBICelera
Cytogenetic Map2q12NCBI
Lhfpl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542522,504,107 - 22,557,970 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542522,398,503 - 22,556,667 (+)NCBIChiLan1.0ChiLan1.0
LHFPL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1537,151,995 - 37,314,043 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl537,289,046 - 37,314,043 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0536,663,171 - 36,825,272 (+)NCBIMhudiblu_PPA_v0panPan3
LHFPL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1328,255,389 - 28,279,510 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha329,367,033 - 29,520,677 (+)NCBI
ROS_Cfam_1.0328,049,631 - 28,203,008 (+)NCBI
UMICH_Zoey_3.1327,985,849 - 28,139,437 (+)NCBI
UNSW_CanFamBas_1.0327,964,071 - 28,117,601 (+)NCBI
UU_Cfam_GSD_1.0328,291,124 - 28,444,925 (+)NCBI
Lhfpl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213184,321,166 - 184,460,783 (+)NCBI
SpeTri2.0NW_0049365496,398,190 - 6,537,832 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LHFPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl287,322,934 - 87,498,724 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1287,321,119 - 87,498,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2288,879,254 - 88,970,752 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LHFPL2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1472,738,214 - 72,769,384 (-)NCBI
ChlSab1.1 Ensembl472,737,678 - 72,835,153 (-)Ensembl
Vero_WHO_p1.0NW_02366604921,585,518 - 21,745,975 (-)NCBI
Lhfpl2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248692,991,062 - 3,146,048 (-)NCBI

Position Markers
AI447312  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381394,195,047 - 94,195,174UniSTSGRCm38
MGSCv371394,965,002 - 94,965,129UniSTSGRCm37
Celera1397,817,409 - 97,817,536UniSTS
Cytogenetic Map13D1UniSTS
Whitehead/MRC_RH13827.8UniSTS
Whitehead/MRC_RH13809.44UniSTS
UniSTS:237079  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381394,193,274 - 94,193,515UniSTSGRCm38
MGSCv371394,963,229 - 94,963,470UniSTSGRCm37
Celera1397,815,625 - 97,815,866UniSTS
Cytogenetic Map13D1UniSTS
UniSTS:237082  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381394,194,306 - 94,194,512UniSTSGRCm38
MGSCv371394,964,261 - 94,964,467UniSTSGRCm37
Celera1397,816,655 - 97,816,861UniSTS
Cytogenetic Map13D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20293442112761890Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133587692596102654Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55572541112294569Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55572541112294569Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55572541112294569Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55572541112294569Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356322643105285678Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135648143696102654Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136410270298102826Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136410270298102826Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366596482100596627Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1367905880101906000Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368068947102068947Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1369963165103963165Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined75984481112294569Mouse
1301610Dps1_mdelta power in slow-wave sleep 1 (mouse)Not determined137704774395594386Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1377900000111900000Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379102537113102654Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382603460116603598Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383739552117739748Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386000000120000000Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386205109120205250Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87753866112294569Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391247158120421639Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391828769120421639Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393738733120421639Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3787
Count of miRNA genes:781
Interacting mature miRNAs:1039
Transcripts:ENSMUST00000054274, ENSMUST00000118195, ENSMUST00000120051, ENSMUST00000121618, ENSMUST00000131595, ENSMUST00000144838, ENSMUST00000156071
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_172589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC137680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC148334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000054274   ⟹   ENSMUSP00000062239
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1394,057,796 - 94,195,409 (+)Ensembl
RefSeq Acc Id: ENSMUST00000118195   ⟹   ENSMUSP00000112655
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1394,172,810 - 94,194,517 (+)Ensembl
RefSeq Acc Id: ENSMUST00000120051   ⟹   ENSMUSP00000113786
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1394,134,740 - 94,174,326 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121618   ⟹   ENSMUSP00000113468
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1394,173,992 - 94,195,409 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131595
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1394,173,774 - 94,174,213 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144838
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1394,057,832 - 94,123,974 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156071   ⟹   ENSMUSP00000117113
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1394,083,511 - 94,174,640 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221096   ⟹   ENSMUSP00000152453
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1394,094,461 - 94,174,280 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223423   ⟹   ENSMUSP00000152241
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1394,117,942 - 94,174,646 (+)Ensembl
RefSeq Acc Id: NM_172589   ⟹   NP_766177
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391394,194,304 - 94,331,917 (+)NCBI
GRCm381394,057,796 - 94,195,409 (+)NCBI
MGSCv371394,827,751 - 94,965,364 (+)RGD
Celera1397,679,541 - 97,817,771 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011244639   ⟹   XP_011242941
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391394,194,026 - 94,331,918 (+)NCBI
GRCm381394,057,649 - 94,195,410 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011244640   ⟹   XP_011242942
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391394,194,026 - 94,331,918 (+)NCBI
GRCm381394,057,649 - 94,195,410 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011244641   ⟹   XP_011242943
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391394,220,024 - 94,331,918 (+)NCBI
GRCm381394,081,816 - 94,195,410 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011244642   ⟹   XP_011242944
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391394,230,974 - 94,331,918 (+)NCBI
GRCm381394,094,348 - 94,195,410 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011244643   ⟹   XP_011242945
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391394,310,221 - 94,331,918 (+)NCBI
GRCm381394,173,759 - 94,195,410 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247231   ⟹   XP_030103091
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391394,193,659 - 94,331,918 (+)NCBI
GRCm381394,057,155 - 94,191,931 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158012   ⟹   XP_036013905
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391394,194,026 - 94,331,918 (+)NCBI
RefSeq Acc Id: XM_036158013   ⟹   XP_036013906
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391394,194,026 - 94,331,918 (+)NCBI
RefSeq Acc Id: XM_036158014   ⟹   XP_036013907
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391394,194,026 - 94,331,918 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_766177   ⟸   NM_172589
- UniProtKB: Q8BGA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011242941   ⟸   XM_011244639
- Peptide Label: isoform X1
- UniProtKB: Q8BGA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011242943   ⟸   XM_011244641
- Peptide Label: isoform X1
- UniProtKB: Q8BGA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011242944   ⟸   XM_011244642
- Peptide Label: isoform X1
- UniProtKB: Q8BGA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011242942   ⟸   XM_011244640
- Peptide Label: isoform X1
- UniProtKB: Q8BGA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011242945   ⟸   XM_011244643
- Peptide Label: isoform X1
- UniProtKB: Q8BGA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030103091   ⟸   XM_030247231
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000152241   ⟸   ENSMUST00000223423
RefSeq Acc Id: ENSMUSP00000112655   ⟸   ENSMUST00000118195
RefSeq Acc Id: ENSMUSP00000062239   ⟸   ENSMUST00000054274
RefSeq Acc Id: ENSMUSP00000113786   ⟸   ENSMUST00000120051
RefSeq Acc Id: ENSMUSP00000152453   ⟸   ENSMUST00000221096
RefSeq Acc Id: ENSMUSP00000117113   ⟸   ENSMUST00000156071
RefSeq Acc Id: ENSMUSP00000113468   ⟸   ENSMUST00000121618
RefSeq Acc Id: XP_036013905   ⟸   XM_036158012
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036013906   ⟸   XM_036158013
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036013907   ⟸   XM_036158014
- Peptide Label: isoform X1

Promoters
RGD ID:8681022
Promoter ID:EPDNEW_M18542
Type:initiation region
Name:Lhfpl2_3
Description:Mus musculus lipoma HMGIC fusion partner-like 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18543  EPDNEW_M18544  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381394,057,805 - 94,057,865EPDNEW
RGD ID:8681024
Promoter ID:EPDNEW_M18543
Type:single initiation site
Name:Lhfpl2_2
Description:Mus musculus lipoma HMGIC fusion partner-like 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18542  EPDNEW_M18544  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381394,095,190 - 94,095,250EPDNEW
RGD ID:8681026
Promoter ID:EPDNEW_M18544
Type:initiation region
Name:Lhfpl2_1
Description:Mus musculus lipoma HMGIC fusion partner-like 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18542  EPDNEW_M18543  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381394,174,055 - 94,174,115EPDNEW
RGD ID:6824097
Promoter ID:MM_KWN:14928
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0
Transcripts:NM_172589,   OTTMUST00000068585
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361394,827,616 - 94,828,116 (+)MPROMDB
RGD ID:6824098
Promoter ID:MM_KWN:14930
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:ENSMUST00000120051
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361394,904,386 - 94,904,886 (+)MPROMDB
RGD ID:6824096
Promoter ID:MM_KWN:14932
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:ENSMUST00000118195
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361394,942,731 - 94,943,231 (+)MPROMDB
RGD ID:6824100
Promoter ID:MM_KWN:14933
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain
Transcripts:ENSMUST00000121618,   OTTMUST00000068588
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361394,943,931 - 94,944,431 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2145236 AgrOrtholog
Ensembl Genes ENSMUSG00000045312 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000062239 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112655 UniProtKB/Swiss-Prot
  ENSMUSP00000113468 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113786 UniProtKB/TrEMBL
  ENSMUSP00000117113 UniProtKB/TrEMBL
  ENSMUSP00000152241 UniProtKB/TrEMBL
  ENSMUSP00000152453 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000054274 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000118195 UniProtKB/Swiss-Prot
  ENSMUST00000120051 UniProtKB/TrEMBL
  ENSMUST00000121618 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000156071 UniProtKB/TrEMBL
  ENSMUST00000221096 UniProtKB/TrEMBL
  ENSMUST00000223423 UniProtKB/TrEMBL
InterPro LHFPL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:218454 UniProtKB/Swiss-Prot
MGD MGI:2145236 ENTREZGENE
NCBI Gene 218454 ENTREZGENE
PANTHER PTHR12489 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam L_HMGIC_fpl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lhfpl2 PhenoGen
UniProt A0A1Y7VJ20_MOUSE UniProtKB/TrEMBL
  A0A1Y7VNJ3_MOUSE UniProtKB/TrEMBL
  D3Z4C4_MOUSE UniProtKB/TrEMBL
  D3Z698_MOUSE UniProtKB/TrEMBL
  LHPL2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE