LHFPL2 (LHFPL tetraspan subfamily member 2) - Rat Genome Database

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Gene: LHFPL2 (LHFPL tetraspan subfamily member 2) Sus scrofa
Analyze
Symbol: LHFPL2
Name: LHFPL tetraspan subfamily member 2
RGD ID: 14278569
Description: INVOLVED IN development of primary female sexual characteristics (inferred); development of primary male sexual characteristics (inferred); positive regulation of fertilization (inferred); ASSOCIATED WITH COVID-19 (ortholog); IgA glomerulonephritis (ortholog); mucopolysaccharidosis VI (ortholog); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: lipoma HMGIC fusion partner-like 2 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl287,322,934 - 87,498,724 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1287,321,119 - 87,498,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2288,879,254 - 88,970,752 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
LHFPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl287,322,934 - 87,498,724 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1287,321,119 - 87,498,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2288,879,254 - 88,970,752 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LHFPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl578,485,215 - 78,770,021 (-)EnsemblGRCh38hg38GRCh38
GRCh38578,485,224 - 78,770,256 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37577,781,053 - 77,944,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36577,816,794 - 77,980,404 (-)NCBINCBI36hg18NCBI36
Build 34577,816,809 - 77,841,867NCBI
Celera573,674,222 - 73,837,829 (-)NCBI
Cytogenetic Map5q14.1NCBI
HuRef572,987,888 - 73,135,012 (-)NCBIHuRef
CHM1_1577,214,339 - 77,377,632 (-)NCBICHM1_1
Lhfpl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391394,193,659 - 94,331,918 (+)NCBIGRCm39mm39
GRCm39 Ensembl1394,194,304 - 94,331,917 (+)Ensembl
GRCm381394,057,152 - 94,195,410 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1394,057,796 - 94,195,409 (+)EnsemblGRCm38mm10GRCm38
MGSCv371394,827,751 - 94,965,364 (+)NCBIGRCm37mm9NCBIm37
MGSCv361395,158,549 - 95,296,163 (+)NCBImm8
Celera1397,679,541 - 97,817,771 (+)NCBICelera
Cytogenetic Map13C3NCBI
Lhfpl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2225,281,771 - 25,428,128 (+)NCBI
Rnor_6.0 Ensembl223,770,721 - 23,852,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0223,705,491 - 23,852,021 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0242,878,147 - 43,023,911 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4224,407,387 - 24,489,407 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1224,384,047 - 24,406,455 (+)NCBI
Celera221,418,069 - 21,501,439 (+)NCBICelera
Cytogenetic Map2q12NCBI
Lhfpl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542522,504,107 - 22,557,970 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542522,398,503 - 22,556,667 (+)NCBIChiLan1.0ChiLan1.0
LHFPL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1537,151,995 - 37,314,043 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl537,289,046 - 37,314,043 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0536,663,171 - 36,825,272 (+)NCBIMhudiblu_PPA_v0panPan3
LHFPL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1328,255,389 - 28,279,510 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha329,367,033 - 29,520,677 (+)NCBI
ROS_Cfam_1.0328,049,631 - 28,203,008 (+)NCBI
UMICH_Zoey_3.1327,985,849 - 28,139,437 (+)NCBI
UNSW_CanFamBas_1.0327,964,071 - 28,117,601 (+)NCBI
UU_Cfam_GSD_1.0328,291,124 - 28,444,925 (+)NCBI
Lhfpl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213184,321,166 - 184,460,783 (+)NCBI
SpeTri2.0NW_0049365496,398,190 - 6,537,832 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LHFPL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1472,738,214 - 72,769,384 (-)NCBI
ChlSab1.1 Ensembl472,737,678 - 72,835,153 (-)Ensembl
Vero_WHO_p1.0NW_02366604921,585,518 - 21,745,975 (-)NCBI
Lhfpl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248692,991,062 - 3,146,048 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1
Low 10 4 3 5 2 23 2 2 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001243213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK347793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK348362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01049799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000063226   ⟹   ENSSSCP00000032311
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl287,322,934 - 87,498,724 (-)Ensembl
RefSeq Acc Id: NM_001243213   ⟹   NP_001230142
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,323,185 - 87,498,377 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079469   ⟹   XP_020935128
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,498,311 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079473   ⟹   XP_020935132
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,494,560 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079476   ⟹   XP_020935135
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,494,560 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079478   ⟹   XP_020935137
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,490,854 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079479   ⟹   XP_020935138
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,490,854 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079483   ⟹   XP_020935142
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,428,601 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079487   ⟹   XP_020935146
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,498,390 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079488   ⟹   XP_020935147
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,360,368 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079489   ⟹   XP_020935148
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,490,854 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079492   ⟹   XP_020935151
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,350,025 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079494   ⟹   XP_020935153
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,351,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079500   ⟹   XP_020935159
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,494,562 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079502   ⟹   XP_020935161
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,498,568 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079510   ⟹   XP_020935169
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,498,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079511   ⟹   XP_020935170
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,498,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079514   ⟹   XP_020935173
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,498,377 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079518   ⟹   XP_020935177
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,428,602 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079527   ⟹   XP_020935186
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,498,647 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079530   ⟹   XP_020935189
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1287,321,119 - 87,360,371 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020935169   ⟸   XM_021079510
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935170   ⟸   XM_021079511
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935186   ⟸   XM_021079527
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935161   ⟸   XM_021079502
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935146   ⟸   XM_021079487
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935173   ⟸   XM_021079514
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935128   ⟸   XM_021079469
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935159   ⟸   XM_021079500
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935135   ⟸   XM_021079476
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935132   ⟸   XM_021079473
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935138   ⟸   XM_021079479
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935148   ⟸   XM_021079489
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935137   ⟸   XM_021079478
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935177   ⟸   XM_021079518
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935142   ⟸   XM_021079483
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935189   ⟸   XM_021079530
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935147   ⟸   XM_021079488
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935153   ⟸   XM_021079494
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935151   ⟸   XM_021079492
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001230142   ⟸   NM_001243213
- Sequence:
RefSeq Acc Id: ENSSSCP00000032311   ⟸   ENSSSCT00000063226


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028536 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070005493 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000032311 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070008552 UniProtKB/TrEMBL
  ENSSSCP00070008570 UniProtKB/TrEMBL
  ENSSSCP00070008579 UniProtKB/TrEMBL
  ENSSSCP00070008593 UniProtKB/TrEMBL
  ENSSSCP00070008601 UniProtKB/TrEMBL
  ENSSSCP00070008609 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000063226 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070010417 UniProtKB/TrEMBL
  ENSSSCT00070010439 UniProtKB/TrEMBL
  ENSSSCT00070010448 UniProtKB/TrEMBL
  ENSSSCT00070010464 UniProtKB/TrEMBL
  ENSSSCT00070010474 UniProtKB/TrEMBL
  ENSSSCT00070010483 UniProtKB/TrEMBL
InterPro LHFPL UniProtKB/TrEMBL
NCBI Gene LHFPL2 ENTREZGENE
PANTHER PTHR12489 UniProtKB/TrEMBL
Pfam L_HMGIC_fpl UniProtKB/TrEMBL
UniProt A0A4X1T070_PIG UniProtKB/TrEMBL
  F1S2F5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89705 ENTREZGENE