LHFPL2 (LHFPL tetraspan subfamily member 2) - Rat Genome Database

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Gene: LHFPL2 (LHFPL tetraspan subfamily member 2) Canis lupus familiaris
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Symbol: LHFPL2
Name: LHFPL tetraspan subfamily member 2
RGD ID: 12344676
Description: INVOLVED IN development of primary female sexual characteristics (inferred); development of primary male sexual characteristics (inferred); positive regulation of fertilization (inferred); ASSOCIATED WITH COVID-19 (ortholog); Hermansky-Pudlak syndrome 2 (ortholog); IgA glomerulonephritis (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lipoma HMGIC fusion partner-like 2; LOC102153235; uncharacterized LOC102153235
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1328,255,389 - 28,279,510 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha329,367,033 - 29,520,677 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0328,049,631 - 28,203,008 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1327,985,849 - 28,139,437 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,964,071 - 28,117,601 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0328,291,124 - 28,444,925 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LHFPL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1328,255,389 - 28,279,510 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha329,367,033 - 29,520,677 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0328,049,631 - 28,203,008 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1327,985,849 - 28,139,437 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,964,071 - 28,117,601 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0328,291,124 - 28,444,925 (+)NCBIUU_Cfam_GSD_1.0
LHFPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38578,485,230 - 78,648,772 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl578,485,215 - 78,770,021 (-)EnsemblGRCh38hg38GRCh38
GRCh37577,781,053 - 77,944,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36577,816,794 - 77,980,404 (-)NCBINCBI36Build 36hg18NCBI36
Build 34577,816,809 - 77,841,867NCBI
Celera573,674,222 - 73,837,829 (-)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef572,987,888 - 73,135,012 (-)NCBIHuRef
CHM1_1577,214,339 - 77,377,632 (-)NCBICHM1_1
T2T-CHM13v2.0578,966,706 - 79,251,841 (-)NCBIT2T-CHM13v2.0
Lhfpl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391394,193,659 - 94,331,918 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1394,194,304 - 94,331,917 (+)EnsemblGRCm39 Ensembl
GRCm381394,057,152 - 94,195,410 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1394,057,796 - 94,195,409 (+)EnsemblGRCm38mm10GRCm38
MGSCv371394,827,751 - 94,965,364 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361395,158,549 - 95,296,163 (+)NCBIMGSCv36mm8
Celera1397,679,541 - 97,817,771 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1349.03NCBI
Lhfpl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8227,016,404 - 27,169,830 (+)NCBIGRCr8
mRatBN7.2225,281,771 - 25,428,128 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl225,281,901 - 25,427,950 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx232,373,260 - 32,456,118 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0230,473,524 - 30,556,383 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0225,298,201 - 25,380,341 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0223,705,491 - 23,852,021 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl223,770,721 - 23,852,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0242,878,147 - 43,023,911 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4224,407,387 - 24,489,407 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1224,384,047 - 24,406,455 (+)NCBI
Celera221,418,069 - 21,501,439 (+)NCBICelera
Cytogenetic Map2q12NCBI
Lhfpl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542522,504,107 - 22,557,970 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542522,398,503 - 22,556,667 (+)NCBIChiLan1.0ChiLan1.0
LHFPL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2436,655,122 - 36,819,286 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1534,809,565 - 34,972,913 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0536,663,171 - 36,825,272 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1537,151,995 - 37,314,043 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl537,289,046 - 37,314,043 (+)Ensemblpanpan1.1panPan2
Lhfpl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213184,321,166 - 184,460,783 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365496,397,810 - 6,418,937 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365496,398,190 - 6,537,832 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LHFPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl287,322,934 - 87,349,878 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1287,321,119 - 87,498,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2288,879,254 - 88,970,752 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LHFPL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1472,738,214 - 72,769,384 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl472,737,678 - 72,835,153 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604921,585,518 - 21,745,975 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lhfpl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248692,991,062 - 3,071,841 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248692,991,062 - 3,146,048 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LHFPL2
329 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038471553   ⟹   XP_038327481
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1327,985,849 - 28,139,437 (+)NCBI
RefSeq Acc Id: XM_038471762   ⟹   XP_038327690
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha329,367,033 - 29,520,677 (+)NCBI
RefSeq Acc Id: XM_038532483   ⟹   XP_038388411
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0328,291,124 - 28,444,925 (+)NCBI
RefSeq Acc Id: XM_038596769   ⟹   XP_038452697
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0327,964,071 - 28,117,601 (+)NCBI
RefSeq Acc Id: XM_038660977   ⟹   XP_038516905
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0328,049,631 - 28,203,008 (+)NCBI
RefSeq Acc Id: XP_038327481   ⟸   XM_038471553
RefSeq Acc Id: XP_038452697   ⟸   XM_038596769
RefSeq Acc Id: XP_038516905   ⟸   XM_038660977
- UniProtKB: A0A8I3N2E8 (UniProtKB/TrEMBL),   A0A8C0NQN8 (UniProtKB/TrEMBL),   A0A8C0R8C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038327690   ⟸   XM_038471762
- UniProtKB: A0A8P0PG59 (UniProtKB/TrEMBL),   A0A8C0NQN8 (UniProtKB/TrEMBL),   A0A8C0R8C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388411   ⟸   XM_038532483
- UniProtKB: A0A8C0NQN8 (UniProtKB/TrEMBL),   A0A8C0R8C2 (UniProtKB/TrEMBL),   A0A8P0PG59 (UniProtKB/TrEMBL)

Promoters
RGD ID:13682705
Promoter ID:EPDNEW_C771
Type:single initiation site
Name:LHFPL2_1
Description:LHFPL tetraspan subfamily member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1328,255,451 - 28,255,511EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000054566 UniProtKB/TrEMBL
  ENSCAFG00030014925 UniProtKB/TrEMBL
  ENSCAFG00040000167 UniProtKB/TrEMBL
  ENSCAFG00845008040 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000108034.1 UniProtKB/TrEMBL
  ENSCAFT00030027562.1 UniProtKB/TrEMBL
  ENSCAFT00040000250.1 UniProtKB/TrEMBL
  ENSCAFT00845014168 ENTREZGENE
  ENSCAFT00845014168.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro LHFPL UniProtKB/TrEMBL
NCBI Gene LHFPL2 ENTREZGENE
PANTHER LHFPL TETRASPAN SUBFAMILY MEMBER 2 PROTEIN UniProtKB/TrEMBL
  PTHR12489 UniProtKB/TrEMBL
Pfam L_HMGIC_fpl UniProtKB/TrEMBL
UniProt A0A8C0NQN8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R8C2 ENTREZGENE
  A0A8I3N2E8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PG59 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42658 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 LHFPL2  LHFPL tetraspan subfamily member 2  LOC102153235  uncharacterized LOC102153235  Data merged from RGD:12318862 737654 PROVISIONAL
2017-06-27 LHFPL2  LHFPL tetraspan subfamily member 2    lipoma HMGIC fusion partner-like 2  Symbol and/or name change 5135510 APPROVED