S100z (S100 calcium binding protein Z) - Rat Genome Database

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Gene: S100z (S100 calcium binding protein Z) Rattus norvegicus
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Symbol: S100z
Name: S100 calcium binding protein Z
RGD ID: 1562902
Description: Predicted to enable calcium ion binding activity; calcium-dependent protein binding activity; and protein homodimerization activity. Orthologous to human S100Z (S100 calcium binding protein Z); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,5-hexanedione; 3,7-dihydropurine-6-thione.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC294661; protein S100-Z; RGD1562902; S100 calcium binding protein, zeta; similar to S100 calcium binding protein, zeta
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,472,527 - 28,476,750 (-)NCBIGRCr8
mRatBN7.2226,737,796 - 26,753,611 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,738,776 - 26,752,390 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx233,776,927 - 33,778,551 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0231,877,145 - 31,878,769 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0226,692,975 - 26,694,599 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0225,188,381 - 25,203,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl225,188,782 - 25,190,495 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0244,344,729 - 44,348,915 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4225,852,473 - 25,854,097 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera222,803,619 - 22,805,242 (-)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11747429  


Genomics

Comparative Map Data
S100z
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,472,527 - 28,476,750 (-)NCBIGRCr8
mRatBN7.2226,737,796 - 26,753,611 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,738,776 - 26,752,390 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx233,776,927 - 33,778,551 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0231,877,145 - 31,878,769 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0226,692,975 - 26,694,599 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0225,188,381 - 25,203,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl225,188,782 - 25,190,495 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0244,344,729 - 44,348,915 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4225,852,473 - 25,854,097 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera222,803,619 - 22,805,242 (-)NCBICelera
Cytogenetic Map2q12NCBI
S100Z
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38576,850,014 - 76,952,953 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl576,850,001 - 76,921,650 (+)EnsemblGRCh38hg38GRCh38
GRCh37576,145,839 - 76,217,475 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36576,181,582 - 76,252,812 (+)NCBINCBI36Build 36hg18NCBI36
Build 34576,181,581 - 76,209,800NCBI
Celera572,040,311 - 72,111,532 (+)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef571,353,650 - 71,423,705 (+)NCBIHuRef
CHM1_1575,578,986 - 75,650,179 (+)NCBICHM1_1
T2T-CHM13v2.0577,331,819 - 77,434,785 (+)NCBIT2T-CHM13v2.0
S100z
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391395,613,809 - 95,615,163 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1395,613,776 - 95,615,229 (-)EnsemblGRCm39 Ensembl
GRCm381395,477,301 - 95,478,655 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1395,477,268 - 95,478,721 (-)EnsemblGRCm38mm10GRCm38
MGSCv371396,247,256 - 96,248,610 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361396,578,000 - 96,579,354 (-)NCBIMGSCv36mm8
Celera1399,097,071 - 99,098,425 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1349.53NCBI
S100z
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542524,014,039 - 24,022,870 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542524,014,039 - 24,022,842 (-)NCBIChiLan1.0ChiLan1.0
S100Z
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2438,423,182 - 38,431,606 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1536,576,809 - 36,585,233 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0538,383,062 - 38,427,515 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1538,965,912 - 38,968,358 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl538,965,891 - 38,968,358 (-)Ensemblpanpan1.1panPan2
S100Z
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1329,773,107 - 29,784,376 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha331,012,343 - 31,023,607 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0329,692,313 - 29,703,569 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1329,629,032 - 29,640,293 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0329,609,848 - 29,621,178 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,979,092 - 29,990,346 (-)NCBIUU_Cfam_GSD_1.0
S100z
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213190,745,073 - 190,747,842 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936549111,395 - 113,662 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936549111,395 - 113,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100Z
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl285,767,614 - 85,770,957 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1285,757,636 - 85,771,742 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2287,348,154 - 87,386,912 (+)NCBISscrofa10.2Sscrofa10.2susScr3
S100z
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248691,365,911 - 1,369,465 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248691,365,615 - 1,369,457 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in S100z
117 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:68
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000024202
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4
Low 3 4 2 2 2 2 5 17 11 3
Below cutoff 8 19 16 8 16 1 3 16 10 14 4 1

Sequence


RefSeq Acc Id: ENSRNOT00000024202   ⟹   ENSRNOP00000024202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl226,738,776 - 26,752,390 (-)Ensembl
Rnor_6.0 Ensembl225,188,782 - 25,190,495 (-)Ensembl
RefSeq Acc Id: NM_001191701   ⟹   NP_001178630
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8228,472,527 - 28,476,750 (-)NCBI
mRatBN7.2226,737,796 - 26,742,019 (-)NCBI
Rnor_6.0225,188,782 - 25,190,495 (-)NCBI
Rnor_5.0244,344,729 - 44,348,915 (-)NCBI
Celera222,803,619 - 22,805,242 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001178630 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024202.4
RefSeq Acc Id: NP_001178630   ⟸   NM_001191701
- UniProtKB: D3ZEJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000024202   ⟸   ENSRNOT00000024202
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZEJ4-F1-model_v2 AlphaFold D3ZEJ4 1-99 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562902 AgrOrtholog
BioCyc Gene G2FUF-54806 BioCyc
Ensembl Genes ENSRNOG00000017998 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024202.5 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-like_dom UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_Ca-bd UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
KEGG Report rno:294661 UniProtKB/TrEMBL
NCBI Gene 294661 ENTREZGENE
PANTHER PTHR11639:SF72 UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam S_100 UniProtKB/TrEMBL
PhenoGen S100z PhenoGen
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017998 RatGTEx
SMART EFh UniProtKB/TrEMBL
  S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt D3ZEJ4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-18 S100z  S100 calcium binding protein Z  S100z  S100 calcium binding protein, zeta   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 S100z  S100 calcium binding protein, zeta   S100z_predicted  S100 calcium binding protein, zeta (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 S100z_predicted  S100 calcium binding protein, zeta (predicted)  RGD1562902_predicted  similar to S100 calcium binding protein, zeta (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1562902_predicted  similar to S100 calcium binding protein, zeta (predicted)  LOC294661  similar to S100 calcium binding protein, zeta  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC294661  similar to S100 calcium binding protein, zeta      Symbol and Name status set to provisional 70820 PROVISIONAL