Gene: Clrn1 (clarin 1) Rattus norvegicus
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Symbol: Clrn1
Name: clarin 1
Description: INVOLVED IN actin filament organization (ortholog); auditory receptor cell development (ortholog); auditory receptor cell stereocilium organization (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; ASSOCIATED WITH retinitis pigmentosa; fundus dystrophy (ortholog); retinitis pigmentosa 61 (ortholog); FOUND IN basal part of cell (ortholog); lamellipodium (ortholog); microtubule (ortholog); INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; bisphenol A
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: clarin-1; Ush3; Ush3a; Usher syndrome 3A homolog; Usher syndrome 3A homolog (human); Usher syndrome type III A; usher syndrome type-3 protein homolog
Orthologs:
Homo sapiens (human) : CLRN1 (clarin 1)  HGNC  Alliance
Mus musculus (house mouse) : Clrn1 (clarin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clrn1 (clarin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CLRN1 (clarin 1)
Canis lupus familiaris (dog) : CLRN1 (clarin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clrn1 (clarin 1)
Sus scrofa (pig) : CLRN1 (clarin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02149,049,925 - 149,088,787 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02168,473,047 - 168,511,371 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42148,193,633 - 148,243,575 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12148,143,595 - 148,163,994 (-)NCBI
Celera2137,511,773 - 137,558,813 (-)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Clrn1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 628779
Created: 2003-02-27
Species: Rattus norvegicus
Last Modified: 2019-01-30
Status: ACTIVE