Rpl31l11 (ribosomal protein L31 like 11) - Rat Genome Database

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Gene: Rpl31l11 (ribosomal protein L31 like 11) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl31l11
Name: ribosomal protein L31 like 11
RGD ID: 9101027
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be part of cytosolic large ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L31 pseudogene; 60S ribosomal protein L31-like; large ribosomal subunit protein eL31-like; LOC103691563; LOC310388; RGD1561841; similar to ribosomal protein L31
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82134,333,690 - 134,334,163 (-)NCBIGRCr8
mRatBN7.22132,272,163 - 132,272,636 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2132,272,250 - 132,272,627 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02138,489,364 - 138,489,758 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02157,975,075 - 157,975,452 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42136,867,215 - 136,867,613 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2127,582,544 - 127,582,938 (+)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl31l11Ratcytoplasmic translation involved_inIBAPANTHER:PTN000102776 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rpl31l11Rattranslation involved_inIEAInterPro:IPR000054 and InterPro:IPR0200521600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl31l11Ratcytosolic large ribosomal subunit part_ofIBAMGI:2149632 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rpl31l11Ratribonucleoprotein complex part_ofIEAUniProtKB-KW:KW-06871600115GO_REF:0000043UniProtGO_REF:0000043
Rpl31l11Ratribosome located_inIEAInterPro:IPR000054 and InterPro:IPR0200521600115GO_REF:0000002InterProGO_REF:0000002
Rpl31l11Ratribosome located_inIEAUniProtKB-KW:KW-06891600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl31l11Ratstructural constituent of ribosome enablesIEAInterPro:IPR000054 and InterPro:IPR0200521600115GO_REF:0000002InterProGO_REF:0000002
Rpl31l11Ratstructural constituent of ribosome enablesIBAFB:FBgn0285949 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Rpl31l11
3 total Variants

1 to 10 of 60 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat

1 to 10 of 60 rows





RefSeq Transcripts XM_039103307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000042248   ⟹   ENSRNOP00000040073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2132,272,250 - 132,272,627 (-)Ensembl
Rnor_6.0 Ensembl2138,489,364 - 138,489,741 (+)Ensembl
RefSeq Acc Id: XM_039103307   ⟹   XP_038959235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82134,333,690 - 134,334,163 (-)NCBI
mRatBN7.22132,272,163 - 132,272,636 (-)NCBI
Protein RefSeqs XP_038959235 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040073.1
RefSeq Acc Id: XP_038959235   ⟸   XM_039103307
- UniProtKB: D3ZAC7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000040073   ⟸   ENSRNOT00000042248

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAC7-F1-model_v2 AlphaFold D3ZAC7 1-125 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 17 of 17 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-53158 BioCyc
Ensembl Genes ENSRNOG00000029493 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042248.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.440.10 UniProtKB/TrEMBL
InterPro Ribosomal_L31e UniProtKB/TrEMBL
  Ribosomal_L31e_CS UniProtKB/TrEMBL
  Ribosomal_L31e_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC103691563 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  PTHR10956 UniProtKB/TrEMBL
Pfam Ribosomal_L31e UniProtKB/TrEMBL
PhenoGen Rpl31l11 PhenoGen
PROSITE RIBOSOMAL_L31E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029493 RatGTEx
SMART Ribosomal_L31e UniProtKB/TrEMBL
Superfamily-SCOP SSF54575 UniProtKB/TrEMBL
UniProt D3ZAC7 ENTREZGENE, UniProtKB/TrEMBL
1 to 17 of 17 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl31l11  ribosomal protein L31 like 11  LOC103691563  60S ribosomal protein L31 pseudogene  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC103691563  60S ribosomal protein L31 pseudogene  RGD1561841  similar to ribosomal protein L31  Data merged from RGD:1561841 737654 PROVISIONAL
2014-08-25 LOC103691563  60S ribosomal protein L31 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1561841  similar to ribosomal protein L31   RGD1561841_predicted  similar to ribosomal protein L31 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561841_predicted  similar to ribosomal protein L31 (predicted)  LOC310388  similar to ribosomal protein L31  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC310388  similar to ribosomal protein L31      Symbol and Name status set to provisional 70820 PROVISIONAL