LOC103690087 (uncharacterized LOC103690087) - Rat Genome Database

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Gene: LOC103690087 (uncharacterized LOC103690087) Rattus norvegicus
Analyze
Symbol: LOC103690087
Name: uncharacterized LOC103690087
RGD ID: 9444651
Description:
Type: ncrna
RefSeq Status: VALIDATED
Previously known as: LOC102547259; uncharacterized LOC102547259
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82104,897,698 - 105,029,931 (-)NCBIGRCr8
mRatBN7.22102,968,007 - 103,010,870 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.02105,272,747 - 105,309,620 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02125,008,134 - 125,039,360 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02125,195,253 - 125,218,532 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera298,334,924 - 98,371,543 (-)NCBICelera
Cytogenetic Map2q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC103690087
331 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)238573329122609194Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)267942638112942638Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)264366971109366971Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)228484589169504100Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)228484589169504100Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_190575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_590995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_590999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_591002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005500806
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
mRatBN7.22102,968,010 - 103,005,681 (-)NCBI
RefSeq Acc Id: XR_005500807
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
mRatBN7.22102,968,030 - 103,010,870 (-)NCBI
RefSeq Acc Id: XR_005500808
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
mRatBN7.22102,968,025 - 103,005,681 (-)NCBI
RefSeq Acc Id: XR_005500809
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
mRatBN7.22102,968,026 - 103,005,681 (-)NCBI
RefSeq Acc Id: XR_005500811
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
mRatBN7.22102,968,030 - 103,005,681 (-)NCBI
RefSeq Acc Id: XR_005500812
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
mRatBN7.22102,968,027 - 103,005,681 (-)NCBI
RefSeq Acc Id: XR_005500813
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
mRatBN7.22102,968,007 - 103,005,681 (-)NCBI
RefSeq Acc Id: XR_005500814
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
mRatBN7.22102,968,031 - 103,005,681 (-)NCBI
RefSeq Acc Id: XR_005500816
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
mRatBN7.22102,968,032 - 103,005,681 (-)NCBI
RefSeq Acc Id: XR_005500819
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,898,930 - 105,029,921 (-)NCBI
mRatBN7.22102,969,895 - 103,005,681 (-)NCBI
RefSeq Acc Id: XR_005500820
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,898,930 - 105,029,921 (-)NCBI
mRatBN7.22102,969,895 - 103,005,681 (-)NCBI
RefSeq Acc Id: XR_005500821
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
mRatBN7.22102,968,020 - 103,005,681 (-)NCBI
RefSeq Acc Id: XR_010063777
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
RefSeq Acc Id: XR_010063778
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,931 (-)NCBI
RefSeq Acc Id: XR_010063779
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
RefSeq Acc Id: XR_010063780
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,782 (-)NCBI
RefSeq Acc Id: XR_010063781
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
RefSeq Acc Id: XR_010063782
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,782 (-)NCBI
RefSeq Acc Id: XR_010063783
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
RefSeq Acc Id: XR_010063784
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
RefSeq Acc Id: XR_010063785
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,921 (-)NCBI
RefSeq Acc Id: XR_590995
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,897,698 - 105,029,925 (-)NCBI
mRatBN7.22102,968,031 - 103,005,681 (-)NCBI
Rnor_6.02105,272,747 - 105,309,615 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-53582 BioCyc
NCBI Gene LOC103690087 ENTREZGENE
PhenoGen LOC103690087 PhenoGen
RNAcentral URS0000CCE30C RNACentral
  URS0000CCE8FA RNACentral
  URS0000CCEA66 RNACentral
  URS0000CCEC89 RNACentral
  URS0000CCECF3 RNACentral
  URS0000CCED86 RNACentral
  URS0000CCF3EE RNACentral
  URS0000CCF6B0 RNACentral
  URS0000CCF8C1 RNACentral
  URS0000CCF962 RNACentral
  URS0000CD0471 RNACentral
  URS0000CD0537 RNACentral
  URS0000CD05BC RNACentral
  URS0000CD0791 RNACentral
  URS0000CD0864 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC103690087  uncharacterized LOC103690087  LOC102547259  uncharacterized LOC102547259  Data merged from RGD:7595846 737654 PROVISIONAL
2014-08-25 LOC103690087  uncharacterized LOC103690087      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-18 LOC102547259  uncharacterized LOC102547259      Symbol and Name status set to provisional 70820 PROVISIONAL